Rh2CG502900

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
67437957 .. 67455927
17971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG502900.1

Sequence Viewer

Length: 960 bp
ATGGAAAACCAACAGGGCGAAAGCGTCGTCGTAAGCCTTCCATCGTCACTAGGTTGCTGTTCGGAGAGGTCAGCAGCTACAGCTTCGATTAGAAAATTGTGGTCAACAGTTACTTATCTAATTAGACAACTATGGTCAACCGTTATTTATCCAATTGGACAATGTTGCTGGGCACTGATATTTACTCCCAGTCGGGATATATGTGGAGATGTCTTTGACGAAGTGTCATCTCCAACATCTCCAATAGAGTACATTGTATTTGGGATTATATTTGGGCCTTTATGGCTGGCACATATAATTCTTCCACCCATCAAATATACATGGAAACTGCTAAGAAGGAAGGCGATTCTGACATGTATTGCAGTGTCGTTGGATCCTTTCTTCTTTTATATTCCAATCATCAATCAGGAAAACAAGTGTCTTGGAGTCGACAAAAAACTGAGGAATACACTCCTTGTGTTGCGATCAGTGACGGATTTTGCCAGTGTATTGCATATTGTATCTCAAGTTCGGGATTGGACCATCGACCCAAACCCCGACTCCCATACCGACACCGAATCCTACTTTGACTCTGAACTTAGGCCGACAACATCCCTGTTGCAAAAACTGATGAAGTCCATAGTAGATGCAATAAATGGGACGATGCCTTGGTTATCTCTGTCTCTCGTGATTGATTTTCTTGCTCTTCTTCCAGTTCCGCAGGTGGCAATAGTAGTTATCTTCTTCAAAATGGGGGGCTCTAAATTTTTCCTTCAAAGAACGATTCTCAATGTCCTTCTAATATTTCAATACATCCCCAGGATTTGTCAAATCTACCTATCAAGCAAGAAACTAGAAAGGGTTGGAATATGGGTTAAAGGTGCATTCAACTTTTTTCTTTACATCCTCGCTGGGCATGTAAGTTTTATCTCTAATACCACAGATATATTATATATATATATATATATATTATTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

319

Amino Acids

36.31

Weight (kDa)

