Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000491

Physical Location & Seq

Genomic Coordinates Forward (+)

32115840 .. 32118047

Gene Structure 2208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40661.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTGGATGTCAGATAGAGATCTGTCCGAGGACACAAAGACAAAAATCAGGGCGGAGAAATTCATAGATCAACCGGAGGATCTAAACTTAATATGCAGTGCGGGATTTGATGCTTTAAACTCTTTGAAGAGTTGTATAGCCATGAAAGTTCTAAAGAAAGTGCCCTTGTTTGAGGGTGTCGATGAAAGTAGTTTGAAACATATCACGGGTTACATGGAACCAGTTATCTACACCAAGAATAGCTACATCCTTCGAGCGGGTGGTCCGTGTACTATGCTTCTCTTCATTGTAGAAGGCGTAATCGAATTGACCGACAGAACGTCGTCTAACGGTGCCGAAACGATGACCAAGCGTCTTCAGAAAGGTGACTATTATGGAGACGGTGTGCTGGATTTGGCATCATTGAACCTTAAGCTCGGCGCGGGAGTCTGGGAGAAAAGCAATTCGAACCAAGATGTCAAATGTCTTACCAAAGTCGAGGCCTTTCTTACCAATTTCCGCATGTTAGATAACTTTCTAAGAGACTGCAGCATACGCCTGAATGACAACGTGAAGCCGACAGTTCCCCCTAACAACACTGATGAGACATCAAATGAGGAGATTGAAGAGTCAAAACAGATGGAGATGAAGACCGTGAAATTAGATCAAGGTAGAGGACAACCAAGAGAAGACGTTGCGATTACGGGTGCATCTACATCCAGTACTACTGTTGAACAGATGCTTAGTGAGCAGCTGGTTCTAGTCCGACAGATTCGTGATGATATGGCTACACAGGGACGAAGATTAGATGGCATGGCTGCATTCTTGTCCACGTGGGGATATCCAGGCGGCATACCGGCTCCTCCTACACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008455 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009312 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0030246 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

MGAT2

Protein Analysis

285

Amino Acids

31.53

Weight (kDa)

