Rorug05G0054100

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000491
Physical Location & Seq
Forward (+)
4708021 .. 4708536
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0054100.1

Sequence Viewer

Length: 426 bp
ATGTCTCCAGCGTCTCCGAATGGTAGCTGGTCTGGTGAGTCGGAAGAACATCAACACAAAACATCTAGTCCTCCCGTTAAGCCCGAGACAGTACCGGGAACTGACAATGACAACAGCCAGCAAGCTCAAGAGTTGCATGAACGATGTAGTGGTTTTCTGATGTCGACAAAATTGAAGGCACTTGCTCAACAGATGACGGCGATTGGTGAAATTAATTCGAAACTTGACATAACAGAAGAGCTTGCTCAGATTGCTGATCTAGAATCAAGGTTTAAGTGCTCAAAACAGGAGGTTGAAAGAGCTATTATCGCCTGTGAGGGTGATATTCAAAAGGCGGCTGAAAGCTTAAGAGCATCAAAGCAAGACCCACCTTCGATTTCACCTAAGCCAGAAGAAACTGGTGACCCTCTAGTTAGTTTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.27

Weight (kDa)

4.79

Isoelectric Point (pI)

66.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 164
AciI CCGC 1 cut(s) 335
AfaI GTAC 1 cut(s) 93
AflII CTTAAG 1 cut(s) 346
AgsI TTSAA 3 cut(s) 175, 296, 329
AluBI AGCT 5 cut(s) 27, 125, 241, 302, 345
AluI AGCT 5 cut(s) 27, 125, 241, 302, 345
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 3 cut(s) 9, 18, 80
Ama87I CYCGRG 1 cut(s) 83
AseI ATTAAT 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 5 cut(s) 47, 218, 332, 372, 413
AsuII TTCGAA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 213
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 3 cut(s) 9, 18, 80
BfaI CTAG 3 cut(s) 66, 260, 410
BfrI CTTAAG 1 cut(s) 346
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 95
BsmAI GTCTC 3 cut(s) 9, 18, 80
BsmBI CGTCTC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 231
BspT104I TTCGAA 1 cut(s) 218
BspTI CTTAAG 1 cut(s) 346
BsrI ACTGG 1 cut(s) 403
BssMI GATC 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 231
BstAFI CTTAAG 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 119, 123, 243
BstDEI CTNAG 2 cut(s) 246, 384
BstEII GGTNACC 1 cut(s) 401
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 3 cut(s) 9, 18, 80
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 251, 308
BstPI GGTNACC 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 94
Cac8I GCNNGC 3 cut(s) 119, 123, 243
Csp6I GTAC 1 cut(s) 92
CviAII CATG 1 cut(s) 137
CviJI RGCY 9 cut(s) 27, 82, 117, 125, 241, 302, 338, 345, 388
CviKI_1 RGCY 9 cut(s) 27, 82, 117, 125, 241, 302, 338, 345, 388
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 2 cut(s) 246, 384
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 83
Eco91I GGTNACC 1 cut(s) 401
EcoO65I GGTNACC 1 cut(s) 401
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 1 cut(s) 140
FaiI YATR 2 cut(s) 138, 230
FatI CATG 1 cut(s) 136
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 3 cut(s) 66, 260, 410
GluI GCNGC 1 cut(s) 336
HapII CCGG 1 cut(s) 95
Hin1II CATG 1 cut(s) 140
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 2 cut(s) 38, 263
HpaII CCGG 1 cut(s) 95
HphI GGTGA 5 cut(s) 47, 218, 332, 372, 413
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 4 cut(s) 18, 43, 159, 249
Hpy188III TCNNGA 2 cut(s) 128, 260
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 169, 381
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 308
HpyF3I CTNAG 2 cut(s) 246, 384
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 256
LguI GCTCTTC 1 cut(s) 231
LpnPI CCDG 9 cut(s) 13, 18, 21, 108, 131, 272, 325, 384, 402
LweI GCATC 1 cut(s) 362
MaeI CTAG 3 cut(s) 66, 260, 410
MaeIII GTNAC 1 cut(s) 401
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 3 cut(s) 56, 248, 404
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 3 cut(s) 170, 210, 214
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 4 cut(s) 81, 283, 310, 417
MseI TTAA 4 cut(s) 78, 213, 273, 347
MspCI CTTAAG 1 cut(s) 346
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 251, 308
NciI CCSGG 1 cut(s) 96
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 401
NspV TTCGAA 1 cut(s) 218
PciSI GCTCTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PshBI ATTAAT 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 401
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SalI GTCGAC 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 4 cut(s) 78, 213, 273, 347
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 1 cut(s) 256
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 281
SetI ASST 9 cut(s) 29, 127, 243, 272, 294, 304, 347, 373, 385
SfaNI GCATC 1 cut(s) 362
SfuI TTCGAA 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 126, 346
SmoI CTYRAG 2 cut(s) 126, 346
Sse9I AATT 3 cut(s) 170, 210, 214
SsiI CCGC 1 cut(s) 335
SspMI CTAG 3 cut(s) 66, 260, 410
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 3 cut(s) 164, 218, 374
TasI AATT 3 cut(s) 170, 210, 214
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 4 cut(s) 78, 213, 273, 347
Tru9I TTAA 4 cut(s) 78, 213, 273, 347
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 153
Vha464I CTTAAG 1 cut(s) 346
VspI ATTAAT 1 cut(s) 213
XbaI TCTAGA 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 3 cut(s) 66, 260, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.