Rroxscaffold_1G00058320

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000491
Physical Location & Seq
Reverse (-)
80152629 .. 80162050
9422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058320.1

Sequence Viewer

Length: 2637 bp
ATGGAGAGTCCAGAAGTTCCAGATGAAGGTCCATGTTCTCCGGCTTCAACTAGGAATACAAGGTCAACAGTTAGAAGTCGAATTTGGGAAAGCTTGTTAGCAATTGTAACTCTGATTTGGAGTTGTACAGGATCAGCAGCATCTGGAATATGGGAAACAGGTTCCACAGTCGCAATCATGATTGCGAAAGCAGTTGCATATTTAATTTGGAAAGCAGGCACCTTCGTCGCAGTAAAATGGGAACGGGCATTTGTGCTATCATGTATTGCAGTCTCATTGGATCCTTTATTCCTTTACATTCCAATCGTCGATGAGACTAACAAGTGCCTTAACATGGACAAGACGTTGAGAACTACAGCTCTCGTCCTCCGTACACTCACGGATTTCCTTTTATTAACCCATATCGTAGCTGAAATTTGTCAATGTATCCAGGACCAGAAGGACAAAGAATACTATTTGTCAACCGACAAGTATTTGTCGACCGACTACCCCAAGTATTTGTCCGAAGACTCGAATCCCCATTCCGAATCCGACAAGGAGTTTGATCGCGACCCGGAGGCGTTATGCATATATCCAGTGAAGTCATTCGTTGATACTAAACTGCCGTGGTTAACTCCCTCTGTCATCATCAAATTACTTGCTATTATTCCCGTTCCACAGGTGGCAATATTAAGGGGCTTTTTCAGAATGACAGGCTCTGATTTCTATGTTATAAGAAAACTTCTCAACATTGCACTCGTCCTCCAATATTTGCCAAGAGTCTGTCAAATCTACTTAACCAAGAGGCAATTTAGAATGGGAGGAAAATGGCCTCAACCTTTGTTCAATTTGTATCTATACATTCTTGCCGGTCATGTACTTGGCTCTTTGTGGTATTTTGTCGCTATTGAACGAGAGACATCGTGTTGGCATAAAGCTTATAAAAAGATTACAGGATGTGTAATTACTAGTACATATAATTGCGGTGGTAGTGGCAGCACAAGAAATATAACACTCCTAAATCAGTTATGCCCTATCAATTCTCCGAATTCTACGCTATTTGATTTTGGAATTTTTGTTGACGTCCTTCAATCTGGCAACACAGAATCAGACAAGTTTGCAACGAAACTCTTTTACTCTTTATGGTGGGGCCTAAAAAATCTAAGTAATTTTGGCACGAATCTCGAAACAAGCAATTACCTATGGGAGAATTGTTTTGCAATTCTTATTTGTGTTATTGGGTTGCTACTATTTCTATATCTTATTGGAAATGTGCAGTTATATATTCAATCGGCAACCCAAAACTCGTTGAAAAAAGAGGAATCAAGAACAGCAAAGATTAATGATACATACAATGATATTACAAAGTGGATGAAAAAAAGATTTCAGGATGTTGATGGTACGGGAATAAAAATCAAGCAAAGGAGGATAAAAATCAAGAGAGACATAAGAGAAGACAAGGTTGTGGAAAAGAACTTAATCCATGATGTGGATGTAAAATATTTTCTAAAACCTTCTCGTATTAGAAACTCTGTTTTGGAGCATGTGGGAGTGGATGCGTTAAAAAAGGTACCAATGCTTCAAGCTCTGGATGGCCCCAAGTTGATAAGCTTGAGCCAAAAAATGAAGCCGGTGGTTCGCATCCCCAATACGGCTACTAGTCACTTTGTTAAACCGGAAGACCCGCTAGATCAGATGCTCTTCATTATAGGAGGCGATATTCAAGTCAACAGTAAAAGACAGTTCGTGAGTTACTATGGAACAGAAATTCTAGAGTGGGTGTCATTTAACACGGGGAGATCTTATCGTGACCCTCTTCCTTGCTCGACCGAACTTGTCGAACCATATGGAGGAAAATTAGAAGCGCTTGCTCTCAACGCTTGGGAATTGTTACATTTTCTGGAGGACGATAAATTTGACATTAATAATCATCCGGAAGCGAAGAAGTTAGCAGATTCGTATCAAAAAAAGAAGTTAACAGACGCACGCGACAAAAATAATCATCATGAAGAGGATTCGCATATTACGGCTCCGGCTGACACATGGATATCTCCACTGCTTGGCTGGGTGAAACTCAATTGCTGTTATGTCCAGCATCCTAATACTAACAAGGCATTTTTTGGTTTTGTTTTGAGGAATGATAAACAAGATTTCATTGCGGCAGGAGGTGGCACTTATAAGTTTATTGATAGCTTTGAAGCTGGAGCTCTTAGCATACAGCGCTGTTTGAGGTCCTCTATGAAGTATTTGAAAACAAGTCAGATAGTTGTGGAGTCTGATGACAAGCTTCTCATCGATTTCCTCAAAGATTTGCCTTCACACTCAGATGACAAACGAGTTCGAGATATCGTTCGACCCACCCTTCAAAATATTGCCAATGATATTCAAAAGTTCAAATGTCACAAATTTGAGCATTGTAAGCGCCAGGCTAATGAAGCGGCGCTTCGCGTAGCAGAACATGCTCGTGTTTCTGGTTCTAAAGAGTGGGAAAAAGCTGAAGAAATACCAGGACTAGTTGATGCCTTGAAGAAAGATACTCCGCGTCCGGAGCAAAACCAAGATTTGCCTCAAGAGGTCAACGACAGTGGCGCGTCTACTTCAGCTGGTGCTGCTCATAGGGTGGAGGAAATCATTCAGGACAAGTCACAGGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

878

Amino Acids

99.79

Weight (kDa)

8.19

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 694 - 814 2.8e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 713, 921, 2157
AatII GACGTC 1 cut(s) 1065
Acc65I GGTACC 1 cut(s) 1549
AccB1I GGYRCC 2 cut(s) 218, 1549
AccB7I CCANNNNNTGG 2 cut(s) 1468, 2039
AccI GTMKAC 2 cut(s) 479, 2573
AccII CGCG 5 cut(s) 549, 1968, 2427, 2521, 2570
AccIII TCCGGA 2 cut(s) 1912, 2524
AciI CCGC 5 cut(s) 963, 1664, 2138, 2417, 2519
AclWI GGATC 3 cut(s) 139, 275, 288
AcsI RAATTY 7 cut(s) 81, 414, 1027, 1050, 1746, 1892, 2384
AcuI CTGAAG 2 cut(s) 2496, 2562
AcyI GRCGYC 1 cut(s) 1062
AfaI GTAC 6 cut(s) 127, 373, 858, 952, 1381, 1551
AfeI AGCGCT 2 cut(s) 1845, 2201
AfiI CCNNNNNNNGG 6 cut(s) 26, 334, 1468, 1630, 1829, 2039
AhlI ACTAGT 3 cut(s) 947, 1637, 2491
AjnI CCWGG 3 cut(s) 429, 2403, 2485
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
Alw21I GWGCWC 1 cut(s) 2188
Alw26I GTCTC 4 cut(s) 277, 308, 890, 1416
AlwI GGATC 3 cut(s) 139, 275, 288
AlwNI CAGNNNCTG 2 cut(s) 143, 698
Aor13HI TCCGGA 2 cut(s) 1912, 2524
Aor51HI AGCGCT 2 cut(s) 1845, 2201
AoxI GGCC 3 cut(s) 809, 1129, 1573
ApeKI GCWGC 3 cut(s) 137, 975, 2588
ApoI RAATTY 7 cut(s) 81, 414, 1027, 1050, 1746, 1892, 2384
ArsI GACNNNNNNTTYG 4 cut(s) 524, 556, 1877, 1909
AseI ATTAAT 2 cut(s) 1320, 1902
Asp700I GAANNNNTTC 2 cut(s) 584, 2610
Asp718I GGTACC 1 cut(s) 1549
AspLEI GCGC 5 cut(s) 1846, 2202, 2403, 2422, 2570
AspS9I GGNCC 5 cut(s) 29, 433, 1129, 1574, 2211
AsuC2I CCSGG 1 cut(s) 554
AsuHPI GGTGA 1 cut(s) 2059
AvaII GGWCC 3 cut(s) 29, 433, 2211
BamHI GGATCC 1 cut(s) 280
BanI GGYRCC 2 cut(s) 218, 1549
BanII GRGCYC 1 cut(s) 2188
BarI GAAGNNNNNNTAC 2 cut(s) 1542, 1574
BauI CACGAG 1 cut(s) 2442
BbsI GAAGAC 3 cut(s) 513, 1440, 1665
