Rmu_sc0011512.1_g000007

voltage-gated potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011512.1
OG0000491
Physical Location & Seq
Reverse (-)
23359 .. 25951
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011512.1_g000007.1.cds

Sequence Viewer

Length: 1449 bp
atggtgaagataatattttcaagagtaattcgctctatacatgaaattctaagttggaaatggatatttgtggtatcatgcattgcagtctcattggatcctttgttcctttacattccgatcatcgagggaaacaagtgccttggaaccgacagaaatttgaggatagtaactctagttctccgatcacttatagatatcactttcataactcacattattggtctaatttctgattggaaatactctgacggcccccaaaggcacgtctcctacttcgactctcactttgagccagcatcaggcttgctttggaaactaaagttccttaaacaagccatagctaagaggatgccatggttatctggtactgtcatgatccactttcttgctattcttcctatcccacaggtggcaatagtatatgtctttgctcgaattggaagctctgaattttttctcaaaactgcgattatcaacttatttcttgtcttccaatatttcccgagggtttgccaaatctacctatcaagtaagaaactcaacatgaccggaacatgggttaaaggtggattcaatttgtttttgtatatccttgcaagtcatgttattgcagcctactggtatttttttgcaattcagagagagatctcatgttggcaccaggcgtgtgaaaaaagtgcaggatgcctagcaacttatgcttgtggaggcagtacttcaatgaatatcacattccaaaatgagctatgcccaatattttcaccaaatactacattatttgattttggaatatttcttgatattcttcagtctgatatgaagacagcaatcaggaaagacataaaagaatggaacatagccgggagatacatagatcatgatgtggatgttcgatttgtcaataacatttgtggaggaaacatcgtattagtcctgtcggaatttttccggctaaatgctctaaagaaagtacccatgcttcaaaatgtgccagagttcgggttgatacttatcagccaatatctctatctagaaacctacgatgagaatgcagttgttgcccgagcaggaaaaccgattgattcgatgttcttcattatagatggcgtgattgattggactgacgagactaacatggataccgatgctgaaaccacgggttcttcttcctcatctaatagcagcaagcttacgaacggtgattattttggacaagaacttttgagttgggcagcatttaactatgggagctcttattttagccctgttcctacttcgactcgagatgccaaatgtcgaacaaaagtagaagtcctgcagctgagtagggggaccttagtaaatacagaagtctgcgattacatgcctcagagtgattctctggcgcacttggaggagttggcagttccccataaccacattgatcagataatagacgaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
6PF2K Ank_2 Ank_4 Ank_5 F-box-like His_Phos_1 LRR_6 PAS_9 Pkinase Pkinase_Tyr RGS cNMP_binding

Protein Analysis

482

Amino Acids

54.71

Weight (kDa)

