Rroxscaffold_1G00058340

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000491
Physical Location & Seq
Reverse (-)
80178453 .. 80181665
3213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058340.1

Sequence Viewer

Length: 1116 bp
ATGAGCACCCAAATTATGCGTCGCTACGATTGTTGTGGAGAAGAAGTTCTGCGTTGGGCAATATTGAACTATAAGAAAGAGCAAGAGCATCGCGATCCTCTTCCTATTTCAACAGTAGATGTCAAATGTCAAACGAGAACAGAAACTTTTTGGTTCACTGCTGATGAGTTGATCGAAATTCTCAAGAAGTTAAACAATTCAGACCAGTTGGAGGCGTTGGCCCACGATAGCAGCACCGAACAACGGATCGAGGAGTGGTTGTTGAGAAATGGGTTCCCTGAGGATCTGGAGGAAAACATCTTGAATTTCCTAAAGGAAAACAACGGGCTAGTGGAAGGAAACAGGGATGCTGATGTGGATTTTCTATTTGGTATTCTTCCAGAAAATATCAAACCATCCATAAAGCGCCATCTCGGCATGAAAGCCCTAAAGAAAATACCCATGCTTCAAAAAATGCATGAATACGTGTTGGAAATCATCTGCAACCATCTCGAGCCAGTGGTGTACAAGATGAATAGCGATGTTGTTAGAGCGGGAGAACCACTTGGTTTGATGATTTTCGTTCTAGGAGGCAAAATTATAATGACTGACACGACTAGCAGCAATGCCACAACAAGTTCCTCAGAGATCACCGACCCATCTGCTGAGAATGTTCTTGAGAGAGGCGGTTATTATGGAGAACAACTTCTGAGCTGGGCATCACCCAACAACACTACTTCATCTGACAGTCCCGTCATCTCAACTAGAGATGTCAAATGTCAAACAAAAGTGGAAGCCTTGATACTCAAGGCCGAGGACTTGAAAAGTATAGCCTCCAAATGCGGATCGCAGTGGAATTTCAACAATTGTATGAACTCTCAGCAATTGGTTGATGATGGTAGAGATCGTGTGGCTAATACAGCACTTACGTCCACTATTGAGGAGACTATCCAGCTTCATCAGGGTCATGACATGCTTCTCGAGCAGCTGGTTCTAATTCGAGAAACCATGTTCCCGTTTCGCAATGATGATCAAGGACAGAGACTAGATAATCAGGGACGGAGGTTAGATGAGATGGCCGCATTCTTAACCAGATTGGGATATACGGGCACATCTCCTCCTGCTGCAGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

371

Amino Acids

41.97

Weight (kDa)