8.56

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc36I ACCTGC 1 cut(s) 691
AccI GTMKAC 1 cut(s) 429
AciI CCGC 1 cut(s) 698
AclWI GGATC 2 cut(s) 368, 381
AcsI RAATTY 1 cut(s) 743
AfaI GTAC 1 cut(s) 251
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 5 cut(s) 727, 755, 788, 868, 956
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 797
AluBI AGCT 2 cut(s) 77, 83
AluI AGCT 2 cut(s) 77, 83
Alw26I GTCTC 1 cut(s) 666
AlwI GGATC 2 cut(s) 368, 381
AoxI GGCC 2 cut(s) 275, 581
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 743
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AspS9I GGNCC 2 cut(s) 275, 519
AvaII GGWCC 1 cut(s) 519
BaeGI GKGCMC 1 cut(s) 175
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 740
BauI CACGAG 1 cut(s) 665
BbvI GCAGC 1 cut(s) 86
BccI CCATC 3 cut(s) 49, 317, 530
BciT130I CCWGG 1 cut(s) 799
BcoDI GTCTC 1 cut(s) 666
BfaI CTAG 2 cut(s) 50, 833
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 691
BglI GCCNNNNNGGC 1 cut(s) 283
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 799
Bme18I GGWCC 1 cut(s) 519
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 275, 519
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 799
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 616, 633
BmuI ACTGGG 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 647, 797
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bse1I ACTGG 3 cut(s) 189, 483, 692
BseBI CCWGG 1 cut(s) 799
BseDI CCNNGG 2 cut(s) 647, 797
BseGI GGATG 3 cut(s) 590, 792, 882
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 3 cut(s) 189, 483, 692
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 2 cut(s) 168, 890
BshFI GGCC 2 cut(s) 277, 583
BslFI GGGAC 1 cut(s) 652
BsmAI GTCTC 1 cut(s) 666
BsmFI GGGAC 1 cut(s) 652
BsmI GAATGC 1 cut(s) 863
BsnI GGCC 2 cut(s) 277, 583
Bsp1286I GDGCHC 2 cut(s) 175, 740
Bsp143I GATC 2 cut(s) 373, 464
BspACI CCGC 1 cut(s) 698
BspANI GGCC 2 cut(s) 277, 583
BspCNI CTCAG 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 375
BspMI ACCTGC 1 cut(s) 691
BspPI GGATC 2 cut(s) 368, 381
BspQI GCTCTTC 1 cut(s) 690
BsrI ACTGG 3 cut(s) 189, 483, 692
BssECI CCNNGG 2 cut(s) 647, 797
BssMI GATC 2 cut(s) 373, 464
BssSI CACGAG 1 cut(s) 665
BssT1I CCWWGG 1 cut(s) 647
Bst2BI CACGAG 1 cut(s) 665
Bst2UI CCWGG 1 cut(s) 799
Bst4CI ACNGT 2 cut(s) 109, 142
Bst6I CTCTTC 1 cut(s) 690
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 3 cut(s) 332, 440, 578
BstF5I GGATG 3 cut(s) 590, 792, 882
BstKTI GATC 2 cut(s) 376, 467
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 2 cut(s) 373, 464
BstMWI GCNNNNNNNGC 2 cut(s) 80, 283
BstNI CCWGG 1 cut(s) 799
BstNSI RCATGY 2 cut(s) 357, 899
BstSCI CCNGG 1 cut(s) 797
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 2 cut(s) 277, 583
BtsCI GGATG 3 cut(s) 590, 792, 882
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 4 cut(s) 173, 369, 474, 490
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 1 cut(s) 288
Cfr13I GGNCC 2 cut(s) 275, 519
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 250
CviAII CATG 3 cut(s) 321, 354, 896
CviJI RGCY 7 cut(s) 36, 77, 83, 277, 286, 583, 738
CviKI_1 RGCY 7 cut(s) 36, 77, 83, 277, 286, 583, 738
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 3 cut(s) 332, 440, 578
DpnI GATC 2 cut(s) 375, 466
DpnII GATC 2 cut(s) 373, 464
DriI GACNNNNNGTC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 690
Eam1105I GACNNNNNGTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 740
Eco47I GGWCC 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 797
EcoT14I CCWWGG 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 3 cut(s) 324, 357, 899
FaqI GGGAC 1 cut(s) 652
FatI CATG 3 cut(s) 320, 353, 895
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 3 cut(s) 577, 779, 869
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 50, 833
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 2 cut(s) 172, 894
HaeIII GGCC 2 cut(s) 277, 583
HgaI GACGC 1 cut(s) 13
Hin1II CATG 3 cut(s) 324, 357, 899
HincII GTYRAC 3 cut(s) 105, 138, 430
HindII GTYRAC 3 cut(s) 105, 138, 430
HinfI GANTC 6 cut(s) 346, 426, 539, 557, 569, 763
Hpy166II GTNNAC 3 cut(s) 105, 138, 430
Hpy188I TCNGA 3 cut(s) 64, 351, 574
Hpy188III TCNNGA 4 cut(s) 194, 407, 512, 667
Hpy8I GTNNAC 3 cut(s) 105, 138, 430
Hpy99I CGWCG 2 cut(s) 29, 32
HpyAV CCTTC 5 cut(s) 47, 330, 334, 761, 785
HpyCH4III ACNGT 2 cut(s) 109, 142
HpyCH4V TGCA 5 cut(s) 362, 493, 601, 629, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 283
HpyF3I CTNAG 3 cut(s) 332, 440, 578
Hsp92II CATG 3 cut(s) 324, 357, 899
Kzo9I GATC 2 cut(s) 373, 464
LguI GCTCTTC 1 cut(s) 690
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 2 cut(s) 616, 633
MaeI CTAG 2 cut(s) 50, 833
MaeIII GTNAC 3 cut(s) 45, 109, 469
MalI GATC 2 cut(s) 375, 466
MboI GATC 2 cut(s) 373, 464
MboII GAAGA 6 cut(s) 293, 373, 677, 680, 712, 715
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 2 cut(s) 175, 740
MluCI AATT 5 cut(s) 95, 120, 153, 297, 743
MlyI GAGTC 3 cut(s) 435, 533, 563
MmeI TCCRAC 3 cut(s) 257, 351, 823
MnlI CCTC 3 cut(s) 60, 435, 896
MseI TTAA 1 cut(s) 855
MspR9I CCNGG 1 cut(s) 799
MunI CAATTG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 863
MvaI CCWGG 1 cut(s) 799
MwoI GCNNNNNNNGC 2 cut(s) 80, 283
NdeII GATC 2 cut(s) 373, 464
NlaIII CATG 3 cut(s) 324, 357, 899
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 2 cut(s) 45, 469
NspI RCATGY 2 cut(s) 357, 899
PaqCI CACCTGC 1 cut(s) 691
PciI ACATGT 1 cut(s) 353
PciSI GCTCTTC 1 cut(s) 690
PctI GAATGC 1 cut(s) 863
PfeI GAWTC 3 cut(s) 346, 557, 763
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 3 cut(s) 434, 533, 563
PpsI GAGTC 3 cut(s) 434, 533, 563
PscI ACATGT 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 797
PspFI CCCAGC 2 cut(s) 168, 890
PspGI CCWGG 1 cut(s) 797
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 2 cut(s) 275, 519
PsrI GAACNNNNNNTAC 2 cut(s) 492, 524
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SalI GTCGAC 1 cut(s) 428
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 1 cut(s) 855
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 373, 464
Sau96I GGNCC 2 cut(s) 275, 519
SchI GAGTC 3 cut(s) 435, 533, 563
ScrFI CCNGG 1 cut(s) 799
SduI GDGCHC 2 cut(s) 175, 740
SetI ASST 7 cut(s) 55, 71, 79, 85, 705, 819, 862
SfaNI GCATC 2 cut(s) 616, 633
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
Sse9I AATT 5 cut(s) 95, 120, 153, 297, 743
SsiI CCGC 1 cut(s) 698
SspI AATATT 1 cut(s) 783
SspMI CTAG 2 cut(s) 50, 833
StyD4I CCNGG 1 cut(s) 797
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 2 cut(s) 109, 142
TaqI TCGA 3 cut(s) 86, 429, 525
TasI AATT 5 cut(s) 95, 120, 153, 297, 743
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 3 cut(s) 346, 557, 763
Tru1I TTAA 1 cut(s) 855
Tru9I TTAA 1 cut(s) 855
TscAI CASTG 4 cut(s) 180, 369, 474, 490
TseFI GTSAC 2 cut(s) 45, 469
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 2 cut(s) 45, 469
TspDTI ATGAA 1 cut(s) 626
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 4 cut(s) 180, 369, 474, 490
VpaK11BI GGWCC 1 cut(s) 519
XapI RAATTY 1 cut(s) 743
XceI RCATGY 2 cut(s) 357, 899
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 2 cut(s) 50, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.