6.01

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 660
AclWI GGATC 3 cut(s) 92, 105, 373
AcsI RAATTY 4 cut(s) 45, 157, 452, 944
AcuI CTGAAG 1 cut(s) 794
AfaI GTAC 3 cut(s) 370, 718, 975
AfiI CCNNNNNNNGG 4 cut(s) 302, 412, 558, 1001
AgsI TTSAA 4 cut(s) 21, 577, 723, 986
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 663
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 6 cut(s) 344, 447, 748, 1192, 1254, 1324
AluI AGCT 6 cut(s) 344, 447, 748, 1192, 1254, 1324
Alw21I GWGCWC 1 cut(s) 1256
Alw26I GTCTC 3 cut(s) 94, 274, 1124
AlwI GGATC 3 cut(s) 92, 105, 373
Ama87I CYCGRG 3 cut(s) 505, 1065, 1284
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 4 cut(s) 614, 1185, 1235, 1321
ApoI RAATTY 4 cut(s) 45, 157, 452, 944
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
Asp700I GAANNNNTTC 1 cut(s) 456
AspLEI GCGC 1 cut(s) 1390
AspS9I GGNCC 2 cut(s) 254, 1335
AsuC2I CCSGG 1 cut(s) 865
AsuHPI GGTGA 3 cut(s) 16, 756, 1214
AvaI CYCGRG 3 cut(s) 505, 1065, 1284
AvaII GGWCC 1 cut(s) 1335
BamHI GGATCC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 660
BanII GRGCYC 1 cut(s) 1256
BarI GAAGNNNNNNTAC 2 cut(s) 966, 998
BbsI GAAGAC 2 cut(s) 484, 830
Bbv12I GWGCWC 1 cut(s) 1256
BbvI GCAGC 4 cut(s) 626, 1197, 1247, 1333
BccI CCATC 1 cut(s) 1100
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 1034, 1068
BciT130I CCWGG 1 cut(s) 665
BciVI GTATCC 1 cut(s) 1135
BclI TGATCA 1 cut(s) 1426
BcnI CCSGG 1 cut(s) 865
BcoDI GTCTC 3 cut(s) 94, 274, 1124
BfaI CTAG 3 cut(s) 176, 692, 1034
BfmI CTRYAG 1 cut(s) 1319
BfuI GTATCC 1 cut(s) 1135
BglII AGATCT 1 cut(s) 648
BisI GCNGC 4 cut(s) 615, 1186, 1236, 1322
BlsI GCNGC 4 cut(s) 616, 1187, 1237, 1323
BmcAI AGTACT 1 cut(s) 718
Bme1390I CCNGG 2 cut(s) 665, 865
Bme18I GGWCC 1 cut(s) 1335
BmeT110I CYCGRG 3 cut(s) 505, 1065, 1284
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 254, 1335
BmiI GGNNCC 5 cut(s) 99, 148, 256, 662, 1336
BmrFI CCNGG 2 cut(s) 665, 865
BmsI GCATC 5 cut(s) 308, 342, 677, 1138, 1279
BpiI GAAGAC 2 cut(s) 484, 830
BplI GAGNNNNNCTC 2 cut(s) 1366, 1398
BpuMI CCSGG 1 cut(s) 865
BsaBI GATNNNNATC 1 cut(s) 1013
BsaJI CCNNGG 4 cut(s) 142, 356, 506, 1158
BsaWI WCCGGW 1 cut(s) 551
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 412, 558, 1001
Bse1I ACTGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 1013
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 4 cut(s) 142, 356, 506, 1158
BseGI GGATG 3 cut(s) 357, 692, 895
BseJI GATNNNNATC 1 cut(s) 1013
BseLI CCNNNNNNNGG 4 cut(s) 302, 412, 558, 1001
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 1316, 1385
BseNI ACTGG 1 cut(s) 626
BseRI GAGGAG 1 cut(s) 1412
BseXI GCAGC 4 cut(s) 626, 1197, 1247, 1333
BsgI GTGCAG 1 cut(s) 702
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 1256
BsiHKCI CYCGRG 3 cut(s) 505, 1065, 1284
BsiSI CCGG 3 cut(s) 552, 864, 952
BslFI GGGAC 1 cut(s) 1348
BslI CCNNNNNNNGG 4 cut(s) 302, 412, 558, 1001
BsmAI GTCTC 3 cut(s) 94, 274, 1124
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 1348
BsmI GAATGC 1 cut(s) 1057
BsnI GGCC 1 cut(s) 255
BsoBI CYCGRG 3 cut(s) 505, 1065, 1284
Bsp1286I GDGCHC 1 cut(s) 1256
Bsp143I GATC 7 cut(s) 97, 120, 185, 378, 648, 877, 1426
Bsp19I CCATGG 1 cut(s) 356
