Rroxscaffold_5G00360130

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000491
Physical Location & Seq
Reverse (-)
40431345 .. 40439506
8162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360130.1

Sequence Viewer

Length: 969 bp
ATGGCCGCTACCGGAGGCCTCATGTTTGGCTGCGAACAATGTTGCTTTACAGCACCAGTTAACAACTTAGACGGTTTGGTACCCAGTCCAAAGACTCCAACTCCAACTTCAATTAGGAAAGCATGGTTGGCAGTTACAACTCCAAAAACATGGTCAACAGTTACGAGTCGAATTTGGGAAATACTGTCAGAAGCAACCATTCGAATTGTGAGGAGGACACGGCCAACAGTCACAGACGTAGTTATGATATTATACAGAGTCATCTGTATCCCTTCAATGAAGTGGGAAGGAGCATTGGTAATATCCTGTATTGCACTTTCACTGGATCCTCTGTTCTTATATATTCCAATCATCGATGAGAAGAACAAGTGCCTTGCAGTGGAGAAGAAGTTGAGAACTATAGCTCTTGGCCTTCGACTACTTACAGATATCCCTTTAACAGTCCATTTTATAGCTCAGATTTGTGGTGCGGTAGACACCGACCACCCCAACTTGGCCGACTCCGATTCTGATAACTTTAACTTGGACTCCGGCTCCGGCTCCGACGCCGACTCCGACTCCGACTTCGAGACAACATCGTGTTCACAAAACTCTGTTAAAAAGAGTAAGGCTAGGAGGATGCCGTGGTTATCTGTCATAATTAACTTCCTTGCTATTCTACCCATCCCACAGAACGAGAGACATCTTGTTGGCATCAAGTTTGTAGAAATACTCCAGGTTGTGAAGCTACTTTTGATTGCAATGCTGCTGACAAAATATATGGAGTTGGCAACTACCAAAGTTTTGGATGCTGAGAAATCAAGACAGAGTAAAATTAAAGCAAAGAGAGTACAAATAGAAGAGTGGATGTCAAGTACCCATATGCTTCAAAAGATGGATGAAAATGGGTTGAAAAGCTTGTGCGAATACATGAAGCCAGTGATATACAAGGAGAGTGACAGCATTGTTAAAGAGAGATCACCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

322

Amino Acids

35.94

Weight (kDa)

