Rh1DG175300

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000491
Physical Location & Seq
Reverse (-)
35928342 .. 35928614
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG175300.1

Sequence Viewer

Length: 273 bp
ATGAATTCTCAGCAGTTTGTTGATGATGGCAGAGATCGTGTGGCTAATACAGCACCAACGGCCACTATTGAGGAGACTATCCGGCTTCATCAGGGTCATGACATAATTCTAGAGCAACTAGTTCTAATTAGAGAGACCATATTCCGGAGATTAGACGATCAGGGACGAAAATTATCTGATCAGGAACGGAAATTAGACGAGATGGCTGCATTTTTAGCCAGAGAGGGTTACACAGGGATTACAGGCGCATCTTCCACTCCTTCAGCGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.08

Weight (kDa)

5.04

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 144
AhlI ACTAGT 1 cut(s) 118
Alw26I GTCTC 2 cut(s) 68, 128
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 2 cut(s) 248, 268
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 20, 196
BceAI ACGGC 1 cut(s) 75
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 68, 128
BcuI ACTAGT 1 cut(s) 118
BfaI CTAG 2 cut(s) 110, 119
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmsI GCATC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 2 cut(s) 82, 145
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 2 cut(s) 68, 128
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 128
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 3 cut(s) 34, 157, 178
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 22
BspEI TCCGGA 1 cut(s) 144
BspHI TCATGA 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 128
BssMI GATC 3 cut(s) 34, 157, 178
BstDEI CTNAG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 2 cut(s) 248, 268
BstKTI GATC 3 cut(s) 37, 160, 181
BstMAI GTCTC 2 cut(s) 68, 128
BstMBI GATC 3 cut(s) 34, 157, 178
BstMWI GCNNNNNNNGC 3 cut(s) 50, 59, 215
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 62
CciI TCATGA 1 cut(s) 97
CfoI GCGC 2 cut(s) 248, 268
CviAII CATG 1 cut(s) 98
CviJI RGCY 5 cut(s) 44, 62, 85, 206, 218
CviKI_1 RGCY 5 cut(s) 44, 62, 85, 206, 218
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 36, 159, 180
DpnII GATC 3 cut(s) 34, 157, 178
EaeI YGGCCR 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 4
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 99, 104, 140
FaqI GGGAC 1 cut(s) 177
FatI CATG 1 cut(s) 97
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 2 cut(s) 110, 119
GlaI GCGC 2 cut(s) 247, 267
GluI GCNGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 82, 145
HhaI GCGC 2 cut(s) 248, 268
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 2 cut(s) 246, 266
HinP1I GCGC 2 cut(s) 246, 266
HpaII CCGG 2 cut(s) 82, 145
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 4 cut(s) 98, 110, 145, 182
HpyAV CCTTC 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 59, 215
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 2 cut(s) 246, 266
Kpn2I TCCGGA 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 34, 157, 178
LpnPI CCDG 8 cut(s) 77, 95, 146, 158, 167, 219, 228, 232
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 257
MaeI CTAG 2 cut(s) 110, 119
MaeIII GTNAC 1 cut(s) 227
MalI GATC 3 cut(s) 36, 159, 180
MboI GATC 3 cut(s) 34, 157, 178
MboII GAAGA 1 cut(s) 243
MluCI AATT 5 cut(s) 4, 105, 126, 170, 191
MnlI CCTC 2 cut(s) 64, 217
MroI TCCGGA 1 cut(s) 144
MspI CCGG 2 cut(s) 82, 145
MwoI GCNNNNNNNGC 3 cut(s) 50, 59, 215
NdeII GATC 3 cut(s) 34, 157, 178
NlaIII CATG 1 cut(s) 101
PagI TCATGA 1 cut(s) 97
PkrI GCNGC 1 cut(s) 208
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 3 cut(s) 34, 157, 178
SfaNI GCATC 1 cut(s) 257
SpeI ACTAGT 1 cut(s) 118
Sse9I AATT 5 cut(s) 4, 105, 126, 170, 191
SspMI CTAG 2 cut(s) 110, 119
TasI AATT 5 cut(s) 4, 105, 126, 170, 191
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 17, 77
TspGWI ACGGA 1 cut(s) 202
XapI RAATTY 1 cut(s) 4
XbaI TCTAGA 1 cut(s) 109
XspI CTAG 2 cut(s) 110, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.