Rroxscaffold_2G00093270

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000491
Physical Location & Seq
Reverse (-)
14672544 .. 14687111
14568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093270.1

Sequence Viewer

Length: 1047 bp
ATGTCTCCTTATGAATGCGGTGATAGTACAAAAAACATATCACTTTTAAATGAATTGTGCCCTATAAATTCAATAAATACTACCGTATTTGATTTTGGAATATACCTTGATATCCTTCAATCTGGTAACACGAGATCAATAAATTTTCCAAGGAAGTTCTTTTACTCTCTCTGGTGGGGCATCAAAAATTTAAGTAGTTTTGGCACAATTCTCGAAACTAGTAGTCACGTATTGGAGAACTGTTTTGCAATTCTTGTTGGTCTGATTGGCTTGCTTCTATTTTTGTATCTCATTGGAAATGTGCAGACATATATACAGTTGGCAACTACAAAATCAGTGCAGATAGAGAAAGCTGAGGAATTAAGACGAACAAGAATTAATATGAAGTATCGAGAAATGAAAATGTGGATGTCAAGTAATGGTCTCCCCGAGGATTTAAAGAGAACAACCAGGAAATGTATTAAACAAGCTAACCTAGTGGAGAAACACATAGATGCTACAGTGGATTTGGAATTTCTAAACAATGTTCTTCCACATTCTGTTTGGAGACCTATGGTGGATTGGCTAAAAGTGAACGCGCTAAAGAAAGTACCCATCTTTGAGAGTGTCAGTGAAAGTACGTTAAAACATGTCTGCGGATACTTGTATTCAGTTACCTACACCGAGAATAGCTACATTGTTGGAGCGGGAGAAGAGTGTGATTTGGTTGTCTTCATTTTAGACGGCGTAATTGAATTGACCGACACAACGTCTAACGGTGCTGAAAAAACGGGTTCATCATCAACGATTATGACCAAGCCTCTTGAGAAAGGTCAGTACTATGGAGAAGAACTGTTGAATTGGGCATCATTGAACTGTCAGCTCCCGCATAGGGAATCCCTACCTCGTCCTATTTCGACCCGAGATGTCAAATGTCGTACCAAAGTCGACGCCTTTTGTATCGGTGCCTACGACTCATTACAGTTACTACGACGTGTCAGCCGCCACTACAAGTGGAGGCAGAATAAGTGGGTGAAGCGGACACTTATCCATGACAACGTACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

39.93

Weight (kDa)