Bbv12I GWGCWC 1 cut(s) 2188
BbvI GCAGC 3 cut(s) 149, 987, 2575
BccI CCATC 2 cut(s) 1370, 1565
BceAI ACGGC 3 cut(s) 589, 1647, 2022
BcgI CGANNNNNNTGC 4 cut(s) 208, 242, 1144, 1178
BciT130I CCWGG 3 cut(s) 431, 2405, 2487
BciVI GTATCC 1 cut(s) 437
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 4 cut(s) 277, 308, 890, 1416
BcuI ACTAGT 3 cut(s) 947, 1637, 2491
BfaI CTAG 6 cut(s) 51, 948, 1638, 1667, 1751, 2492
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 4 cut(s) 1847, 2203, 2404, 2423
BfuI GTATCC 1 cut(s) 437
BglII AGATCT 1 cut(s) 1778
BisI GCNGC 5 cut(s) 138, 976, 2139, 2418, 2589
BlsI GCNGC 5 cut(s) 139, 977, 2140, 2419, 2590
Bme1390I CCNGG 4 cut(s) 431, 554, 2405, 2487
Bme18I GGWCC 3 cut(s) 29, 433, 2211
BmgT120I GGNCC 5 cut(s) 29, 433, 1129, 1574, 2211
BmiI GGNNCC 7 cut(s) 163, 220, 282, 1130, 1551, 1576, 2010
BmrFI CCNGG 4 cut(s) 431, 554, 2405, 2487
BmsI GCATC 6 cut(s) 149, 1525, 1629, 1665, 2083, 2488
BpiI GAAGAC 3 cut(s) 513, 1440, 1665
BpmI CTGGAG 2 cut(s) 1901, 2202
BpuEI CTTGAG 2 cut(s) 1612, 2532
BpuMI CCSGG 1 cut(s) 554
Bsa29I ATCGAT 1 cut(s) 2274
BsaBI GATNNNNATC 2 cut(s) 1412, 1938
BsaHI GRCGYC 1 cut(s) 1062
BsaJI CCNNGG 1 cut(s) 605
BsaWI WCCGGW 3 cut(s) 1654, 1912, 2524
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 334, 1468, 1630, 1829, 2039
Bse118I RCCGGY 2 cut(s) 848, 1609
Bse1I ACTGG 1 cut(s) 575
Bse3DI GCAATG 2 cut(s) 729, 2133
Bse8I GATNNNNATC 2 cut(s) 1412, 1938
BseAI TCCGGA 2 cut(s) 1912, 2524
BseBI CCWGG 3 cut(s) 431, 2405, 2487
BseCI ATCGAT 1 cut(s) 2274
BseDI CCNNGG 1 cut(s) 605
BseGI GGATG 9 cut(s) 941, 1356, 1375, 1477, 1540, 1576, 1620, 1909, 2074
BseJI GATNNNNATC 2 cut(s) 1412, 1938
BseLI CCNNNNNNNGG 6 cut(s) 26, 334, 1468, 1630, 1829, 2039
BseMI GCAATG 2 cut(s) 729, 2133
BseMII CTCAG 1 cut(s) 2316
BseNI ACTGG 1 cut(s) 575
BseXI GCAGC 3 cut(s) 149, 987, 2575
BseYI CCCAGC 1 cut(s) 2043
BsgI GTGCAG 1 cut(s) 1274
Bsh1236I CGCG 5 cut(s) 549, 1968, 2427, 2521, 2570
Bsh1285I CGRYCG 2 cut(s) 483, 1809
BshFI GGCC 3 cut(s) 811, 1131, 1575
BshNI GGYRCC 2 cut(s) 218, 1549
BshVI ATCGAT 1 cut(s) 2274
BsiEI CGRYCG 2 cut(s) 483, 1809
BsiHKAI GWGCWC 1 cut(s) 2188
BsiSI CCGG 8 cut(s) 41, 554, 849, 1610, 1655, 1913, 2012, 2525
BslI CCNNNNNNNGG 6 cut(s) 26, 334, 1468, 1630, 1829, 2039
BsmAI GTCTC 4 cut(s) 277, 308, 890, 1416
BsnI GGCC 3 cut(s) 811, 1131, 1575