4.96

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	76 - 127	1.8e-06	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis	RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata	RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora	Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa	Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha	Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana	Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	257
AccII	CGCG	1 cut(s)	422
AciI	CCGC	6 cut(s)	53, 101, 257, 422, 499, 828
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	341
AcvI	CACGTG	1 cut(s)	813
AfaI	GTAC	2 cut(s)	271, 703
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	5 cut(s)	127, 196, 406, 605, 713
AhdI	GACNNNNNGTC	2 cut(s)	319, 351
AjnI	CCWGG	1 cut(s)	823
AluBI	AGCT	3 cut(s)	243, 415, 733
AluI	AGCT	3 cut(s)	243, 415, 733
Alw26I	GTCTC	3 cut(s)	372, 516, 578
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	480
ApeKI	GCWGC	3 cut(s)	528, 730, 797
ApoI	RAATTY	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	377
AsuII	TTCGAA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	332
BbrPI	CACGTG	1 cut(s)	813
BbsI	GAAGAC	3 cut(s)	347, 635, 675
BbvI	GCAGC	3 cut(s)	540, 742, 784
BccI	CCATC	2 cut(s)	613, 782
BciT130I	CCWGG	1 cut(s)	825
BcoDI	GTCTC	3 cut(s)	372, 516, 578
BfaI	CTAG	1 cut(s)	740
BfmI	CTRYAG	1 cut(s)	526
BfrI	CTTAAG	1 cut(s)	410
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	4 cut(s)	529, 731, 798, 829
BlsI	GCNGC	4 cut(s)	530, 732, 799, 830
BmcAI	AGTACT	1 cut(s)	703
Bme1390I	CCNGG	1 cut(s)	825
Bme18I	GGWCC	1 cut(s)	263
BmeRI	GACNNNNNGTC	2 cut(s)	319, 351
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	219, 334, 840
BmrFI	CCNGG	1 cut(s)	825
BmsI	GCATC	4 cut(s)	100, 407, 698, 708
BpiI	GAAGAC	3 cut(s)	347, 635, 675
Bpu14I	TTCGAA	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	813
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse118I	RCCGGY	1 cut(s)	835
Bse1I	ACTGG	2 cut(s)	221, 699
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	12, 246, 695
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	221, 699
BseRI	GAGGAG	2 cut(s)	611, 831
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	540, 742, 784
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	482
BshNI	GGYRCC	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	74, 836
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	3 cut(s)	372, 516, 578
BsmBI	CGTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	789
BsmI	GAATGC	1 cut(s)	800
BsnI	GGCC	1 cut(s)	482
Bsp119I	TTCGAA	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	4 cut(s)	19, 67, 79, 643
BspACI	CCGC	6 cut(s)	53, 101, 257, 422, 499, 828
BspANI	GGCC	1 cut(s)	482
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	3 cut(s)	219, 334, 840
BspMAI	CTGCAG	1 cut(s)	530
BspPI	GGATC	1 cut(s)	87
BspT104I	TTCGAA	1 cut(s)	446
BspT107I	GGYRCC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	835
BsrI	ACTGG	2 cut(s)	221, 699
BssAI	RCCGGY	1 cut(s)	835
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	4 cut(s)	19, 67, 79, 643
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	5 cut(s)	332, 383, 562, 634, 709
Bst6I	CTCTTC	3 cut(s)	122, 287, 600
BstAFI	CTTAAG	1 cut(s)	410
BstBAI	YACGTR	1 cut(s)	813
BstBI	TTCGAA	1 cut(s)	446
BstDEI	CTNAG	2 cut(s)	518, 722
BstF5I	GGATG	3 cut(s)	12, 246, 695
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	4 cut(s)	22, 70, 82, 646
BstMAI	GTCTC	3 cut(s)	372, 516, 578
BstMBI	GATC	4 cut(s)	19, 67, 79, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	534, 727
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	823
BstSFI	CTRYAG	1 cut(s)	526
BstSLI	GKGCMC	1 cut(s)	165
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	3 cut(s)	540, 742, 784
BstV2I	GAAGAC	3 cut(s)	347, 635, 675
BstX2I	RGATCY	2 cut(s)	19, 79
BstYI	RGATCY	2 cut(s)	19, 79
BsuRI	GGCC	1 cut(s)	482
BtsCI	GGATG	3 cut(s)	12, 246, 695
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 576
CfoI	GCGC	1 cut(s)	422
Cfr10I	RCCGGY	1 cut(s)	835
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	270, 702
CviAII	CATG	4 cut(s)	142, 214, 502, 793
CviJI	RGCY	9 cut(s)	140, 243, 415, 482, 556, 733, 767, 797, 839
CviKI_1	RGCY	9 cut(s)	140, 243, 415, 482, 556, 733, 767, 797, 839
CviQI	GTAC	2 cut(s)	270, 702
DdeI	CTNAG	2 cut(s)	518, 722
DpnI	GATC	4 cut(s)	21, 69, 81, 645
DpnII	GATC	4 cut(s)	19, 67, 79, 643
DraI	TTTAAA	1 cut(s)	117
DriI	GACNNNNNGTC	2 cut(s)	319, 351
Eam1104I	CTCTTC	3 cut(s)	122, 287, 600
