Rh7BG257500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000491
Physical Location & Seq
Forward (+)
23450599 .. 23450889
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG257500.1

Sequence Viewer

Length: 291 bp
ATGCAGTCGGCAACTATAGAATTGGAGGAGATTGAGGAGTCAAAACAGATGAAGATGAAGAACTTGGAATTAGATAAAGGTAGAGGAGAATCAAGAGAAGACGTTGCGGTTACAGGTGCATCTACATCCAGTACTGTTGAACAGAGACTTGAACAGATGCTTTGCGAGCAGCTGGTTCTAGTCCGACAGATTCGTGATGATATGGCTACACAGGGACGAAGATTAGATGGCATGGCTGCATTCTTAGCCACGTTGGGATATCCAGGCATACCGGCTCCTCCTGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.56

Weight (kDa)

4.69

Isoelectric Point (pI)

66.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AfaI GTAC 1 cut(s) 133
AgsI TTSAA 2 cut(s) 140, 152
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 139
ApeKI GCWGC 2 cut(s) 169, 236
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 181, 223
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 170, 237
BlsI GCNGC 2 cut(s) 171, 238
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 128, 147
BpiI GAAGAC 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 4 cut(s) 41, 50, 99, 267
BseXI GCAGC 2 cut(s) 181, 223
BsgI GTGCAG 1 cut(s) 267
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 228
BsmI GAATGC 1 cut(s) 239
BspACI CCGC 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 139
BstMWI GCNNNNNNNGC 3 cut(s) 166, 245, 281
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 2 cut(s) 181, 223
BstV2I GAAGAC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 271
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 232
CviJI RGCY 5 cut(s) 172, 206, 236, 248, 275
CviKI_1 RGCY 5 cut(s) 172, 206, 236, 248, 275
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 1 cut(s) 244
Eco32I GATATC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 262
EcoRV GATATC 1 cut(s) 260
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 17, 203, 233, 269
FaqI GGGAC 1 cut(s) 228
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 170, 237
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 170, 237
FspBI CTAG 1 cut(s) 179
GluI GCNGC 2 cut(s) 170, 237
HapII CCGG 1 cut(s) 272
Hin1II CATG 1 cut(s) 235
HinfI GANTC 3 cut(s) 38, 89, 190
HpaII CCGG 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 2 cut(s) 93, 194
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 102, 251
HpyCH4V TGCA 4 cut(s) 4, 119, 239, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 245, 281
HpyF3I CTNAG 1 cut(s) 244
HpySE526I ACGT 2 cut(s) 102, 251
Hsp92II CATG 1 cut(s) 235
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 7 cut(s) 99, 142, 158, 197, 249, 276, 285
Lsp1109I GCAGC 2 cut(s) 181, 223
LweI GCATC 2 cut(s) 128, 147
MaeI CTAG 1 cut(s) 179
MaeII ACGT 2 cut(s) 102, 251
MaeIII GTNAC 1 cut(s) 109
MboII GAAGA 4 cut(s) 64, 70, 110, 231
MluCI AATT 2 cut(s) 20, 68
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 4 cut(s) 19, 28, 77, 288
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 166, 245, 281
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 276
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 2 cut(s) 89, 190
PkrI GCNGC 2 cut(s) 171, 238
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 276
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SatI GCNGC 2 cut(s) 170, 237
ScaI AGTACT 1 cut(s) 133
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 264
SetI ASST 6 cut(s) 82, 105, 118, 174, 254, 289
SfaNI GCATC 2 cut(s) 128, 147
SfcI CTRYAG 1 cut(s) 15
Sse9I AATT 2 cut(s) 20, 68
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 2 cut(s) 105, 254
TasI AATT 2 cut(s) 20, 68
TatI WGTACW 1 cut(s) 131
TfiI GAWTC 2 cut(s) 89, 190
TseI GCWGC 2 cut(s) 169, 236
TspDTI ATGAA 2 cut(s) 65, 71
XspI CTAG 1 cut(s) 179
ZrmI AGTACT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.