Rmu_co8510723.1_g000001

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8510723.1
OG0000491
Physical Location & Seq
Reverse (-)
2 .. 1213
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8510723.1_g000001.1.cds

Sequence Viewer

Length: 658 bp
atggagagtccagaagtttcagatgaaggttcatgttctccagcttcaactaggaaaacaaggtcaacagttagaagtcgaatttgggaaagcttgttagcaattacaattccgatttggagttgcacaggatcagcagcatctggaatatgggaaacaggttcaatagtcgcatgcatgattgcgagagcatgttacgcagttgcatatttaatttggaaagcaggcaccttcgtcgcagtaaaatgggaacgggcatttgtgctatcatgtattgcagtctcattggatcctttattcctttacattccaatcgtcgatgagactaacaagtgccttaacatggacaagacgttgagaactacagctctcgtccttcgcacactcacggatttccttttattaacccatatcgtagctgaaatttgtcaatgtatccaggaccagaaggacaaagaatattatttgtcaaccgacaagtacttgtcgaccgactaccccaagtatttgtccgaagactcgaatccccattccgaatacgacaaggagtttgatcgcgacccggaggcgttatgcatatatccagtgaagtcattcgttgatactaaactgccgtggttaactccctctgtcatcatcaaattacttgctattattc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

219

Amino Acids

24.69

Weight (kDa)