8.61

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 944
AccBSI CCGCTC 1 cut(s) 686
AccI GTMKAC 1 cut(s) 927
AccII CGCG 1 cut(s) 578
AciI CCGC 6 cut(s) 18, 636, 686, 866, 982, 1018
AcsI RAATTY 4 cut(s) 67, 142, 187, 512
AcyI GRCGYC 1 cut(s) 930
AfaI GTAC 6 cut(s) 28, 591, 619, 818, 919, 1041
AfiI CCNNNNNNNGG 1 cut(s) 871
AflIII ACRYGT 2 cut(s) 628, 973
AgsI TTSAA 5 cut(s) 72, 119, 734, 838, 853
AhdI GACNNNNNGTC 1 cut(s) 748
AhlI ACTAGT 1 cut(s) 218
AjiI CACGTC 1 cut(s) 974
AjnI CCWGG 1 cut(s) 449
AluBI AGCT 4 cut(s) 353, 470, 672, 862
AluI AGCT 4 cut(s) 353, 470, 672, 862
Alw26I GTCTC 3 cut(s) 9, 428, 541
Ama87I CYCGRG 2 cut(s) 428, 900
ApoI RAATTY 4 cut(s) 67, 142, 187, 512
AseI ATTAAT 1 cut(s) 378
AspLEI GCGC 1 cut(s) 580
AsuHPI GGTGA 2 cut(s) 32, 1024
AvaI CYCGRG 2 cut(s) 428, 900
BaeGI GKGCMC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 944
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BauI CACGAG 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 703
BbvCI CCTCAGC 1 cut(s) 354
BccI CCATC 1 cut(s) 602
BceAI ACGGC 1 cut(s) 739
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 1 cut(s) 451
BciVI GTATCC 1 cut(s) 632
BcoDI GTCTC 3 cut(s) 9, 428, 541
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 2 cut(s) 219, 476
BfmI CTRYAG 1 cut(s) 498
BfuI GTATCC 1 cut(s) 632
BisI GCNGC 1 cut(s) 982
BlsI GCNGC 1 cut(s) 983
BmcAI AGTACT 1 cut(s) 818
Bme1390I CCNGG 1 cut(s) 451
BmeRI GACNNNNNGTC 1 cut(s) 748
BmeT110I CYCGRG 2 cut(s) 428, 900
BmgBI CACGTC 1 cut(s) 974
BmiI GGNNCC 1 cut(s) 946
BmrFI CCNGG 1 cut(s) 451
BmsI GCATC 3 cut(s) 189, 484, 854
BpiI GAAGAC 1 cut(s) 703
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 824
BsaAI YACGTR 1 cut(s) 229
BsaHI GRCGYC 1 cut(s) 930
BsaI GGTCTC 2 cut(s) 428, 541
BsaJI CCNNGG 2 cut(s) 149, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 871
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 2 cut(s) 149, 429
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 871
BseMII CTCAG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 62
BsgI GTGCAG 2 cut(s) 323, 359
Bsh1236I CGCG 1 cut(s) 578
BshNI GGYRCC 1 cut(s) 944
BsiHKCI CYCGRG 2 cut(s) 428, 900
BslI CCNNNNNNNGG 1 cut(s) 871
BsmAI GTCTC 3 cut(s) 9, 428, 541
BsmI GAATGC 1 cut(s) 20
Bso31I GGTCTC 2 cut(s) 428, 541
BsoBI CYCGRG 2 cut(s) 428, 900
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 134
BspACI CCGC 6 cut(s) 18, 636, 686, 866, 982, 1018
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 1 cut(s) 578
BspLI GGNNCC 1 cut(s) 946
BspT107I GGYRCC 1 cut(s) 944
BspTNI GGTCTC 2 cut(s) 428, 541
BsrBI CCGCTC 1 cut(s) 686
BssECI CCNNGG 2 cut(s) 149, 429
BssMI GATC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 930
BssSI CACGAG 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 8 cut(s) 85, 242, 318, 502, 758, 834, 857, 963
Bst6I CTCTTC 1 cut(s) 687
BstACI GRCGYC 1 cut(s) 930
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 578
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 3 cut(s) 9, 428, 541
BstMBI GATC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 451
BstNSI RCATGY 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 449
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 62
BstUI CGCG 1 cut(s) 578
BstV2I GAAGAC 1 cut(s) 703
BsuI GTATCC 1 cut(s) 632
BtrI CACGTC 1 cut(s) 974
BtsCI GGATG 1 cut(s) 414
BtsIMutI CAGTG 4 cut(s) 342, 507, 616, 1042
Cac8I GCNNGC 1 cut(s) 272
CfoI GCGC 1 cut(s) 580
CseI GACGC 1 cut(s) 938
Csp6I GTAC 6 cut(s) 27, 590, 618, 817, 918, 1040
CviAII CATG 2 cut(s) 629, 1031
CviJI RGCY 8 cut(s) 270, 353, 470, 565, 672, 799, 862, 981
CviKI_1 RGCY 8 cut(s) 270, 353, 470, 565, 672, 799, 862, 981
CviQI GTAC 6 cut(s) 27, 590, 618, 817, 918, 1040
DdeI CTNAG 1 cut(s) 354
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
DraI TTTAAA 2 cut(s) 48, 438
DriI GACNNNNNGTC 1 cut(s) 748
Eam1104I CTCTTC 1 cut(s) 687
