RLG00000029052

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
32028678 .. 32029574
897 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029052

Sequence Viewer

Length: 699 bp
ATGCTTACATGGGAAGAAGCGCGAGCAATTTTATCTTTAATTTGGGCGATATCCATATGCCTCTGCGAGTGGGTTCCCAATGTTCTAATTTGGATGGTTAAGGCTCCAATATTTGTTCCACTCGTTGCAATTCGGTGGGCGTGCAAGGCTTTCCCTGACATCCTTCGGTGGGCATGGAAGGCTTTTCTTGACATCCCTTCAGCAAAGTGGGAACATGTATTTGTAATATCTTGTATTGCGGTCTTACTGGATCCTCTGTTCTTTTACATTCCAATCATCGACGAGACAAATAAATGTCTTTCAATGGACAAAAAGTTGAGAACTACAGCTCTCGTCTTCCGATCGCTTACGGATGCCCCTTTAGTACTCCATATTAAAGATCAAATTTGTGATCGGGTCGACTCTGACTACCCCAACTGGTCCGAGTCTGACTCCAACTCCGACTCCGACACCTACTTCGACTCCGATTCTGAGGCAACATCGTCTTCATTGAAGAAGAGGATAGCAAAGAGGATCCCTATTATAGTTAACTGCCTTGCCATTCTTCCCATACCACAGGCTCATCGTTCTCTGAAGTTTCTATTAGAAGAACAACGCTCAACGTTTCTCTTGCCCTCCAGTATCTGCCAAGAGTTTGTCAAATCTACCTATCTAGTAAGAAGTTTAGAACAAGCGGAAGATGGATTAAACCTTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.64

Weight (kDa)

