RchiOBHm_Chr2g0156041

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000491
Physical Location & Seq
Forward (+)
72810069 .. 72811859
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52488

Sequence Viewer

Length: 882 bp
ATGAGAAAATTGTGGTCAACAGTTACTCATCTAATTAGACAACTATGGTCAACCGTTATTTATCCAATTGGAGAATGCTGCTGGCTAGTGATATTTACTCCCAGTTGGACAATTTGTGATATCTACGGACCCGACACAGACAGTCCAATAGACTACATTATACTTGGGACTGTATGTCTGGCACATATAATTCTTTTACCCATCAAATATACATGGAAACTGCTAAGAAGGAAGGCGATTCTGACATGTATTGCAGTGTCGTTGGATCCTTTCTTCTTTTATATTCCAATCATCAATCAGGAAAACAAGTGTCTTGGAGTTGACAAAAAACTGAGGAATACACTTCTTGTGTTGCGATCACTCACGGATTTTGCTAGTGTATTGCATATTGTATCTCAAGTTCGGGATTGGACCATCGACCCAAACCCCGACTCCCACACCGACACCGAATCCTACTTTGACTCTGAAGCCAGGCCGACATCATCGCTGTTGCAAAAACTGATGAAGTCCATAGTAGAGGCAATAAATGGGAGGATGCCTTGGTTATCTCTCTCTCTCCTGAATGATTTTCTTGCTCTTCTTCCAATTCCGCAGGTGGCAATAGTAGTTGTCTTCTTCAAAATGGGGGGCTCTAAATTTTTCCTTCAAAGAACGATTCTCAATGTCCTTCTAATATTTCAATACATCCCCAGGATTTGTCAAATCTACCTATCAAGCAAGAAACTAGAAAGGATTGGAATATGGGTTAAAGGTGCATTCAACTTTTTTCTTTACATCCTCGCTGGGCATGTAAGTTTTATCTCTAATATCACAGATTATATATATATACTAGAAGCTGCTCATTCCCTCTGGGTGTGGAAAAGTGGGTGGTTATCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

293

Amino Acids

33.77

Weight (kDa)