Eam1105I	GACNNNNNGTC	2 cut(s)	319, 351
EarI	CTCTTC	3 cut(s)	122, 287, 600
EciI	GGCGGA	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	482
Eco32I	GATATC	1 cut(s)	821
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	341
Eco72I	CACGTG	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	823
EcoRV	GATATC	1 cut(s)	821
Esp3I	CGTCTC	1 cut(s)	372
FaeI	CATG	4 cut(s)	145, 217, 505, 796
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	4 cut(s)	141, 213, 501, 792
FauI	CCCGC	3 cut(s)	94, 250, 415
Fnu4HI	GCNGC	4 cut(s)	529, 731, 798, 829
FokI	GGATG	3 cut(s)	19, 233, 682
Fsp4HI	GCNGC	4 cut(s)	529, 731, 798, 829
FspBI	CTAG	1 cut(s)	740
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	4 cut(s)	529, 731, 798, 829
HaeIII	GGCC	1 cut(s)	482
HapII	CCGG	2 cut(s)	74, 836
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	4 cut(s)	145, 217, 505, 796
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	426, 608, 751
HpaII	CCGG	2 cut(s)	74, 836
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	270, 810
Hpy188I	TCNGA	4 cut(s)	13, 28, 360, 746
Hpy188III	TCNNGA	1 cut(s)	755
Hpy8I	GTNNAC	2 cut(s)	270, 810
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	260, 287
HpyCH4III	ACNGT	5 cut(s)	332, 383, 562, 634, 709
HpyCH4IV	ACGT	4 cut(s)	320, 549, 672, 812
HpyCH4V	TGCA	4 cut(s)	96, 528, 689, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	534, 727
HpyF3I	CTNAG	2 cut(s)	518, 722
HpySE526I	ACGT	4 cut(s)	320, 549, 672, 812
Hsp92II	CATG	4 cut(s)	145, 217, 505, 796
HspAI	GCGC	1 cut(s)	420
Kzo9I	GATC	4 cut(s)	19, 67, 79, 643
LmnI	GCTCC	1 cut(s)	844
Lsp1109I	GCAGC	3 cut(s)	540, 742, 784
LweI	GCATC	4 cut(s)	100, 407, 698, 708
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	4 cut(s)	320, 549, 672, 812
MaeIII	GTNAC	2 cut(s)	209, 365
MalI	GATC	4 cut(s)	21, 69, 81, 645
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	4 cut(s)	19, 67, 79, 643
MboII	GAAGA	7 cut(s)	139, 274, 347, 617, 640, 680, 792
MflI	RGATCY	2 cut(s)	19, 79
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	5 cut(s)	59, 305, 442, 493, 638
MlyI	GAGTC	2 cut(s)	435, 617
MmeI	TCCRAC	1 cut(s)	769
MnlI	CCTC	7 cut(s)	22, 70, 166, 472, 589, 647, 852
MseI	TTAA	3 cut(s)	89, 116, 411
MspA1I	CMGCKG	1 cut(s)	733
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	2 cut(s)	74, 836
MspR9I	CCNGG	1 cut(s)	825
Mva1269I	GAATGC	1 cut(s)	800
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	534, 727
NdeII	GATC	4 cut(s)	19, 67, 79, 643
NlaIII	CATG	4 cut(s)	145, 217, 505, 796
NlaIV	GGNNCC	3 cut(s)	219, 334, 840
NmeAIII	GCCGAG	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	800
PfeI	GAWTC	1 cut(s)	751
PkrI	GCNGC	4 cut(s)	530, 732, 799, 830
PleI	GAGTC	2 cut(s)	434, 616
PmaCI	CACGTG	1 cut(s)	813
PmlI	CACGTG	1 cut(s)	813
PpsI	GAGTC	2 cut(s)	434, 616
Ppu21I	YACGTR	1 cut(s)	813
Psp6I	CCWGG	1 cut(s)	823
PspCI	CACGTG	1 cut(s)	813
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	3 cut(s)	219, 334, 840
PspPI	GGNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	530
PsuI	RGATCY	2 cut(s)	19, 79
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	2 cut(s)	271, 703
RsaNI	GTAC	2 cut(s)	270, 702
SaqAI	TTAA	3 cut(s)	89, 116, 411
SatI	GCNGC	4 cut(s)	529, 731, 798, 829
Sau3AI	GATC	4 cut(s)	19, 67, 79, 643
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	703
SchI	GAGTC	2 cut(s)	435, 617
ScrFI	CCNGG	1 cut(s)	825
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	4 cut(s)	100, 407, 698, 708
SfcI	CTRYAG	1 cut(s)	526
SfuI	TTCGAA	1 cut(s)	446
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	5 cut(s)	59, 305, 442, 493, 638
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	6 cut(s)	53, 101, 257, 422, 499, 828
SspMI	CTAG	1 cut(s)	740
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	823
TaaI	ACNGT	5 cut(s)	332, 383, 562, 634, 709
TaiI	ACGT	4 cut(s)	323, 552, 675, 815
TaqI	TCGA	5 cut(s)	180, 253, 303, 446, 477
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	5 cut(s)	59, 305, 442, 493, 638
TatI	WGTACW	2 cut(s)	269, 701
TauI	GCSGC	1 cut(s)	831
TfiI	GAWTC	1 cut(s)	751
Tru1I	TTAA	3 cut(s)	89, 116, 411
Tru9I	TTAA	3 cut(s)	89, 116, 411
TscAI	CASTG	2 cut(s)	103, 583
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	3 cut(s)	528, 730, 797
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	5 cut(s)	52, 158, 198, 274, 641
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	103, 583
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	59
XceI	RCATGY	1 cut(s)	505
XspI	CTAG	1 cut(s)	740
ZrmI	AGTACT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.