Rh4BG200000

voltage-gated potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000491
Physical Location & Seq
Reverse (-)
34337449 .. 34337730
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG200000.1

Sequence Viewer

Length: 282 bp
ATGATAAGCCACCCTATTCCTCTAGAGAAAGGTGATTATTTTGGAGAAGAAATCGAAACTTGGGCATCGTTAAACTACATGAAGTCTTATTATGACCCTCTTCCTACTTCAACCGGACGTGTAAGATGTCTAAAAAAGGTAGAAGCCTTTGCACTCAAGGCCTTCGACTTGTTAACATTTGCCCAGCAAAACTTGAACCAGTCCAACATTAATCCTGCGCAGTTGGAAAAGTTGGCACTTGACCACCACAACACTGTTCATCCGACTCTATACATGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
6PF2K Ank_2 Ank_4 Ank_5 F-box-like His_Phos_1 LRR_6 PAS_9 Pkinase Pkinase_Tyr RGS cNMP_binding

Protein Analysis

93

Amino Acids

10.67

Weight (kDa)

6.02

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 2 cut(s) 111, 196
AjiI CACGTC 1 cut(s) 119
AoxI GGCC 1 cut(s) 159
AseI ATTAAT 1 cut(s) 210
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 44
BfaI CTAG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 119
BmsI GCATC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 183
BshFI GGCC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 161
BspANI GGCC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 105
BstF5I GGATG 1 cut(s) 259
BstHHI GCGC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 161
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 252
CfoI GCGC 1 cut(s) 220
CviAII CATG 2 cut(s) 79, 274
CviJI RGCY 3 cut(s) 9, 146, 161
CviKI_1 RGCY 3 cut(s) 9, 146, 161
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco147I AGGCCT 1 cut(s) 161
FaeI CATG 2 cut(s) 82, 277
FaiI YATR 5 cut(s) 80, 93, 271, 275, 280
FatI CATG 2 cut(s) 78, 273
FokI GGATG 1 cut(s) 246
FspBI CTAG 1 cut(s) 23
FspI TGCGCA 1 cut(s) 219
GlaI GCGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 82, 277
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 1 cut(s) 265
HpaI GTTAAC 1 cut(s) 174
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 2 cut(s) 82, 277
HspAI GCGC 1 cut(s) 218
KspAI GTTAAC 1 cut(s) 174
LpnPI CCDG 4 cut(s) 127, 197, 212, 228
LweI GCATC 1 cut(s) 74
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 118
MboII GAAGA 2 cut(s) 59, 92
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 2 cut(s) 204, 228
MnlI CCTC 2 cut(s) 30, 108
MseI TTAA 3 cut(s) 71, 173, 210
MspI CCGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 82, 277
NsbI TGCGCA 1 cut(s) 219
PceI AGGCCT 1 cut(s) 161
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 71, 173, 210
SchI GAGTC 1 cut(s) 259
SetI ASST 3 cut(s) 34, 121, 141
SfaNI GCATC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SseBI AGGCCT 1 cut(s) 161
SspMI CTAG 1 cut(s) 23
StuI AGGCCT 1 cut(s) 161
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 54, 165
Tru1I TTAA 3 cut(s) 71, 173, 210
Tru9I TTAA 3 cut(s) 71, 173, 210
TscAI CASTG 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 95, 248
TspRI CASTG 1 cut(s) 259
VspI ATTAAT 1 cut(s) 210
XbaI TCTAGA 1 cut(s) 22
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.