Rorug02G0454400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000491
Physical Location & Seq
Reverse (-)
58385721 .. 58389028
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0454400.1

Sequence Viewer

Length: 687 bp
ATGGCTCCGACAAGGAGGAAGAGGACGAAGCAGAGGAGAAAGGCGAGGGCTGGTTTTACCATCAAGATCAACAAAGAGGAACAAAAACAAGTTGAGGCCTCGGAGCGTGAGATTGCGAATCTGAATCTGGGCGACAAGAGCAAGACTCATGGTAGCAAGGGGCAAGAATCAGAGGGTTCTGGAGACATTAAAGGTGATGACTATTTGGGCGAGGATGTGTCAGGTAGCAAGGGGAAAGAATCAAAGGATCATCTAGAAACTGCCCGTGATGACTTTTTGGGCATAGATATTCCAGTGTCATGTAGAAGGAAATTAGCGGGTTGTGCCTGTTGTGGCGAGTATGATCACCTTAATGTAACCTGCCCATTCCTAAAATATATTCCTGAAGGCGCTAAAATTGGCCGTTGCTTTGAGACAATGTGCCGGGGTTGTCACCATATTGGAAAGGTGTGCTGTGTTAAGAGGGGGAAGTCTGTGGGAGGATATGCTATGCTGAAGAGGTGTGCTCATTGTTTATGTATTGGTCACTGGGAGTGGGAGGACTGTGAAGATTGTCCTAGACCCAAGGACGTCGTCTATGAGAAACCTGAATACTTAGATGGGGATGGGATTTCCTCAGAGTCTGAGGATGAGGATGAGGATGAGGATGCATTTCGACCCCGTAATCGTGCTCCATGGGGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.56

Weight (kDa)