8.5

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 474
AciI CCGC 2 cut(s) 6, 470
AclWI GGATC 2 cut(s) 320, 333
AcoI YGGCCR 3 cut(s) 3, 221, 495
AcsI RAATTY 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 546
AfaI GTAC 3 cut(s) 81, 831, 856
AfiI CCNNNNNNNGG 2 cut(s) 379, 493
AgsI TTSAA 4 cut(s) 111, 276, 869, 892
AjnI CCWGG 1 cut(s) 714
AjuI GAANNNNNNNTTGG 4 cut(s) 91, 110, 123, 142
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 5 cut(s) 404, 455, 727, 897, 965
AluI AGCT 5 cut(s) 404, 455, 727, 897, 965
Alw26I GTCTC 2 cut(s) 563, 673
AlwI GGATC 2 cut(s) 320, 333
AoxI GGCC 5 cut(s) 3, 16, 221, 409, 495
ApeKI GCWGC 2 cut(s) 30, 745
ApoI RAATTY 1 cut(s) 171
ArsI GACNNNNNNTTYG 4 cut(s) 137, 169, 548, 580
Asp718I GGTACC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 951
AsuII TTCGAA 1 cut(s) 202
BamHI GGATCC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 17, 732
BccI CCATC 2 cut(s) 671, 868
BceAI ACGGC 2 cut(s) 236, 607
BciT130I CCWGG 1 cut(s) 716
BciVI GTATCC 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 563, 673
BfaI CTAG 1 cut(s) 612
BfmI CTRYAG 1 cut(s) 399
BfuI GTATCC 1 cut(s) 278
BisI GCNGC 3 cut(s) 6, 31, 746
BlsI GCNGC 3 cut(s) 7, 32, 747
Bme1390I CCNGG 1 cut(s) 716
BmiI GGNNCC 4 cut(s) 81, 327, 535, 541
BmrFI CCNGG 1 cut(s) 716
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 3 cut(s) 609, 702, 778
BmuI ACTGGG 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 698
Bpu14I TTCGAA 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 623
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 493
Bse1I ACTGG 4 cut(s) 56, 84, 327, 917
Bse3DI GCAATG 1 cut(s) 747
BseBI CCWGG 1 cut(s) 716
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 623
BseGI GGATG 5 cut(s) 624, 663, 793, 852, 883
BseLI CCNNNNNNNGG 2 cut(s) 379, 493
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 2 cut(s) 470, 783
BseNI ACTGG 4 cut(s) 56, 84, 327, 917
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 17, 732
BshFI GGCC 5 cut(s) 5, 18, 223, 411, 497
BshNI GGYRCC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 354
BsiSI CCGG 3 cut(s) 12, 531, 537
BslI CCNNNNNNNGG 2 cut(s) 379, 493
BsmAI GTCTC 2 cut(s) 563, 673
BsnI GGCC 5 cut(s) 5, 18, 223, 411, 497
Bsp119I TTCGAA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 325, 956
BspACI CCGC 2 cut(s) 6, 470
BspANI GGCC 5 cut(s) 5, 18, 223, 411, 497
BspCNI CTCAG 2 cut(s) 469, 784
BspDI ATCGAT 1 cut(s) 354
BspLI GGNNCC 4 cut(s) 81, 327, 535, 541
BspPI GGATC 2 cut(s) 320, 333
BspT104I TTCGAA 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 747
BsrI ACTGG 4 cut(s) 56, 84, 327, 917
BssECI CCNNGG 1 cut(s) 623
BssMI GATC 2 cut(s) 325, 956
BssNI GRCGYC 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 716
Bst4CI ACNGT 5 cut(s) 74, 160, 186, 229, 442
Bst6I CTCTTC 1 cut(s) 834
BstACI GRCGYC 1 cut(s) 546
BstBI TTCGAA 1 cut(s) 202
BstDEI CTNAG 3 cut(s) 67, 456, 792
BstDSI CCRYGG 1 cut(s) 623
BstF5I GGATG 5 cut(s) 624, 663, 793, 852, 883
BstKTI GATC 2 cut(s) 328, 959
BstMAI GTCTC 2 cut(s) 563, 673
BstMBI GATC 2 cut(s) 325, 956
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 716
BstSCI CCNGG 1 cut(s) 714
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 2 cut(s) 17, 732
BstX2I RGATCY 1 cut(s) 325
BstXI CCANNNNNNTGG 2 cut(s) 150, 784
BstYI RGATCY 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 354
BsuI GTATCC 1 cut(s) 278
BsuRI GGCC 5 cut(s) 5, 18, 223, 411, 497
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 623
BtsCI GGATG 5 cut(s) 624, 663, 793, 852, 883
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 3 cut(s) 320, 384, 924
ClaI ATCGAT 1 cut(s) 354
CseI GACGC 1 cut(s) 554
Csp6I GTAC 3 cut(s) 80, 830, 855
CviAII CATG 4 cut(s) 22, 123, 150, 910
CviQI GTAC 3 cut(s) 80, 830, 855
DdeI CTNAG 3 cut(s) 67, 456, 792
DpnI GATC 2 cut(s) 327, 958
DpnII GATC 2 cut(s) 325, 956
EaeI YGGCCR 3 cut(s) 3, 221, 495
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