5.68

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 399
AccII CGCG 1 cut(s) 22
AciI CCGC 2 cut(s) 239, 674
AclI AACGTT 1 cut(s) 602
AclWI GGATC 4 cut(s) 245, 258, 508, 521
AcsI RAATTY 1 cut(s) 384
AcuI CTGAAG 2 cut(s) 183, 593
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 2 cut(s) 303, 493
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 4 cut(s) 245, 258, 508, 521
AlwNI CAGNNNCTG 1 cut(s) 624
ApoI RAATTY 1 cut(s) 384
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 420
AvaII GGWCC 1 cut(s) 420
BamHI GGATCC 2 cut(s) 250, 513
BbsI GAAGAC 2 cut(s) 328, 477
BccI CCATC 2 cut(s) 88, 674
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 653
BfmI CTRYAG 1 cut(s) 324
BmcAI AGTACT 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 4 cut(s) 75, 105, 252, 515
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 2 cut(s) 328, 477
BplI GAGNNNNNCTC 2 cut(s) 416, 448
BpmI CTGGAG 1 cut(s) 601
BsaXI ACNNNNNCTCC 6 cut(s) 422, 428, 446, 452, 458, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 3 cut(s) 252, 422, 618
BseGI GGATG 4 cut(s) 99, 159, 192, 358
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 3 cut(s) 252, 422, 618
Bsh1236I CGCG 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 278
Bsp143I GATC 5 cut(s) 250, 341, 379, 391, 513
BspACI CCGC 2 cut(s) 239, 674
BspCNI CTCAG 1 cut(s) 463
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 4 cut(s) 75, 105, 252, 515
BspPI GGATC 4 cut(s) 245, 258, 508, 521
BsrI ACTGG 3 cut(s) 252, 422, 618
BssMI GATC 5 cut(s) 250, 341, 379, 391, 513
Bst6I CTCTTC 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 24, 142
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 4 cut(s) 99, 159, 192, 358
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 5 cut(s) 253, 344, 382, 394, 516
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 5 cut(s) 250, 341, 379, 391, 513
BstMCI CGRYCG 1 cut(s) 344
BstMWI GCNNNNNNNGC 2 cut(s) 146, 179
BstNSI RCATGY 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 1 cut(s) 22
BstV2I GAAGAC 2 cut(s) 328, 477
BstX2I RGATCY 2 cut(s) 250, 513
BstYI RGATCY 2 cut(s) 250, 513
BtsCI GGATG 4 cut(s) 99, 159, 192, 358
Cac8I GCNNGC 2 cut(s) 24, 142
CaiI CAGNNNCTG 1 cut(s) 624
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 365
CviAII CATG 3 cut(s) 9, 174, 215
CviJI RGCY 5 cut(s) 104, 149, 182, 329, 560
CviKI_1 RGCY 5 cut(s) 104, 149, 182, 329, 560
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 1 cut(s) 471
DpnI GATC 5 cut(s) 252, 343, 381, 393, 515
DpnII GATC 5 cut(s) 250, 341, 379, 391, 513
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco32I GATATC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 183, 593
EcoRV GATATC 1 cut(s) 51
FaeI CATG 3 cut(s) 12, 177, 218
FaiI YATR 8 cut(s) 10, 56, 58, 175, 216, 372, 524, 551
FatI CATG 3 cut(s) 8, 173, 214
FauNDI CATATG 1 cut(s) 56
FblI GTMKAC 1 cut(s) 399
FokI GGATG 4 cut(s) 106, 146, 179, 365
FspBI CTAG 1 cut(s) 653
GlaI GCGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 601
HhaI GCGC 1 cut(s) 22
Hin1II CATG 3 cut(s) 12, 177, 218
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 2 cut(s) 400, 529
HindII GTYRAC 2 cut(s) 400, 529
HinfI GANTC 6 cut(s) 401, 425, 431, 443, 461, 467
HpaI GTTAAC 1 cut(s) 529
Hpy166II GTNNAC 2 cut(s) 400, 529
Hpy188I TCNGA 9 cut(s) 341, 406, 424, 430, 442, 448, 466, 472, 573
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 400, 529
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 172, 173, 207
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 2 cut(s) 128, 144
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 179
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 1 cut(s) 602
Hsp92II CATG 3 cut(s) 12, 177, 218
HspAI GCGC 1 cut(s) 20
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 5 cut(s) 250, 341, 379, 391, 513
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 168, 233, 403, 542, 631
LweI GCATC 1 cut(s) 343
MaeI CTAG 1 cut(s) 653
MaeII ACGT 1 cut(s) 602
MalI GATC 5 cut(s) 252, 343, 381, 393, 515
MboI GATC 5 cut(s) 250, 341, 379, 391, 513
MboII GAAGA 8 cut(s) 26, 328, 477, 505, 508, 536, 599, 689
MflI RGATCY 2 cut(s) 250, 513
MluCI AATT 5 cut(s) 27, 39, 87, 129, 384
MlyI GAGTC 5 cut(s) 395, 425, 434, 437, 455
MmeI TCCRAC 3 cut(s) 459, 465, 471
MnlI CCTC 6 cut(s) 71, 264, 466, 492, 504, 625
MseI TTAA 5 cut(s) 38, 99, 375, 528, 686
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 146, 179
NdeI CATATG 1 cut(s) 56
NdeII GATC 5 cut(s) 250, 341, 379, 391, 513
NlaIII CATG 3 cut(s) 12, 177, 218
NlaIV GGNNCC 4 cut(s) 75, 105, 252, 515
NspI RCATGY 1 cut(s) 218
PciI ACATGT 1 cut(s) 214
PfeI GAWTC 1 cut(s) 467
Ple19I CGATCG 1 cut(s) 344
PleI GAGTC 5 cut(s) 395, 425, 433, 437, 455
PpsI GAGTC 5 cut(s) 395, 425, 433, 437, 455
PscI ACATGT 1 cut(s) 214
Psp1406I AACGTT 1 cut(s) 602
PspN4I GGNNCC 4 cut(s) 75, 105, 252, 515
PspPI GGNCC 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 624
PsuI RGATCY 2 cut(s) 250, 513
PvuI CGATCG 1 cut(s) 344
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SalI GTCGAC 1 cut(s) 398
SaqAI TTAA 5 cut(s) 38, 99, 375, 528, 686
Sau3AI GATC 5 cut(s) 250, 341, 379, 391, 513
Sau96I GGNCC 1 cut(s) 420
ScaI AGTACT 1 cut(s) 366
SchI GAGTC 5 cut(s) 395, 425, 434, 437, 455
SetI ASST 5 cut(s) 331, 455, 605, 650, 693
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 1 cut(s) 420
Sse9I AATT 5 cut(s) 27, 39, 87, 129, 384
SsiI CCGC 2 cut(s) 239, 674
SspI AATATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 653
TaiI ACGT 1 cut(s) 605
TaqI TCGA 3 cut(s) 279, 399, 459
TasI AATT 5 cut(s) 27, 39, 87, 129, 384
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 5 cut(s) 38, 99, 375, 528, 686
Tru9I TTAA 5 cut(s) 38, 99, 375, 528, 686
TspDTI ATGAA 1 cut(s) 477
TspGWI ACGGA 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 1 cut(s) 384
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 399
XspI CTAG 1 cut(s) 653
ZrmI AGTACT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.