Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000491

Physical Location & Seq

Genomic Coordinates Forward (+)

23449365 .. 23449637

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG257400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATTATGACCAAGCGTCTTCAGAAAGGTGAGTACTATGGAGAGGAAGTGTTAAATTGGGCATCAATGAACTATGAGCTCCAGTATCGCAAATGTCGGCAAACACTTCCTATTTCGACCCGAGATGTCAAATGCCTTACCAAAGTCGAAGCCGTTTCTATCAATGCCGAGTTCTCATTATCGTTACTAAAACGTATCAGCCGCTGGAGGCAGAAGTCGGTGAAGCCGACACTTACCCATGACAACACTGATGAGACATTTAACAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008455 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009312 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0030246 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

MGAT2

Protein Analysis

90

Amino Acids

10.66

Weight (kDa)

9.55

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis	RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata	RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora	Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa	Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha	Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana	Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	5
AfaI	GTAC	1 cut(s)	35
AhdI	GACNNNNNGTC	1 cut(s)	15
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	41, 232
AvaI	CYCGRG	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	248
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
BmcAI	AGTACT	1 cut(s)	35
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	2 cut(s)	65, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bse1I	ACTGG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	204
CseI	GACGC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	4 cut(s)	79, 152, 201, 226
CviKI_1	RGCY	4 cut(s)	79, 152, 201, 226
CviQI	GTAC	1 cut(s)	34
DriI	GACNNNNNGTC	1 cut(s)	15
Eam1105I	GACNNNNNGTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	5
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	1 cut(s)	242
FaiI	YATR	4 cut(s)	8, 39, 75, 240
FatI	CATG	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	202
GsuI	CTGGAG	2 cut(s)	65, 226
HgaI	GACGC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	41, 232
Hpy188I	TCNGA	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	2 cut(s)	95, 190
LweI	GCATC	1 cut(s)	71
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	183
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	55
MnlI	CCTC	2 cut(s)	37, 201
MseI	TTAA	3 cut(s)	53, 261, 271
MspA1I	CMGCKG	1 cut(s)	204
NlaIII	CATG	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	204
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	53, 261, 271
SatI	GCNGC	1 cut(s)	202
ScaI	AGTACT	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	4 cut(s)	31, 81, 196, 270
SfaNI	GCATC	1 cut(s)	71
SgeI	CNNG	7 cut(s)	25, 94, 132, 134, 181, 217, 251
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	202
SstI	GAGCTC	1 cut(s)	81
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	116, 147
TasI	AATT	1 cut(s)	55
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	204
Tru1I	TTAA	3 cut(s)	53, 261, 271
Tru9I	TTAA	3 cut(s)	53, 261, 271
TscAI	CASTG	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.