5.14

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 488
AccII CGCG 1 cut(s) 558
AclWI GGATC 3 cut(s) 139, 284, 297
AcsI RAATTY 2 cut(s) 81, 423
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 2 cut(s) 48, 165
AjnI CCWGG 1 cut(s) 438
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
AluBI AGCT 4 cut(s) 44, 93, 368, 419
AluI AGCT 4 cut(s) 44, 93, 368, 419
Alw26I GTCTC 2 cut(s) 286, 317
AlwI GGATC 3 cut(s) 139, 284, 297
AlwNI CAGNNNCTG 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 81, 423
ArsI GACNNNNNNTTYG 2 cut(s) 533, 565
Asp700I GAANNNNTTC 1 cut(s) 593
AspS9I GGNCC 1 cut(s) 442
AsuC2I CCSGG 1 cut(s) 563
AvaII GGWCC 1 cut(s) 442
BamHI GGATCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 598
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 1 cut(s) 440
BciVI GTATCC 1 cut(s) 446
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 2 cut(s) 286, 317
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 363
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 2 cut(s) 440, 563
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 2 cut(s) 229, 291
BmrFI CCNGG 2 cut(s) 440, 563
BmsI GCATC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 563
BsaJI CCNNGG 1 cut(s) 614
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 584
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 1 cut(s) 614
BseLI CCNNNNNNNGG 1 cut(s) 343
BseNI ACTGG 1 cut(s) 584
BseXI GCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 558
Bsh1285I CGRYCG 1 cut(s) 492
BshNI GGYRCC 1 cut(s) 227
BsiEI CGRYCG 1 cut(s) 492
BsiSI CCGG 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 2 cut(s) 286, 317
Bsp143I GATC 3 cut(s) 131, 289, 553
Bsp68I TCGCGA 1 cut(s) 558
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 229, 291
BspPI GGATC 3 cut(s) 139, 284, 297
BspT107I GGYRCC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 584
BssECI CCNNGG 1 cut(s) 614
BssMI GATC 3 cut(s) 131, 289, 553
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 175, 226
BstDSI CCRYGG 1 cut(s) 614
BstFNI CGCG 1 cut(s) 558
BstKTI GATC 3 cut(s) 134, 292, 556
BstMAI GTCTC 2 cut(s) 286, 317
BstMBI GATC 3 cut(s) 131, 289, 553
BstMCI CGRYCG 1 cut(s) 492
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 2 cut(s) 177, 195
BstSCI CCNGG 2 cut(s) 438, 561
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 522
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuI GTATCC 1 cut(s) 446
BtgI CCRYGG 1 cut(s) 614
BtsIMutI CAGTG 1 cut(s) 591
BtuMI TCGCGA 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 175, 226
CaiI CAGNNNCTG 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 442
Csp6I GTAC 1 cut(s) 481
CviAII CATG 6 cut(s) 33, 174, 178, 192, 270, 343
CviJI RGCY 4 cut(s) 44, 93, 368, 419
CviKI_1 RGCY 4 cut(s) 44, 93, 368, 419
CviQI GTAC 1 cut(s) 481
DpnI GATC 3 cut(s) 133, 291, 555
DpnII GATC 3 cut(s) 131, 289, 553
Eco47I GGWCC 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 438
EcoT22I ATGCAT 2 cut(s) 179, 578
FaeI CATG 6 cut(s) 36, 177, 181, 195, 273, 346
FatI CATG 6 cut(s) 32, 173, 177, 191, 269, 342
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 51
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 24
HapII CCGG 1 cut(s) 563
Hin1II CATG 6 cut(s) 36, 177, 181, 195, 273, 346
HincII GTYRAC 4 cut(s) 66, 471, 489, 621
HindII GTYRAC 4 cut(s) 66, 471, 489, 621
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 3 cut(s) 7, 518, 523
HpaI GTTAAC 1 cut(s) 621
HpaII CCGG 1 cut(s) 563
Hpy166II GTNNAC 4 cut(s) 66, 471, 489, 621
Hpy188I TCNGA 4 cut(s) 22, 114, 514, 535
Hpy188III TCNNGA 3 cut(s) 11, 144, 557
Hpy8I GTNNAC 4 cut(s) 66, 471, 489, 621
Hpy99I CGWCG 2 cut(s) 239, 320
HpyAV CCTTC 4 cut(s) 20, 241, 386, 442
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 5 cut(s) 126, 177, 206, 278, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 6 cut(s) 36, 177, 181, 195, 273, 346
KspAI GTTAAC 1 cut(s) 621
Kzo9I GATC 3 cut(s) 131, 289, 553
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 149
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 194
MalI GATC 3 cut(s) 133, 291, 555
MboI GATC 3 cut(s) 131, 289, 553
MboII GAAGA 1 cut(s) 527
MflI RGATCY 1 cut(s) 289
MluCI AATT 6 cut(s) 81, 102, 108, 213, 423, 641
MlyI GAGTC 2 cut(s) 16, 512
MnlI CCTC 2 cut(s) 559, 637
Mph1103I ATGCAT 2 cut(s) 179, 578
MroXI GAANNNNTTC 1 cut(s) 593
MseI TTAA 4 cut(s) 212, 339, 404, 620
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 2 cut(s) 440, 563
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 563
NdeII GATC 3 cut(s) 131, 289, 553
NlaIII CATG 6 cut(s) 36, 177, 181, 195, 273, 346
NlaIV GGNNCC 2 cut(s) 229, 291
NruI TCGCGA 1 cut(s) 558
NsiI ATGCAT 2 cut(s) 179, 578
NspI RCATGY 2 cut(s) 177, 195
PaeI GCATGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 593
PfeI GAWTC 1 cut(s) 523
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 2 cut(s) 15, 512
PpsI GAGTC 2 cut(s) 15, 512
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 2 cut(s) 229, 291
PspPI GGNCC 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 289
RruI TCGCGA 1 cut(s) 558
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SalI GTCGAC 1 cut(s) 487
SaqAI TTAA 4 cut(s) 212, 339, 404, 620
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 3 cut(s) 131, 289, 553
Sau96I GGNCC 1 cut(s) 442
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 2 cut(s) 16, 512
ScrFI CCNGG 2 cut(s) 440, 563
SetI ASST 9 cut(s) 31, 46, 65, 95, 163, 233, 356, 370, 421
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 442
SphI GCATGC 1 cut(s) 177
Sse9I AATT 6 cut(s) 81, 102, 108, 213, 423, 641
SspI AATATT 1 cut(s) 461
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 438, 561
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 356
TaqI TCGA 4 cut(s) 79, 318, 488, 521
TaqII GACCGA 1 cut(s) 506
TasI AATT 6 cut(s) 81, 102, 108, 213, 423, 641
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 4 cut(s) 212, 339, 404, 620
Tru9I TTAA 4 cut(s) 212, 339, 404, 620
TscAI CASTG 1 cut(s) 591
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 21, 39
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 591
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 2 cut(s) 81, 423
XceI RCATGY 2 cut(s) 177, 195
XmiI GTMKAC 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 1 cut(s) 51
ZrmI AGTACT 1 cut(s) 482
Zsp2I ATGCAT 2 cut(s) 179, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.