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 1317, 1384
BspHI TCATGA 2 cut(s) 375, 880
BspLI GGNNCC 5 cut(s) 99, 148, 256, 662, 1336
BspMAI CTGCAG 1 cut(s) 1323
BspPI GGATC 3 cut(s) 92, 105, 373
BspT107I GGYRCC 1 cut(s) 660
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 1 cut(s) 626
BssECI CCNNGG 4 cut(s) 142, 356, 506, 1158
BssMI GATC 7 cut(s) 97, 120, 185, 378, 648, 877, 1426
BssT1I CCWWGG 2 cut(s) 142, 356
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 2 cut(s) 373, 1202
BstAPI GCANNNNNTGC 2 cut(s) 701, 1061
BstC8I GCNNGC 3 cut(s) 297, 308, 1190
BstDEI CTNAG 5 cut(s) 50, 345, 1325, 1339, 1371
BstDSI CCRYGG 2 cut(s) 356, 1158
BstF5I GGATG 3 cut(s) 357, 692, 895
BstHHI GCGC 1 cut(s) 1390
BstKTI GATC 7 cut(s) 100, 123, 188, 381, 651, 880, 1429
BstMAI GTCTC 3 cut(s) 94, 274, 1124
BstMBI GATC 7 cut(s) 97, 120, 185, 378, 648, 877, 1426
BstMWI GCNNNNNNNGC 2 cut(s) 701, 1061
BstNI CCWGG 1 cut(s) 665
BstNSI RCATGY 1 cut(s) 1369
BstSCI CCNGG 2 cut(s) 663, 863
BstSFI CTRYAG 1 cut(s) 1319
BstV1I GCAGC 4 cut(s) 626, 1197, 1247, 1333
BstV2I GAAGAC 2 cut(s) 484, 830
BstX2I RGATCY 2 cut(s) 97, 648
BstYI RGATCY 2 cut(s) 97, 648
BsuI GTATCC 1 cut(s) 1135
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 2 cut(s) 356, 1158
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 3 cut(s) 357, 692, 895
Cac8I GCNNGC 3 cut(s) 297, 308, 1190
CciI TCATGA 2 cut(s) 375, 880
CfoI GCGC 1 cut(s) 1390
Cfr13I GGNCC 2 cut(s) 254, 1335
Csp6I GTAC 3 cut(s) 369, 717, 974
CviQI GTAC 3 cut(s) 369, 717, 974
DdeI CTNAG 5 cut(s) 50, 345, 1325, 1339, 1371
DpnI GATC 7 cut(s) 99, 122, 187, 380, 650, 879, 1428
DpnII GATC 7 cut(s) 97, 120, 185, 378, 648, 877, 1426
Ecl136II GAGCTC 1 cut(s) 1254
Eco130I CCWWGG 2 cut(s) 142, 356
Eco24I GRGCYC 1 cut(s) 1256
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 1335
Eco53kI GAGCTC 1 cut(s) 1254
Eco57I CTGAAG 1 cut(s) 794
Eco88I CYCGRG 3 cut(s) 505, 1065, 1284
EcoICRI GAGCTC 1 cut(s) 1254
EcoO109I RGGNCCY 1 cut(s) 1335
EcoRII CCWGG 1 cut(s) 663
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 142, 356
EcoT22I ATGCAT 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 1256
ErhI CCWWGG 2 cut(s) 142, 356
Esp3I CGTCTC 1 cut(s) 274
FaqI GGGAC 1 cut(s) 1348
FbaI TGATCA 1 cut(s) 1426
Fnu4HI GCNGC 4 cut(s) 615, 1186, 1236, 1322
FokI GGATG 3 cut(s) 364, 699, 902
FriOI GRGCYC 1 cut(s) 1256
Fsp4HI GCNGC 4 cut(s) 615, 1186, 1236, 1322
FspBI CTAG 3 cut(s) 176, 692, 1034
GlaI GCGC 1 cut(s) 1389
GluI GCNGC 4 cut(s) 615, 1186, 1236, 1322
HaeIII GGCC 1 cut(s) 255
HapII CCGG 3 cut(s) 552, 864, 952
HhaI GCGC 1 cut(s) 1390
Hin6I GCGC 1 cut(s) 1388
HinP1I GCGC 1 cut(s) 1388
HindIII AAGCTT 1 cut(s) 1190
HinfI GANTC 5 cut(s) 281, 573, 1085, 1282, 1379
HpaII CCGG 3 cut(s) 552, 864, 952
HphI GGTGA 3 cut(s) 16, 756, 1214
Hpy188III TCNNGA 8 cut(s) 21, 376, 505, 800, 835, 881, 1034, 1286
HpyCH4III ACNGT 2 cut(s) 373, 1202
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 8 cut(s) 81, 86, 599, 614, 635, 683, 1055, 1321
HpyF10VI GCNNNNNNNGC 2 cut(s) 701, 1061
HpyF3I CTNAG 5 cut(s) 50, 345, 1325, 1339, 1371
HpySE526I ACGT 1 cut(s) 267
HspAI GCGC 1 cut(s) 1388
Ksp22I TGATCA 1 cut(s) 1426
Kzo9I GATC 7 cut(s) 97, 120, 185, 378, 648, 877, 1426