4.94

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
AasI GACNNNNNNGTC 1 cut(s) 731
AccBSI CCGCTC 1 cut(s) 533
AccII CGCG 1 cut(s) 93
AciI CCGC 4 cut(s) 533, 666, 822, 1059
AclWI GGATC 4 cut(s) 89, 254, 291, 832
AcoI YGGCCR 1 cut(s) 1056
AcsI RAATTY 3 cut(s) 177, 304, 835
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 2 cut(s) 211, 243
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 6 cut(s) 67, 111, 304, 449, 802, 841
AloI GAACNNNNNNTCC 2 cut(s) 30, 62
AluBI AGCT 3 cut(s) 693, 934, 967
AluI AGCT 3 cut(s) 693, 934, 967
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 917, 1015
AlwI GGATC 4 cut(s) 89, 254, 291, 832
Ama87I CYCGRG 2 cut(s) 491, 959
AoxI GGCC 3 cut(s) 219, 789, 1056
ApeKI GCWGC 5 cut(s) 231, 600, 964, 1103, 1106
ApoI RAATTY 3 cut(s) 177, 304, 835
ArsI GACNNNNNNTTYG 1 cut(s) 36
Asp700I GAANNNNTTC 2 cut(s) 45, 684
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 622, 693
AvaI CYCGRG 2 cut(s) 491, 959
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 1091
BarI GAAGNNNNNNTAC 2 cut(s) 765, 797
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 4 cut(s) 243, 612, 976, 1090
BccI CCATC 6 cut(s) 403, 417, 495, 646, 869, 1048
BcgI CGANNNNNNTGC 6 cut(s) 71, 105, 472, 506, 623, 657
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 2 cut(s) 917, 1015
BfaI CTAG 5 cut(s) 329, 566, 597, 744, 1025
BfmI CTRYAG 1 cut(s) 1104
BfoI RGCGCY 1 cut(s) 409
BglI GCCNNNNNGGC 1 cut(s) 414
BisI GCNGC 6 cut(s) 232, 601, 965, 1059, 1104, 1107
BlsI GCNGC 6 cut(s) 233, 602, 966, 1060, 1105, 1108
BmeT110I CYCGRG 2 cut(s) 491, 959
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 275
BmsI GCATC 3 cut(s) 97, 337, 707
BpmI CTGGAG 1 cut(s) 308
BpuEI CTTGAG 3 cut(s) 167, 677, 770
BsaAI YACGTR 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 792
BsaXI ACNNNNNCTCC 6 cut(s) 30, 60, 245, 275, 1081, 1111
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 243
Bse1I ACTGG 2 cut(s) 205, 497
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 2 cut(s) 610, 1009
BseDI CCNNGG 1 cut(s) 792
BseGI GGATG 2 cut(s) 352, 395
BseLI CCNNNNNNNGG 2 cut(s) 211, 243
BseMI GCAATG 2 cut(s) 610, 1009
BseMII CTCAG 5 cut(s) 270, 636, 636, 680, 872
BseNI ACTGG 2 cut(s) 205, 497
BseRI GAGGAG 3 cut(s) 266, 935, 1086
BseSI GKGCMC 1 cut(s) 1091
BseXI GCAGC 4 cut(s) 243, 612, 976, 1090
BseYI CCCAGC 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 3 cut(s) 221, 791, 1058
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 2 cut(s) 491, 959
BslFI GGGAC 2 cut(s) 714, 1050
BslI CCNNNNNNNGG 2 cut(s) 211, 243
BsmAI GTCTC 2 cut(s) 917, 1015
BsmFI GGGAC 2 cut(s) 714, 1050
BsmI GAATGC 1 cut(s) 1061
BsnI GGCC 3 cut(s) 221, 791, 1058
BsoBI CYCGRG 2 cut(s) 491, 959
Bsp1286I GDGCHC 2 cut(s) 8, 1091
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 8 cut(s) 94, 171, 246, 283, 627, 824, 883, 1009
Bsp68I TCGCGA 1 cut(s) 93
BspACI CCGC 4 cut(s) 533, 666, 822, 1059
BspANI GGCC 3 cut(s) 221, 791, 1058