Bsp1286I GDGCHC 1 cut(s) 2188
Bsp13I TCCGGA 2 cut(s) 1912, 2524
Bsp1407I TGTACA 1 cut(s) 125
Bsp143I GATC 5 cut(s) 131, 280, 544, 1669, 1778
Bsp68I TCGCGA 1 cut(s) 549
BspACI CCGC 5 cut(s) 963, 1664, 2138, 2417, 2519
BspANI GGCC 3 cut(s) 811, 1131, 1575
BspCNI CTCAG 1 cut(s) 2315
BspDI ATCGAT 1 cut(s) 2274
BspEI TCCGGA 2 cut(s) 1912, 2524
BspFNI CGCG 5 cut(s) 549, 1968, 2427, 2521, 2570
BspHI TCATGA 2 cut(s) 177, 1984
BspLI GGNNCC 7 cut(s) 163, 220, 282, 1130, 1551, 1576, 2010
BspPI GGATC 3 cut(s) 139, 275, 288
BspQI GCTCTTC 1 cut(s) 1685
BspT107I GGYRCC 2 cut(s) 218, 1549
BsrDI GCAATG 2 cut(s) 729, 2133
BsrFI RCCGGY 2 cut(s) 848, 1609
BsrGI TGTACA 1 cut(s) 125
BsrI ACTGG 1 cut(s) 575
BssAI RCCGGY 2 cut(s) 848, 1609
BssECI CCNNGG 1 cut(s) 605
BssMI GATC 5 cut(s) 131, 280, 544, 1669, 1778
BssNI GRCGYC 1 cut(s) 1062
BssSI CACGAG 1 cut(s) 2442
Bst2BI CACGAG 1 cut(s) 2442
Bst2UI CCWGG 3 cut(s) 431, 2405, 2487
Bst4CI ACNGT 5 cut(s) 70, 169, 1712, 1722, 2564
Bst6I CTCTTC 3 cut(s) 1685, 1800, 1983
BstACI GRCGYC 1 cut(s) 1062
BstAPI GCANNNNNTGC 1 cut(s) 2438
BstAUI TGTACA 1 cut(s) 125
BstC8I GCNNGC 3 cut(s) 217, 1848, 1966
BstDEI CTNAG 3 cut(s) 1142, 2189, 2302
BstDSI CCRYGG 1 cut(s) 605
BstF5I GGATG 9 cut(s) 941, 1356, 1375, 1477, 1540, 1576, 1620, 1909, 2074
BstFNI CGCG 5 cut(s) 549, 1968, 2427, 2521, 2570
BstH2I RGCGCY 4 cut(s) 1847, 2203, 2404, 2423
BstHHI GCGC 5 cut(s) 1846, 2202, 2403, 2422, 2570
BstKTI GATC 5 cut(s) 134, 283, 547, 1672, 1781
BstMAI GTCTC 4 cut(s) 277, 308, 890, 1416
BstMBI GATC 5 cut(s) 131, 280, 544, 1669, 1778
BstMCI CGRYCG 2 cut(s) 483, 1809
BstMWI GCNNNNNNNGC 7 cut(s) 1856, 2199, 2398, 2414, 2438, 2527, 2588
BstNI CCWGG 3 cut(s) 431, 2405, 2487
BstNSI RCATGY 2 cut(s) 1526, 2441
BstSCI CCNGG 4 cut(s) 429, 552, 2403, 2485
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 5 cut(s) 549, 1968, 2427, 2521, 2570
BstV1I GCAGC 3 cut(s) 149, 987, 2575
BstV2I GAAGAC 3 cut(s) 513, 1440, 1665
BstX2I RGATCY 2 cut(s) 280, 1778
BstYI RGATCY 2 cut(s) 280, 1778
Bsu15I ATCGAT 1 cut(s) 2274
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 3 cut(s) 811, 1131, 1575
BsuTUI ATCGAT 1 cut(s) 2274
BtgI CCRYGG 1 cut(s) 605
BtsCI GGATG 9 cut(s) 941, 1356, 1375, 1477, 1540, 1576, 1620, 1909, 2074
BtsI GCAGTG 1 cut(s) 2033
BtsIMutI CAGTG 3 cut(s) 582, 2033, 2569
BtuMI TCGCGA 1 cut(s) 549