6.41

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 573
Acc36I ACCTGC 1 cut(s) 368
AciI CCGC 1 cut(s) 317
AclWI GGATC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 400
AcuI CTGAAG 2 cut(s) 405, 515
AcyI GRCGYC 1 cut(s) 570
Alw21I GWGCWC 2 cut(s) 508, 673
Alw26I GTCTC 2 cut(s) 177, 407
AlwI GGATC 1 cut(s) 255
AlwNI CAGNNNCTG 1 cut(s) 623
AoxI GGCC 2 cut(s) 96, 400
AspLEI GCGC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 3 cut(s) 206, 338, 425
Bbv12I GWGCWC 2 cut(s) 508, 673
BccI CCATC 3 cut(s) 68, 593, 599
BceAI ACGGC 1 cut(s) 387
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 2 cut(s) 177, 407
BfaI CTAG 2 cut(s) 254, 558
BfoI RGCGCY 1 cut(s) 393
BfuAI ACCTGC 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 425
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 1 cut(s) 637
BmuI ACTGGG 1 cut(s) 538
BplI GAGNNNNNCTC 4 cut(s) 130, 162, 490, 522
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 425
BsaHI GRCGYC 1 cut(s) 570
BsaJI CCNNGG 4 cut(s) 99, 424, 564, 674
Bse1I ACTGG 2 cut(s) 293, 533
BseDI CCNNGG 4 cut(s) 99, 424, 564, 674
BseGI GGATG 6 cut(s) 220, 610, 634, 640, 646, 652
BseMII CTCAG 2 cut(s) 615, 630
BseNI ACTGG 2 cut(s) 293, 533
BseRI GAGGAG 1 cut(s) 49
BshFI GGCC 2 cut(s) 98, 402
BsiHKAI GWGCWC 2 cut(s) 508, 673
BsiSI CCGG 1 cut(s) 424
BsmAI GTCTC 2 cut(s) 177, 407
BsnI GGCC 2 cut(s) 98, 402
Bsp1286I GDGCHC 2 cut(s) 508, 673
Bsp143I GATC 3 cut(s) 66, 247, 343
Bsp19I CCATGG 1 cut(s) 674
BspACI CCGC 1 cut(s) 317
BspANI GGCC 2 cut(s) 98, 402
BspCNI CTCAG 2 cut(s) 616, 629
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 1 cut(s) 255
BsrI ACTGG 2 cut(s) 293, 533
BssECI CCNNGG 4 cut(s) 99, 424, 564, 674
BssMI GATC 3 cut(s) 66, 247, 343
BssNI GRCGYC 1 cut(s) 570
BssT1I CCWWGG 2 cut(s) 564, 674
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 2 cut(s) 14, 491
BstACI GRCGYC 1 cut(s) 570
BstDEI CTNAG 3 cut(s) 595, 616, 624
BstDSI CCRYGG 1 cut(s) 674
BstF5I GGATG 6 cut(s) 220, 610, 634, 640, 646, 652
BstH2I RGCGCY 1 cut(s) 393
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 3 cut(s) 69, 250, 346
BstMAI GTCTC 2 cut(s) 177, 407
BstMBI GATC 3 cut(s) 66, 247, 343
BstMWI GCNNNNNNNGC 2 cut(s) 138, 323
BstSCI CCNGG 1 cut(s) 423
BsuRI GGCC 2 cut(s) 98, 402
BtgI CCRYGG 1 cut(s) 674
BtsCI GGATG 6 cut(s) 220, 610, 634, 640, 646, 652
BtsIMutI CAGTG 2 cut(s) 300, 526
BveI ACCTGC 1 cut(s) 368
CaiI CAGNNNCTG 1 cut(s) 623
CfoI GCGC 1 cut(s) 392
CviAII CATG 3 cut(s) 149, 300, 675
CviJI RGCY 4 cut(s) 5, 50, 98, 402
CviKI_1 RGCY 4 cut(s) 5, 50, 98, 402
DdeI CTNAG 3 cut(s) 595, 616, 624
DpnI GATC 3 cut(s) 68, 249, 345
DpnII GATC 3 cut(s) 66, 247, 343
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 14, 491
EarI CTCTTC 2 cut(s) 14, 491
Eco130I CCWWGG 2 cut(s) 564, 674
Eco147I AGGCCT 1 cut(s) 98
Eco57I CTGAAG 2 cut(s) 405, 515
EcoT14I CCWWGG 2 cut(s) 564, 674
EcoT22I ATGCAT 1 cut(s) 652
ErhI CCWWGG 2 cut(s) 564, 674
FaeI CATG 3 cut(s) 152, 303, 678
FatI CATG 3 cut(s) 148, 299, 674
FauI CCCGC 1 cut(s) 310
FbaI TGATCA 1 cut(s) 343
FokI GGATG 6 cut(s) 227, 617, 641, 647, 653, 659
FspBI CTAG 2 cut(s) 254, 558
GlaI GCGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 393
HaeIII GGCC 2 cut(s) 98, 402
HapII CCGG 1 cut(s) 424
HhaI GCGC 1 cut(s) 392
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 3 cut(s) 152, 303, 678
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HinfI GANTC 6 cut(s) 118, 124, 145, 167, 239, 620
HpaII CCGG 1 cut(s) 424
HphI GGTGA 3 cut(s) 206, 338, 425
Hpy188I TCNGA 6 cut(s) 9, 103, 123, 172, 619, 625
Hpy188III TCNNGA 4 cut(s) 64, 180, 254, 383
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 2 cut(s) 300, 380
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 1 cut(s) 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 323
HpyF3I CTNAG 3 cut(s) 595, 616, 624
HpySE526I ACGT 1 cut(s) 570
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 3 cut(s) 152, 303, 678
HspAI GCGC 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 66, 247, 343
LmnI GCTCC 3 cut(s) 10, 103, 676
LweI GCATC 1 cut(s) 637
MaeI CTAG 2 cut(s) 254, 558
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 3 cut(s) 355, 431, 524
MalI GATC 3 cut(s) 68, 249, 345
MboI GATC 3 cut(s) 66, 247, 343
MboII GAAGA 3 cut(s) 31, 508, 560
MhlI GDGCHC 2 cut(s) 508, 673
MluCI AATT 2 cut(s) 311, 396
MlyI GAGTC 2 cut(s) 139, 629
MmeI TCCRAC 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 652
MseI TTAA 3 cut(s) 189, 351, 459
MslI CAYNNNNRTG 1 cut(s) 351
MspI CCGG 1 cut(s) 424
MspR9I CCNGG 1 cut(s) 425
MwoI GCNNNNNNNGC 2 cut(s) 138, 323
NciI CCSGG 1 cut(s) 425
NcoI CCATGG 1 cut(s) 674
NdeII GATC 3 cut(s) 66, 247, 343
NlaIII CATG 3 cut(s) 152, 303, 678
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 431, 524
NsiI ATGCAT 1 cut(s) 652
PceI AGGCCT 1 cut(s) 98
PfeI GAWTC 4 cut(s) 118, 124, 167, 239
PflFI GACNNNGTC 1 cut(s) 572
PleI GAGTC 2 cut(s) 139, 628
PpsI GAGTC 2 cut(s) 139, 628
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 623
PsyI GACNNNGTC 1 cut(s) 572
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 3 cut(s) 189, 351, 459
Sau3AI GATC 3 cut(s) 66, 247, 343
SchI GAGTC 2 cut(s) 139, 629
ScrFI CCNGG 1 cut(s) 425
SduI GDGCHC 2 cut(s) 508, 673
SetI ASST 8 cut(s) 196, 226, 351, 362, 450, 503, 573, 589
SfaNI GCATC 1 cut(s) 637
SmiMI CAYNNNNRTG 1 cut(s) 351
Sse9I AATT 2 cut(s) 311, 396
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 1 cut(s) 317
SspMI CTAG 2 cut(s) 254, 558
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 423
StyI CCWWGG 2 cut(s) 564, 674
TaaI ACNGT 1 cut(s) 545
TaiI ACGT 1 cut(s) 573
TaqI TCGA 1 cut(s) 655
TasI AATT 2 cut(s) 311, 396
TfiI GAWTC 4 cut(s) 118, 124, 167, 239
Tru1I TTAA 3 cut(s) 189, 351, 459
Tru9I TTAA 3 cut(s) 189, 351, 459
TscAI CASTG 2 cut(s) 300, 533
TseFI GTSAC 2 cut(s) 431, 524
Tsp45I GTSAC 2 cut(s) 431, 524
TspRI CASTG 2 cut(s) 300, 533
Tth111I GACNNNGTC 1 cut(s) 572
XbaI TCTAGA 1 cut(s) 253
XspI CTAG 2 cut(s) 254, 558
ZraI GACGTC 1 cut(s) 571
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.