Eco147I AGGCCT 1 cut(s) 18
Eco32I GATATC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 714
EcoRV GATATC 1 cut(s) 430
FaeI CATG 4 cut(s) 25, 126, 153, 913
FatI CATG 4 cut(s) 21, 122, 149, 909
FauNDI CATATG 1 cut(s) 861
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 3 cut(s) 6, 31, 746
FokI GGATG 5 cut(s) 631, 650, 800, 859, 890
Fsp4HI GCNGC 3 cut(s) 6, 31, 746
FspBI CTAG 1 cut(s) 612
GluI GCNGC 3 cut(s) 6, 31, 746
GsuI CTGGAG 1 cut(s) 698
HaeIII GGCC 5 cut(s) 5, 18, 223, 411, 497
HapII CCGG 3 cut(s) 12, 531, 537
HgaI GACGC 1 cut(s) 554
Hin1I GRCGYC 1 cut(s) 546
Hin1II CATG 4 cut(s) 25, 126, 153, 913
HincII GTYRAC 2 cut(s) 61, 156
HindII GTYRAC 2 cut(s) 61, 156
HindIII AAGCTT 1 cut(s) 895
HinfI GANTC 8 cut(s) 94, 166, 258, 500, 506, 527, 551, 557
HpaI GTTAAC 1 cut(s) 61
HpaII CCGG 3 cut(s) 12, 531, 537
HphI GGTGA 1 cut(s) 951
Hpy166II GTNNAC 4 cut(s) 61, 156, 475, 584
Hpy188I TCNGA 7 cut(s) 190, 459, 505, 511, 544, 556, 562
Hpy188III TCNNGA 2 cut(s) 568, 801
Hpy8I GTNNAC 4 cut(s) 61, 156, 475, 584
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 3 cut(s) 281, 282, 422
HpyCH4III ACNGT 5 cut(s) 74, 160, 186, 229, 442
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 314, 377, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 3 cut(s) 67, 456, 792
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 546
Hsp92II CATG 4 cut(s) 25, 126, 153, 913
KpnI GGTACC 1 cut(s) 83
KspAI GTTAAC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 325, 956
LmnI GCTCC 3 cut(s) 290, 539, 545
Lsp1109I GCAGC 2 cut(s) 17, 732
LweI GCATC 3 cut(s) 609, 702, 778
MaeI CTAG 1 cut(s) 612
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 4 cut(s) 133, 160, 229, 935
MalI GATC 2 cut(s) 327, 958
MboI GATC 2 cut(s) 325, 956
MboII GAAGA 3 cut(s) 373, 397, 851
MflI RGATCY 1 cut(s) 325
MluCI AATT 5 cut(s) 111, 171, 204, 639, 813
MlyI GAGTC 7 cut(s) 88, 175, 267, 494, 521, 545, 551
MmeI TCCRAC 5 cut(s) 122, 128, 567, 579, 585
MnlI CCTC 6 cut(s) 8, 29, 204, 207, 339, 609
MseI TTAA 7 cut(s) 60, 437, 519, 597, 642, 816, 948
MspI CCGG 3 cut(s) 12, 531, 537
MspR9I CCNGG 1 cut(s) 716
MvaI CCWGG 1 cut(s) 716
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeI CATATG 1 cut(s) 861
NdeII GATC 2 cut(s) 325, 956
NlaIII CATG 4 cut(s) 25, 126, 153, 913
NlaIV GGNNCC 4 cut(s) 81, 327, 535, 541
NmuCI GTSAC 2 cut(s) 229, 935
NspV TTCGAA 1 cut(s) 202
PceI AGGCCT 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 3 cut(s) 7, 32, 747
PleI GAGTC 7 cut(s) 88, 174, 266, 494, 521, 545, 551
PpsI GAGTC 7 cut(s) 88, 174, 266, 494, 521, 545, 551
Psp6I CCWGG 1 cut(s) 714
PspGI CCWGG 1 cut(s) 714
PspN4I GGNNCC 4 cut(s) 81, 327, 535, 541
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 3 cut(s) 81, 831, 856
RsaNI GTAC 3 cut(s) 80, 830, 855
SaqAI TTAA 7 cut(s) 60, 437, 519, 597, 642, 816, 948
SatI GCNGC 3 cut(s) 6, 31, 746
Sau3AI GATC 2 cut(s) 325, 956
SchI GAGTC 7 cut(s) 88, 175, 267, 494, 521, 545, 551
ScrFI CCNGG 1 cut(s) 716
SetI ASST 7 cut(s) 240, 406, 457, 720, 729, 899, 967
SfaNI GCATC 3 cut(s) 609, 702, 778
SfcI CTRYAG 1 cut(s) 399
SfuI TTCGAA 1 cut(s) 202
Sse9I AATT 5 cut(s) 111, 171, 204, 639, 813
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 2 cut(s) 6, 470
SspMI CTAG 1 cut(s) 612
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 714
TaaI ACNGT 5 cut(s) 74, 160, 186, 229, 442
TaiI ACGT 1 cut(s) 240
TaqI TCGA 5 cut(s) 169, 202, 354, 415, 567
TasI AATT 5 cut(s) 111, 171, 204, 639, 813
TatI WGTACW 1 cut(s) 829
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 7 cut(s) 60, 437, 519, 597, 642, 816, 948
Tru9I TTAA 7 cut(s) 60, 437, 519, 597, 642, 816, 948
TscAI CASTG 3 cut(s) 327, 384, 924
TseFI GTSAC 2 cut(s) 229, 935
TseI GCWGC 2 cut(s) 30, 745
Tsp45I GTSAC 2 cut(s) 229, 935
TspDTI ATGAA 3 cut(s) 293, 894, 926
TspRI CASTG 3 cut(s) 327, 384, 924
XapI RAATTY 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.