Cac8I GCNNGC 3 cut(s) 217, 1848, 1966
CaiI CAGNNNCTG 2 cut(s) 143, 698
CciI TCATGA 2 cut(s) 177, 1984
CfoI GCGC 5 cut(s) 1846, 2202, 2403, 2422, 2570
Cfr10I RCCGGY 2 cut(s) 848, 1609
Cfr13I GGNCC 5 cut(s) 29, 433, 1129, 1574, 2211
ClaI ATCGAT 1 cut(s) 2274
CseI GACGC 3 cut(s) 1970, 2510, 2559
Csp6I GTAC 6 cut(s) 126, 372, 857, 951, 1380, 1550
CspCI CAANNNNNGTGG 2 cut(s) 2545, 2580
CviQI GTAC 6 cut(s) 126, 372, 857, 951, 1380, 1550
DdeI CTNAG 3 cut(s) 1142, 2189, 2302
DpnI GATC 5 cut(s) 133, 282, 546, 1671, 1780
DpnII GATC 5 cut(s) 131, 280, 544, 1669, 1778
Eam1104I CTCTTC 3 cut(s) 1685, 1800, 1983
EarI CTCTTC 3 cut(s) 1685, 1800, 1983
Ecl136II GAGCTC 1 cut(s) 2186
Eco24I GRGCYC 1 cut(s) 2188
Eco32I GATATC 2 cut(s) 2028, 2326
Eco47I GGWCC 3 cut(s) 29, 433, 2211
Eco47III AGCGCT 2 cut(s) 1845, 2201
Eco53kI GAGCTC 1 cut(s) 2186
Eco57I CTGAAG 2 cut(s) 2496, 2562
EcoICRI GAGCTC 1 cut(s) 2186
EcoO109I RGGNCCY 2 cut(s) 1129, 2211
EcoRI GAATTC 1 cut(s) 1027
EcoRII CCWGG 3 cut(s) 429, 2403, 2485
EcoRV GATATC 2 cut(s) 2028, 2326
EcoT22I ATGCAT 1 cut(s) 569
EcoT38I GRGCYC 1 cut(s) 2188
FalI AAGNNNNNCTT 2 cut(s) 2406, 2438
FauI CCCGC 1 cut(s) 1671
FauNDI CATATG 1 cut(s) 1825
FblI GTMKAC 2 cut(s) 479, 2573
Fnu4HI GCNGC 5 cut(s) 138, 976, 2139, 2418, 2589
FokI GGATG 9 cut(s) 948, 1363, 1382, 1484, 1547, 1583, 1607, 1896, 2061
FriOI GRGCYC 1 cut(s) 2188
Fsp4HI GCNGC 5 cut(s) 138, 976, 2139, 2418, 2589
FspBI CTAG 6 cut(s) 51, 948, 1638, 1667, 1751, 2492
GlaI GCGC 5 cut(s) 1845, 2201, 2402, 2421, 2569
GluI GCNGC 5 cut(s) 138, 976, 2139, 2418, 2589
GsaI CCCAGC 1 cut(s) 2047
GsuI CTGGAG 2 cut(s) 1901, 2202
HaeII RGCGCY 4 cut(s) 1847, 2203, 2404, 2423
HaeIII GGCC 3 cut(s) 811, 1131, 1575
HapII CCGG 8 cut(s) 41, 554, 849, 1610, 1655, 1913, 2012, 2525
HgaI GACGC 3 cut(s) 1970, 2510, 2559
HhaI GCGC 5 cut(s) 1846, 2202, 2403, 2422, 2570
Hin1I GRCGYC 1 cut(s) 1062
Hin6I GCGC 5 cut(s) 1844, 2200, 2401, 2420, 2568
HinP1I GCGC 5 cut(s) 1844, 2200, 2401, 2420, 2568
HincII GTYRAC 8 cut(s) 66, 462, 480, 612, 1060, 1708, 1956, 2557
HindII GTYRAC 8 cut(s) 66, 462, 480, 612, 1060, 1708, 1956, 2557
HindIII AAGCTT 4 cut(s) 91, 915, 1588, 2264
HpaI GTTAAC 2 cut(s) 612, 1956
HpaII CCGG 8 cut(s) 41, 554, 849, 1610, 1655, 1913, 2012, 2525
HphI GGTGA 1 cut(s) 2059
Hpy99I CGWCG 2 cut(s) 230, 311
HpyAV CCTTC 7 cut(s) 20, 232, 433, 1076, 1503, 2304, 2351