BspCNI CTCAG 5 cut(s) 271, 635, 637, 681, 871
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 946
BspLI GGNNCC 1 cut(s) 275
BspMAI CTGCAG 1 cut(s) 1108
BspPI GGATC 4 cut(s) 89, 254, 291, 832
BsrBI CCGCTC 1 cut(s) 533
BsrDI GCAATG 2 cut(s) 610, 1009
BsrGI TGTACA 1 cut(s) 504
BsrI ACTGG 2 cut(s) 205, 497
BssECI CCNNGG 1 cut(s) 792
BssMI GATC 8 cut(s) 94, 171, 246, 283, 627, 824, 883, 1009
Bst4CI ACNGT 2 cut(s) 115, 728
Bst6I CTCTTC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 466
BstDEI CTNAG 5 cut(s) 279, 622, 645, 689, 858
BstF5I GGATG 2 cut(s) 352, 395
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 8 cut(s) 97, 174, 249, 286, 630, 827, 886, 1012
BstMAI GTCTC 2 cut(s) 917, 1015
BstMBI GATC 8 cut(s) 94, 171, 246, 283, 627, 824, 883, 1009
BstMWI GCNNNNNNNGC 3 cut(s) 414, 899, 961
BstNSI RCATGY 1 cut(s) 955
BstSFI CTRYAG 1 cut(s) 1104
BstSLI GKGCMC 1 cut(s) 1091
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 4 cut(s) 243, 612, 976, 1090
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 3 cut(s) 221, 791, 1058
BtgZI GCGATG 2 cut(s) 74, 534
BtsCI GGATG 2 cut(s) 352, 395
BtsI GCAGTG 2 cut(s) 156, 836
BtsIMutI CAGTG 3 cut(s) 156, 504, 836
BtuMI TCGCGA 1 cut(s) 93
CciI TCATGA 1 cut(s) 946
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 505
CspCI CAANNNNNGTGG 2 cut(s) 531, 566
CviAII CATG 6 cut(s) 418, 442, 458, 947, 952, 988
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 5 cut(s) 279, 622, 645, 689, 858
DpnI GATC 8 cut(s) 96, 173, 248, 285, 629, 826, 885, 1011
DpnII GATC 8 cut(s) 94, 171, 246, 283, 627, 824, 883, 1009
DrdI GACNNNNNNGTC 1 cut(s) 731
DseDI GACNNNNNNGTC 1 cut(s) 731
EaeI YGGCCR 1 cut(s) 1056
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 279
Eco88I CYCGRG 2 cut(s) 491, 959
EcoT22I ATGCAT 1 cut(s) 459
FaeI CATG 6 cut(s) 421, 445, 461, 950, 955, 991
FaqI GGGAC 2 cut(s) 714, 1050
FatI CATG 6 cut(s) 417, 441, 457, 946, 951, 987
FauI CCCGC 1 cut(s) 526
FbaI TGATCA 1 cut(s) 1009
Fnu4HI GCNGC 6 cut(s) 232, 601, 965, 1059, 1104, 1107
FokI GGATG 2 cut(s) 359, 382
Fsp4HI GCNGC 6 cut(s) 232, 601, 965, 1059, 1104, 1107
FspBI CTAG 5 cut(s) 329, 566, 597, 744, 1025
GlaI GCGC 1 cut(s) 407
GluI GCNGC 6 cut(s) 232, 601, 965, 1059, 1104, 1107
GsaI CCCAGC 1 cut(s) 697
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 409
HaeIII GGCC 3 cut(s) 221, 791, 1058
HgaI GACGC 1 cut(s) 8
HhaI GCGC 1 cut(s) 408
Hin1II CATG 6 cut(s) 421, 445, 461, 950, 955, 991
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HphI GGTGA 2 cut(s) 622, 693
Hpy166II GTNNAC 3 cut(s) 156, 505, 912
Hpy188I TCNGA 4 cut(s) 202, 625, 690, 724
Hpy8I GTNNAC 3 cut(s) 156, 505, 912
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 2 cut(s) 115, 728
HpyCH4IV ACGT 2 cut(s) 465, 908
HpyCH4V TGCA 3 cut(s) 457, 483, 1106
HpyF10VI GCNNNNNNNGC 3 cut(s) 414, 899, 961
HpyF3I CTNAG 5 cut(s) 279, 622, 645, 689, 858
HpySE526I ACGT 2 cut(s) 465, 908
Hsp92II CATG 6 cut(s) 421, 445, 461, 950, 955, 991