LmnI GCTCC 1 cut(s) 1251
Lsp1109I GCAGC 4 cut(s) 626, 1197, 1247, 1333
LweI GCATC 5 cut(s) 308, 342, 677, 1138, 1279
MaeI CTAG 3 cut(s) 176, 692, 1034
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 169
MalI GATC 7 cut(s) 99, 122, 187, 380, 650, 879, 1428
MboI GATC 7 cut(s) 97, 120, 185, 378, 648, 877, 1426
MboII GAAGA 8 cut(s) 19, 389, 484, 800, 835, 1087, 1158, 1161
MflI RGATCY 2 cut(s) 97, 648
MhlI GDGCHC 1 cut(s) 1256
MluCI AATT 9 cut(s) 27, 45, 157, 228, 438, 452, 577, 636, 944
MlyI GAGTC 2 cut(s) 275, 1276
MmeI TCCRAC 2 cut(s) 35, 921
Mph1103I ATGCAT 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 3 cut(s) 330, 564, 1242
MspA1I CMGCKG 1 cut(s) 1324
MspI CCGG 3 cut(s) 552, 864, 952
MspR9I CCNGG 2 cut(s) 665, 865
Mva1269I GAATGC 1 cut(s) 1057
MvaI CCWGG 1 cut(s) 665
MwoI GCNNNNNNNGC 2 cut(s) 701, 1061
NciI CCSGG 1 cut(s) 865
NcoI CCATGG 1 cut(s) 356
NdeII GATC 7 cut(s) 97, 120, 185, 378, 648, 877, 1426
NlaIV GGNNCC 5 cut(s) 99, 148, 256, 662, 1336
NsiI ATGCAT 1 cut(s) 83
NspI RCATGY 1 cut(s) 1369
PaeR7I CTCGAG 1 cut(s) 1284
PagI TCATGA 2 cut(s) 375, 880
PctI GAATGC 1 cut(s) 1057
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 3 cut(s) 573, 1085, 1379
PkrI GCNGC 4 cut(s) 616, 1187, 1237, 1323
PleI GAGTC 2 cut(s) 275, 1276
PpsI GAGTC 2 cut(s) 275, 1276
PpuMI RGGWCCY 1 cut(s) 1335
Psp124BI GAGCTC 1 cut(s) 1256
Psp5II RGGWCCY 1 cut(s) 1335
Psp6I CCWGG 1 cut(s) 663
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 5 cut(s) 99, 148, 256, 662, 1336
PspPI GGNCC 2 cut(s) 254, 1335
PspPPI RGGWCCY 1 cut(s) 1335
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PstI CTGCAG 1 cut(s) 1323
PsuI RGATCY 2 cut(s) 97, 648
PvuII CAGCTG 1 cut(s) 1324
RsaI GTAC 3 cut(s) 370, 718, 975
RsaNI GTAC 3 cut(s) 369, 717, 974
SacI GAGCTC 1 cut(s) 1256
SaqAI TTAA 3 cut(s) 330, 564, 1242
SatI GCNGC 4 cut(s) 615, 1186, 1236, 1322
Sau3AI GATC 7 cut(s) 97, 120, 185, 378, 648, 877, 1426
Sau96I GGNCC 2 cut(s) 254, 1335
ScaI AGTACT 1 cut(s) 718
SchI GAGTC 2 cut(s) 275, 1276
ScrFI CCNGG 2 cut(s) 665, 865
SduI GDGCHC 1 cut(s) 1256
SfaNI GCATC 5 cut(s) 308, 342, 677, 1138, 1279
SfcI CTRYAG 1 cut(s) 1319
Sfr274I CTCGAG 1 cut(s) 1284
SinI GGWCC 1 cut(s) 1335
SlaI CTCGAG 1 cut(s) 1284
SmlI CTYRAG 1 cut(s) 1284
SmoI CTYRAG 1 cut(s) 1284
Sse9I AATT 9 cut(s) 27, 45, 157, 228, 438, 452, 577, 636, 944
SspI AATATT 4 cut(s) 15, 500, 759, 795
SspMI CTAG 3 cut(s) 176, 692, 1034
SstI GAGCTC 1 cut(s) 1256
StyD4I CCNGG 2 cut(s) 663, 863
StyI CCWWGG 2 cut(s) 142, 356
TaaI ACNGT 2 cut(s) 373, 1202
TaiI ACGT 1 cut(s) 270
TaqI TCGA 8 cut(s) 126, 279, 436, 895, 1088, 1280, 1285, 1300
TasI AATT 9 cut(s) 27, 45, 157, 228, 438, 452, 577, 636, 944
TatI WGTACW 1 cut(s) 716
TfiI GAWTC 3 cut(s) 573, 1085, 1379
Tru1I TTAA 3 cut(s) 330, 564, 1242
Tru9I TTAA 3 cut(s) 330, 564, 1242
TseI GCWGC 4 cut(s) 614, 1185, 1235, 1321
TspDTI ATGAA 5 cut(s) 57, 196, 740, 836, 1087
VpaK11BI GGWCC 1 cut(s) 1335
XapI RAATTY 4 cut(s) 45, 157, 452, 944
XbaI TCTAGA 1 cut(s) 1033
XceI RCATGY 1 cut(s) 1369
XhoI CTCGAG 1 cut(s) 1284
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 3 cut(s) 176, 692, 1034
ZrmI AGTACT 1 cut(s) 718
Zsp2I ATGCAT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.