8.9

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 583
Acc36I ACCTGC 1 cut(s) 583
AciI CCGC 1 cut(s) 590
AclWI GGATC 2 cut(s) 260, 273
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 1 cut(s) 486
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 4 cut(s) 619, 647, 680, 760
AhdI GACNNNNNGTC 1 cut(s) 174
AjnI CCWGG 2 cut(s) 470, 689
AluBI AGCT 1 cut(s) 836
AluI AGCT 1 cut(s) 836
AlwI GGATC 2 cut(s) 260, 273
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 2 cut(s) 78, 836
ApoI RAATTY 1 cut(s) 635
AspS9I GGNCC 2 cut(s) 128, 411
AvaII GGWCC 2 cut(s) 128, 411
BamHI GGATCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 632
BbsI GAAGAC 1 cut(s) 604
BbvI GCAGC 2 cut(s) 65, 823
BccI CCATC 2 cut(s) 209, 422
BciT130I CCWGG 2 cut(s) 472, 691
BfaI CTAG 4 cut(s) 86, 375, 725, 830
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 2 cut(s) 79, 837
BlsI GCNGC 2 cut(s) 80, 838
Bme1390I CCNGG 2 cut(s) 472, 691
Bme18I GGWCC 2 cut(s) 128, 411
BmeRI GACNNNNNGTC 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 128, 411
BmiI GGNNCC 2 cut(s) 130, 267
BmrFI CCNGG 2 cut(s) 472, 691
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 525
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 604
BpuEI CTTGAG 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 539, 689
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bse1I ACTGG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 472, 691
BseDI CCNNGG 2 cut(s) 539, 689
BseGI GGATG 3 cut(s) 540, 684, 774
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 102
BseXI GCAGC 2 cut(s) 65, 823
BseYI CCCAGC 1 cut(s) 782
BshFI GGCC 1 cut(s) 475
BslFI GGGAC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 2 cut(s) 80, 755
BsnI GGCC 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 632
Bsp143I GATC 2 cut(s) 265, 356
BspACI CCGC 1 cut(s) 590
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 130, 267
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 2 cut(s) 260, 273
BspQI GCTCTTC 1 cut(s) 582
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 539, 689
BssMI GATC 2 cut(s) 265, 356
BssT1I CCWWGG 1 cut(s) 539
Bst2UI CCWGG 2 cut(s) 472, 691
Bst4CI ACNGT 4 cut(s) 22, 55, 143, 172
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 224, 332
BstF5I GGATG 3 cut(s) 540, 684, 774
BstKTI GATC 2 cut(s) 268, 359
BstMBI GATC 2 cut(s) 265, 356
BstNI CCWGG 2 cut(s) 472, 691
BstNSI RCATGY 2 cut(s) 249, 791
BstSCI CCNGG 2 cut(s) 470, 689
BstV1I GCAGC 2 cut(s) 65, 823
BstV2I GAAGAC 1 cut(s) 604
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 1 cut(s) 475
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 3 cut(s) 540, 684, 774
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 128, 411
CviAII CATG 3 cut(s) 213, 246, 788
CviJI RGCY 5 cut(s) 85, 470, 475, 630, 836
CviKI_1 RGCY 5 cut(s) 85, 470, 475, 630, 836
DdeI CTNAG 2 cut(s) 224, 332
DpnI GATC 2 cut(s) 267, 358
DpnII GATC 2 cut(s) 265, 356
DriI GACNNNNNGTC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 582
Eam1105I GACNNNNNGTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 632
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 128, 411
Eco57I CTGAAG 1 cut(s) 486
EcoRII CCWGG 2 cut(s) 470, 689
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 539
EcoT38I GRGCYC 1 cut(s) 632
ErhI CCWWGG 1 cut(s) 539
FaeI CATG 3 cut(s) 216, 249, 791
FaqI GGGAC 1 cut(s) 181
FatI CATG 3 cut(s) 212, 245, 787
Fnu4HI GCNGC 2 cut(s) 79, 837
FokI GGATG 3 cut(s) 547, 671, 761
FriOI GRGCYC 1 cut(s) 632
Fsp4HI GCNGC 2 cut(s) 79, 837
FspBI CTAG 4 cut(s) 86, 375, 725, 830
GluI GCNGC 2 cut(s) 79, 837
GsaI CCCAGC 1 cut(s) 786
HaeIII GGCC 1 cut(s) 475
Hin1II CATG 3 cut(s) 216, 249, 791
HincII GTYRAC 3 cut(s) 18, 51, 322
HindII GTYRAC 3 cut(s) 18, 51, 322
HinfI GANTC 5 cut(s) 238, 431, 449, 461, 655
Hpy166II GTNNAC 3 cut(s) 18, 51, 322
Hpy188I TCNGA 2 cut(s) 243, 466
Hpy188III TCNNGA 3 cut(s) 299, 404, 559
Hpy8I GTNNAC 3 cut(s) 18, 51, 322
HpyAV CCTTC 4 cut(s) 222, 226, 653, 677
HpyCH4III ACNGT 4 cut(s) 22, 55, 143, 172
HpyCH4V TGCA 4 cut(s) 254, 385, 493, 755
HpyF3I CTNAG 2 cut(s) 224, 332
Hsp92II CATG 3 cut(s) 216, 249, 791
Kzo9I GATC 2 cut(s) 265, 356
LguI GCTCTTC 1 cut(s) 582
Lsp1109I GCAGC 2 cut(s) 65, 823
LweI GCATC 1 cut(s) 525
MaeI CTAG 4 cut(s) 86, 375, 725, 830
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 267, 358
MboI GATC 2 cut(s) 265, 356
MboII GAAGA 5 cut(s) 265, 569, 572, 604, 607
MfeI CAATTG 1 cut(s) 66
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 632
MluCI AATT 7 cut(s) 8, 33, 66, 111, 189, 585, 635
MlyI GAGTC 2 cut(s) 425, 455
MmeI TCCRAC 2 cut(s) 86, 243
MnlI CCTC 5 cut(s) 327, 511, 525, 788, 857
MseI TTAA 2 cut(s) 747, 880
MspR9I CCNGG 2 cut(s) 472, 691
MunI CAATTG 1 cut(s) 66
Mva1269I GAATGC 2 cut(s) 80, 755
MvaI CCWGG 2 cut(s) 472, 691
NdeII GATC 2 cut(s) 265, 356
NlaIII CATG 3 cut(s) 216, 249, 791
NlaIV GGNNCC 2 cut(s) 130, 267
NspI RCATGY 2 cut(s) 249, 791
PaqCI CACCTGC 1 cut(s) 583
PciI ACATGT 1 cut(s) 245
PciSI GCTCTTC 1 cut(s) 582
PctI GAATGC 2 cut(s) 80, 755
PfeI GAWTC 3 cut(s) 238, 449, 655
PkrI GCNGC 2 cut(s) 80, 838
PleI GAGTC 2 cut(s) 425, 455
PpsI GAGTC 2 cut(s) 425, 455
PscI ACATGT 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 470, 689
PspFI CCCAGC 1 cut(s) 782
PspGI CCWGG 2 cut(s) 470, 689
PspN4I GGNNCC 2 cut(s) 130, 267
PspPI GGNCC 2 cut(s) 128, 411
PsrI GAACNNNNNNTAC 2 cut(s) 384, 416
PsuI RGATCY 1 cut(s) 265
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 747, 880
SatI GCNGC 2 cut(s) 79, 837
Sau3AI GATC 2 cut(s) 265, 356
Sau96I GGNCC 2 cut(s) 128, 411
SchI GAGTC 2 cut(s) 425, 455
ScrFI CCNGG 2 cut(s) 472, 691
SduI GDGCHC 1 cut(s) 632
SetI ASST 4 cut(s) 597, 711, 754, 838
SfaNI GCATC 1 cut(s) 525
SinI GGWCC 2 cut(s) 128, 411
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 7 cut(s) 8, 33, 66, 111, 189, 585, 635
SsiI CCGC 1 cut(s) 590
SspI AATATT 1 cut(s) 675
SspMI CTAG 4 cut(s) 86, 375, 725, 830
StyD4I CCNGG 2 cut(s) 470, 689
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 4 cut(s) 22, 55, 143, 172
TaqI TCGA 1 cut(s) 417
TasI AATT 7 cut(s) 8, 33, 66, 111, 189, 585, 635
TfiI GAWTC 3 cut(s) 238, 449, 655
Tru1I TTAA 2 cut(s) 747, 880
Tru9I TTAA 2 cut(s) 747, 880
TscAI CASTG 1 cut(s) 261
TseI GCWGC 2 cut(s) 78, 836
TspDTI ATGAA 1 cut(s) 518
TspGWI ACGGA 2 cut(s) 141, 380
TspRI CASTG 1 cut(s) 261
VpaK11BI GGWCC 2 cut(s) 128, 411
XapI RAATTY 1 cut(s) 635
XceI RCATGY 2 cut(s) 249, 791
XspI CTAG 4 cut(s) 86, 375, 725, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.