HspAI GCGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 8 cut(s) 94, 171, 246, 283, 627, 824, 883, 1009
Lsp1109I GCAGC 4 cut(s) 243, 612, 976, 1090
LweI GCATC 3 cut(s) 97, 337, 707
MaeI CTAG 5 cut(s) 329, 566, 597, 744, 1025
MaeII ACGT 2 cut(s) 465, 908
MalI GATC 8 cut(s) 96, 173, 248, 285, 629, 826, 885, 1011
MbiI CCGCTC 1 cut(s) 533
MboI GATC 8 cut(s) 94, 171, 246, 283, 627, 824, 883, 1009
MboII GAAGA 3 cut(s) 53, 92, 368
MfeI CAATTG 2 cut(s) 844, 863
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 8, 1091
MluCI AATT 9 cut(s) 12, 177, 196, 304, 576, 835, 844, 863, 975
MmeI TCCRAC 2 cut(s) 189, 450
Mph1103I ATGCAT 1 cut(s) 459
MroXI GAANNNNTTC 2 cut(s) 45, 684
MseI TTAA 2 cut(s) 191, 1067
MspA1I CMGCKG 1 cut(s) 967
MunI CAATTG 2 cut(s) 844, 863
Mva1269I GAATGC 1 cut(s) 1061
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 414, 899, 961
NdeII GATC 8 cut(s) 94, 171, 246, 283, 627, 824, 883, 1009
NlaIII CATG 6 cut(s) 421, 445, 461, 950, 955, 991
NlaIV GGNNCC 1 cut(s) 275
NmeAIII GCCGAG 2 cut(s) 393, 817
NruI TCGCGA 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 459
NspI RCATGY 1 cut(s) 955
PaeR7I CTCGAG 2 cut(s) 491, 959
PagI TCATGA 1 cut(s) 946
PctI GAATGC 1 cut(s) 1061
PdmI GAANNNNTTC 2 cut(s) 45, 684
PkrI GCNGC 6 cut(s) 233, 602, 966, 1060, 1105, 1108
Ppu21I YACGTR 1 cut(s) 466
PsiI TTATAA 1 cut(s) 581
PspFI CCCAGC 1 cut(s) 693
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 220
PstI CTGCAG 1 cut(s) 1108
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 967
RruI TCGCGA 1 cut(s) 93
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
SaqAI TTAA 2 cut(s) 191, 1067
SatI GCNGC 6 cut(s) 232, 601, 965, 1059, 1104, 1107
Sau3AI GATC 8 cut(s) 94, 171, 246, 283, 627, 824, 883, 1009
Sau96I GGNCC 1 cut(s) 220
SduI GDGCHC 2 cut(s) 8, 1091
SetI ASST 7 cut(s) 468, 695, 911, 936, 969, 1046, 1114
SfaNI GCATC 3 cut(s) 97, 337, 707
SfcI CTRYAG 1 cut(s) 1104
Sfr274I CTCGAG 2 cut(s) 491, 959
SlaI CTCGAG 2 cut(s) 491, 959
SmlI CTYRAG 5 cut(s) 182, 491, 656, 785, 959
SmoI CTYRAG 5 cut(s) 182, 491, 656, 785, 959
Sse9I AATT 9 cut(s) 12, 177, 196, 304, 576, 835, 844, 863, 975
SsiI CCGC 4 cut(s) 533, 666, 822, 1059
SspI AATATT 1 cut(s) 63
SspMI CTAG 5 cut(s) 329, 566, 597, 744, 1025
TaaI ACNGT 2 cut(s) 115, 728
TaiI ACGT 2 cut(s) 468, 911
TaqI TCGA 5 cut(s) 174, 249, 492, 960, 979
TasI AATT 9 cut(s) 12, 177, 196, 304, 576, 835, 844, 863, 975
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 1061
Tru1I TTAA 2 cut(s) 191, 1067
Tru9I TTAA 2 cut(s) 191, 1067
TscAI CASTG 3 cut(s) 163, 504, 836
TseI GCWGC 5 cut(s) 231, 600, 964, 1103, 1106
TspDTI ATGAA 6 cut(s) 434, 474, 527, 708, 866, 926
TspGWI ACGGA 2 cut(s) 259, 1054
TspRI CASTG 3 cut(s) 163, 504, 836
XapI RAATTY 3 cut(s) 177, 304, 835
XceI RCATGY 1 cut(s) 955
XhoI CTCGAG 2 cut(s) 491, 959
XmnI GAANNNNTTC 2 cut(s) 45, 684
XspI CTAG 5 cut(s) 329, 566, 597, 744, 1025
Zsp2I ATGCAT 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.