Eam1105I GACNNNNNGTC 1 cut(s) 748
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 149
Eco31I GGTCTC 2 cut(s) 428, 541
Eco32I GATATC 1 cut(s) 112
Eco88I CYCGRG 2 cut(s) 428, 900
EcoRII CCWGG 1 cut(s) 449
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 632, 1034
FatI CATG 2 cut(s) 628, 1030
FauI CCCGC 2 cut(s) 679, 873
FblI GTMKAC 1 cut(s) 927
Fnu4HI GCNGC 1 cut(s) 982
FokI GGATG 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 982
FspBI CTAG 2 cut(s) 219, 476
GlaI GCGC 1 cut(s) 579
GluI GCNGC 1 cut(s) 982
HgaI GACGC 1 cut(s) 938
HhaI GCGC 1 cut(s) 580
Hin1I GRCGYC 1 cut(s) 930
Hin1II CATG 2 cut(s) 632, 1034
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HinfI GANTC 2 cut(s) 875, 953
HphI GGTGA 2 cut(s) 32, 1024
Hpy166II GTNNAC 3 cut(s) 574, 928, 1042
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 3 cut(s) 212, 392, 803
Hpy8I GTNNAC 3 cut(s) 574, 928, 1042
Hpy99I CGWCG 2 cut(s) 932, 975
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 8 cut(s) 85, 242, 318, 502, 758, 834, 857, 963
HpyCH4IV ACGT 5 cut(s) 228, 620, 749, 973, 1038
HpyCH4V TGCA 3 cut(s) 248, 304, 340
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 5 cut(s) 228, 620, 749, 973, 1038
Hsp92I GRCGYC 1 cut(s) 930
Hsp92II CATG 2 cut(s) 632, 1034
HspAI GCGC 1 cut(s) 578
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 2 cut(s) 683, 867
LpnPI CCDG 4 cut(s) 108, 157, 436, 463
LweI GCATC 3 cut(s) 189, 484, 854
MaeI CTAG 2 cut(s) 219, 476
MaeII ACGT 5 cut(s) 228, 620, 749, 973, 1038
MaeIII GTNAC 4 cut(s) 125, 224, 652, 963
MalI GATC 1 cut(s) 136
MbiI CCGCTC 1 cut(s) 686
MboI GATC 1 cut(s) 134
MboII GAAGA 4 cut(s) 521, 703, 704, 839
MhlI GDGCHC 1 cut(s) 62
MlyI GAGTC 1 cut(s) 947
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 5 cut(s) 349, 424, 810, 894, 990
MseI TTAA 7 cut(s) 47, 191, 362, 378, 437, 462, 623
MslI CAYNNNNRTG 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 451
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 1 cut(s) 451
MvnI CGCG 1 cut(s) 578
NdeII GATC 1 cut(s) 134
NlaIII CATG 2 cut(s) 632, 1034
NlaIV GGNNCC 1 cut(s) 946
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 1 cut(s) 632
PciI ACATGT 1 cut(s) 628
PcsI WCGNNNNNNNCGW 1 cut(s) 948
PctI GAATGC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 875
PkrI GCNGC 1 cut(s) 983
PleI GAGTC 1 cut(s) 947
PpsI GAGTC 1 cut(s) 947
Ppu21I YACGTR 1 cut(s) 229
PscI ACATGT 1 cut(s) 628
PshBI ATTAAT 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 946
RsaI GTAC 6 cut(s) 28, 591, 619, 818, 919, 1041
RsaNI GTAC 6 cut(s) 27, 590, 618, 817, 918, 1040
RseI CAYNNNNRTG 1 cut(s) 492
SalI GTCGAC 1 cut(s) 926
SaqAI TTAA 7 cut(s) 47, 191, 362, 378, 437, 462, 623
SatI GCNGC 1 cut(s) 982
Sau3AI GATC 1 cut(s) 134
ScaI AGTACT 1 cut(s) 818
SchI GAGTC 1 cut(s) 947
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 3 cut(s) 189, 484, 854
SfcI CTRYAG 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
SpeI ACTAGT 1 cut(s) 218
SsiI CCGC 6 cut(s) 18, 636, 686, 866, 982, 1018
SspMI CTAG 2 cut(s) 219, 476
StyD4I CCNGG 1 cut(s) 449
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 8 cut(s) 85, 242, 318, 502, 758, 834, 857, 963
TaiI ACGT 5 cut(s) 231, 623, 752, 976, 1041
TaqI TCGA 4 cut(s) 213, 391, 896, 927
TaqII GACCGA 1 cut(s) 755
TatI WGTACW 2 cut(s) 26, 816
TauI GCSGC 1 cut(s) 984
TfiI GAWTC 1 cut(s) 875
Tru1I TTAA 7 cut(s) 47, 191, 362, 378, 437, 462, 623
Tru9I TTAA 7 cut(s) 47, 191, 362, 378, 437, 462, 623
TscAI CASTG 3 cut(s) 342, 507, 616
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 6 cut(s) 27, 66, 398, 413, 703, 765
TspRI CASTG 3 cut(s) 342, 507, 616
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 4 cut(s) 67, 142, 187, 512
XceI RCATGY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 927
XspI CTAG 2 cut(s) 219, 476
ZrmI AGTACT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.