HpyCH4III ACNGT 5 cut(s) 70, 169, 1712, 1722, 2564
HpyCH4IV ACGT 2 cut(s) 344, 1062
HpyCH4V TGCA 7 cut(s) 197, 269, 567, 734, 1100, 1199, 1255
HpyF10VI GCNNNNNNNGC 7 cut(s) 1856, 2199, 2398, 2414, 2438, 2527, 2588
HpyF3I CTNAG 3 cut(s) 1142, 2189, 2302
HpySE526I ACGT 2 cut(s) 344, 1062
Hsp92I GRCGYC 1 cut(s) 1062
HspAI GCGC 5 cut(s) 1844, 2200, 2401, 2420, 2568
Kpn2I TCCGGA 2 cut(s) 1912, 2524
KpnI GGTACC 1 cut(s) 1553
KspAI GTTAAC 2 cut(s) 612, 1956
Kzo9I GATC 5 cut(s) 131, 280, 544, 1669, 1778
LguI GCTCTTC 1 cut(s) 1685
LmnI GCTCC 4 cut(s) 1519, 2014, 2183, 2527
Lsp1109I GCAGC 3 cut(s) 149, 987, 2575
LweI GCATC 6 cut(s) 149, 1525, 1629, 1665, 2083, 2488
MaeI CTAG 6 cut(s) 51, 948, 1638, 1667, 1751, 2492
MaeII ACGT 2 cut(s) 344, 1062
MaeIII GTNAC 7 cut(s) 106, 1640, 1730, 1787, 1869, 2378, 2622
MalI GATC 5 cut(s) 133, 282, 546, 1671, 1780
MboI GATC 5 cut(s) 131, 280, 544, 1669, 1778
MboII GAAGA 9 cut(s) 518, 1445, 1670, 1672, 1787, 1933, 2000, 2489, 2518
MfeI CAATTG 2 cut(s) 102, 2056
MflI RGATCY 2 cut(s) 280, 1778
MhlI GDGCHC 1 cut(s) 2188
MlyI GAGTC 4 cut(s) 16, 503, 768, 2261
MmeI TCCRAC 1 cut(s) 555
Mph1103I ATGCAT 1 cut(s) 569
MroI TCCGGA 2 cut(s) 1912, 2524
MroXI GAANNNNTTC 2 cut(s) 584, 2610
MslI CAYNNNNRTG 2 cut(s) 2304, 2442
MspA1I CMGCKG 1 cut(s) 2582
MspI CCGG 8 cut(s) 41, 554, 849, 1610, 1655, 1913, 2012, 2525
MspR9I CCNGG 4 cut(s) 431, 554, 2405, 2487
MunI CAATTG 2 cut(s) 102, 2056
MvaI CCWGG 3 cut(s) 431, 2405, 2487
MvnI CGCG 5 cut(s) 549, 1968, 2427, 2521, 2570
MwoI GCNNNNNNNGC 7 cut(s) 1856, 2199, 2398, 2414, 2438, 2527, 2588
NciI CCSGG 1 cut(s) 554
NdeI CATATG 1 cut(s) 1825
NdeII GATC 5 cut(s) 131, 280, 544, 1669, 1778
NlaIV GGNNCC 7 cut(s) 163, 220, 282, 1130, 1551, 1576, 2010
NmuCI GTSAC 4 cut(s) 1640, 1787, 2378, 2622
NruI TCGCGA 1 cut(s) 549
NsiI ATGCAT 1 cut(s) 569
NspI RCATGY 2 cut(s) 1526, 2441
PagI TCATGA 2 cut(s) 177, 1984
PciSI GCTCTTC 1 cut(s) 1685
PdmI GAANNNNTTC 2 cut(s) 584, 2610
PfeI GAWTC 7 cut(s) 514, 527, 1085, 1159, 1301, 1934, 1994
PflMI CCANNNNNTGG 2 cut(s) 1468, 2039
PfoI TCCNGGA 1 cut(s) 429
PkrI GCNGC 5 cut(s) 139, 977, 2140, 2419, 2590
PleI GAGTC 4 cut(s) 15, 503, 767, 2260
PpsI GAGTC 4 cut(s) 15, 503, 767, 2260
PpuMI RGGWCCY 1 cut(s) 2211
PshBI ATTAAT 2 cut(s) 1320, 1902
PsiI TTATAA 3 cut(s) 713, 921, 2157
Psp124BI GAGCTC 1 cut(s) 2188
