FvH4_3g28952

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000491
Physical Location & Seq
Reverse (-)
22052013 .. 22053001
989 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28952.t1

Sequence Viewer

Length: 291 bp
ATGAGAGGAGATAAGAGAAAAGTGGCCGAGGACTTGAGAAGTACGGTCTCCAAATGTGGCACCCAATGGAATCTCAACAAGAATAATTCTCAGTACTTGGTTGGCGATGTAAGAGATATTGTGGCTAATACAAGTGCATCCACGACTACTGATCGAATTGAACAGACAGTCCAACATCATCAAGGTCACGATGTGCTTCTCGAGCAGCTGGGACGGAAGTTAGATGAGATGGCTGCATTCTTAGCTGAAACGGGGTATAAGGAGACATCTCCTCTTGCTACAGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.66

Weight (kDa)

6.27

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 24
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 43, 95
AgsI TTSAA 1 cut(s) 161
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 2 cut(s) 208, 245
AluI AGCT 2 cut(s) 208, 245
Alw26I GTCTC 2 cut(s) 52, 257
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 205, 233
AvaI CYCGRG 1 cut(s) 200
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 217, 220
BccI CCATC 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 52, 257
BfmI CTRYAG 1 cut(s) 279
BisI GCNGC 2 cut(s) 206, 234
BlsI GCNGC 2 cut(s) 207, 235
BmcAI AGTACT 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 104
BseRI GAGGAG 2 cut(s) 21, 261
BseXI GCAGC 2 cut(s) 217, 220
BseYI CCCAGC 1 cut(s) 208
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 52, 257
BsmFI GGGAC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 200
Bsp143I GATC 1 cut(s) 151
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 46, 169
BstDEI CTNAG 2 cut(s) 90, 241
BstF5I GGATG 1 cut(s) 137
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 2 cut(s) 52, 257
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 202, 242
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 217, 220
BsuRI GGCC 1 cut(s) 26
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 137
Csp6I GTAC 2 cut(s) 42, 94
CviJI RGCY 5 cut(s) 26, 125, 208, 233, 245
CviKI_1 RGCY 5 cut(s) 26, 125, 208, 233, 245
CviQI GTAC 2 cut(s) 42, 94
DdeI CTNAG 2 cut(s) 90, 241
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 200
FaiI YATR 1 cut(s) 258
FaqI GGGAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 206, 234
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 2 cut(s) 206, 234
GluI GCNGC 2 cut(s) 206, 234
GsaI CCCAGC 1 cut(s) 212
HaeIII GGCC 1 cut(s) 26
HinfI GANTC 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 188, 200
HpyCH4III ACNGT 2 cut(s) 46, 169
HpyCH4V TGCA 2 cut(s) 137, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 242
HpyF3I CTNAG 2 cut(s) 90, 241
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 1 cut(s) 194
Lsp1109I GCAGC 2 cut(s) 217, 220
LweI GCATC 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MluCI AATT 2 cut(s) 85, 156
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 2 cut(s) 22, 282
MspA1I CMGCKG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 202, 242
NdeII GATC 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 200
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 207, 235
PspFI CCCAGC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 2 cut(s) 43, 95
RsaNI GTAC 2 cut(s) 42, 94
SatI GCNGC 2 cut(s) 206, 234
Sau3AI GATC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 95
SetI ASST 4 cut(s) 187, 210, 247, 289
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 200
SmlI CTYRAG 2 cut(s) 34, 200
SmoI CTYRAG 2 cut(s) 34, 200
Sse9I AATT 2 cut(s) 85, 156
TaaI ACNGT 2 cut(s) 46, 169
TaqI TCGA 2 cut(s) 154, 201
TasI AATT 2 cut(s) 85, 156
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 70
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 2 cut(s) 205, 233
Tsp45I GTSAC 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 200
ZrmI AGTACT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.