Psp5II RGGWCCY 1 cut(s) 2211
Psp6I CCWGG 3 cut(s) 429, 2403, 2485
PspFI CCCAGC 1 cut(s) 2043
PspGI CCWGG 3 cut(s) 429, 2403, 2485
PspN4I GGNNCC 7 cut(s) 163, 220, 282, 1130, 1551, 1576, 2010
PspPI GGNCC 5 cut(s) 29, 433, 1129, 1574, 2211
PspPPI RGGWCCY 1 cut(s) 2211
PstNI CAGNNNCTG 2 cut(s) 143, 698
PsuI RGATCY 2 cut(s) 280, 1778
PvuII CAGCTG 1 cut(s) 2582
RruI TCGCGA 1 cut(s) 549
RsaI GTAC 6 cut(s) 127, 373, 858, 952, 1381, 1551
RsaNI GTAC 6 cut(s) 126, 372, 857, 951, 1380, 1550
RseI CAYNNNNRTG 2 cut(s) 2304, 2442
SacI GAGCTC 1 cut(s) 2188
SalI GTCGAC 1 cut(s) 478
SapI GCTCTTC 1 cut(s) 1685
SatI GCNGC 5 cut(s) 138, 976, 2139, 2418, 2589
Sau3AI GATC 5 cut(s) 131, 280, 544, 1669, 1778
Sau96I GGNCC 5 cut(s) 29, 433, 1129, 1574, 2211
SchI GAGTC 4 cut(s) 16, 503, 768, 2261
ScrFI CCNGG 4 cut(s) 431, 554, 2405, 2487
SduI GDGCHC 1 cut(s) 2188
SfaNI GCATC 6 cut(s) 149, 1525, 1629, 1665, 2083, 2488
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 3 cut(s) 29, 433, 2211
SmiMI CAYNNNNRTG 2 cut(s) 2304, 2442
SmlI CTYRAG 2 cut(s) 1591, 2547
SmoI CTYRAG 2 cut(s) 1591, 2547
SpeI ACTAGT 3 cut(s) 947, 1637, 2491
SsiI CCGC 5 cut(s) 963, 1664, 2138, 2417, 2519
SspI AATATT 4 cut(s) 669, 749, 1481, 2350
SspMI CTAG 6 cut(s) 51, 948, 1638, 1667, 1751, 2492
SstI GAGCTC 1 cut(s) 2188
StyD4I CCNGG 4 cut(s) 429, 552, 2403, 2485
TaaI ACNGT 5 cut(s) 70, 169, 1712, 1722, 2564
TaiI ACGT 2 cut(s) 347, 1065
TaqII GACCGA 2 cut(s) 497, 1823
TatI WGTACW 3 cut(s) 125, 856, 950
TauI GCSGC 2 cut(s) 2141, 2420
TfiI GAWTC 7 cut(s) 514, 527, 1085, 1159, 1301, 1934, 1994
TscAI CASTG 3 cut(s) 582, 2040, 2569
TseFI GTSAC 4 cut(s) 1640, 1787, 2378, 2622
TseI GCWGC 3 cut(s) 137, 975, 2588
Tsp45I GTSAC 4 cut(s) 1640, 1787, 2378, 2622
TspDTI ATGAA 8 cut(s) 39, 1367, 1619, 1672, 2001, 2122, 2234, 2427
TspGWI ACGGA 2 cut(s) 359, 395
TspRI CASTG 3 cut(s) 582, 2040, 2569
Van91I CCANNNNNTGG 2 cut(s) 1468, 2039
VpaK11BI GGWCC 3 cut(s) 29, 433, 2211
VspI ATTAAT 2 cut(s) 1320, 1902
XapI RAATTY 7 cut(s) 81, 414, 1027, 1050, 1746, 1892, 2384
XbaI TCTAGA 1 cut(s) 1750
XceI RCATGY 2 cut(s) 1526, 2441
XcmI CCANNNNNNNNNTGG 1 cut(s) 2040
XmiI GTMKAC 2 cut(s) 479, 2573
XmnI GAANNNNTTC 2 cut(s) 584, 2610
XspI CTAG 6 cut(s) 51, 948, 1638, 1667, 1751, 2492
ZraI GACGTC 1 cut(s) 1063
Zsp2I ATGCAT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.