Rorug02G0451400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000491
Physical Location & Seq
Reverse (-)
57894378 .. 57898002
3625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0451400.1

Sequence Viewer

Length: 1758 bp
ATGAGTTCCTTTAAGGGCTACGGCAAAGTCGACGAGCTCGAAGAGCAAGCCTTCCGTCTCAAAACCCGCAAGCGCTTGCTCATCGTCACCGTCTCCGTCATTGTCCTCTTGGCCGTCATCATCGGCGCCGTCACCGGCACCGTCATCCACAACCGCAACAGCTCCTCTTCTCCGTCGCCGAACACGGAACCCGCCACCCAGTTGACTCCCTCCGCTTCCTTAAAAGCCGTCTGCGGCGTCACCCAGTACCCCAACTCGTGCTTCTCCAGCATCTCTTCTCTCAAAAACTCCAACACCACCGACCCGGAAGCGCTGTTCAAGCTGTCCCTGCATGTCGCCATTAACGAGGCCTCGAAGCTCAAAGACTTGCCTACAGCAATAAAGAGTAAGATCGGAAATGATACCAAACTCGAAAGCGCTATTAAGGTCTGCGAGACCGTCTTCGATGATGCTGTGGATAAGCTTAACGATTCGCTCTCTGCAATGGATGTCAGTTCCGGCGAGAAGCTGTTGTCCGAGGCGAAGATCAATGACCTGAAGACGTGGATCAGCGCCACCATGACTGACCAAGAGACCTGCCTGGACTCTCTTGAAGACATCAATTCGACTTATGTTCAGGTTTTCAGGGATGCTATGCAGAACTCCACAGAATACGCCAGCAACAGCCTGGCCATTGTGGCGAAAATTCTGGGGTTATTGTCCAATTTGAACATTCCGGTTCACCGGAGATTGCTCGGGTACGGAGGAGAAACATCCTCCGTACCCGAGTTCCCGGGCTGGGTCAGCCCGGGAGACAGGAGGCTGCTGCAGCAGCAGAACCTGACCGCGCACGTGATTGTGGCGAAGGATGGGACTGGGGATTTTAAGACCATTCAGGAGGCTGTGAATGCTGTGCCCACGAAGAACTTGAGCAGGTTTGTGATATATGTGAAGCAAGGGACGTACGAAGAAAATGTGAATATGGACAAGAGCAAATGGAATGTGATGATGTATGGAGATGGCAAGACCAAGACCATTGTTTCTGGGAATTTGAACTATGTGGATGGGACTGCAACTTTCAACACAGCCACTTTTGCTGTTGCAGGAAGAGGGTTCATTGCGAAAGATATAGGGTTCATTAACACTGCTGGAGCTGCAAAGCACCAAGCGGTGGCATTCCGATCTGGTTCCGACCAATCTGTGTTCTGCAGATGCTCATTTGATGCATTCCAGGACACTCTCTATGCTCACTCAAATCGACAATTCTATCGTGATTGTGACATCACTGGCACCATTGACTTCATCTTTGGCAATGCAGCTGTGGTGTTCCAGAACTGTAACATCAAGCCGAGGCAACCAATGCCAAACCAGTTCAACACAATCACTGCTCAGGGAAAGAAGGACCCCAATCAAAACACTGGCATTTCAATCCAGAAGTGCACAATCTCTCCACTCGAAAGCAACATGACAGCTCTAACATTTCTTGGTAGACCTTGGAAGAACTTTTCCACCACGGTTTTCTTACAATCCAGTATTGGTTCGTTCTTGAACCCATCGGGGTGGACAGAATGGATTTCCAATGTTGATCCACCTAACACCATATTTTACGCAGAATACCAAAATAGTGGACCAGGATCGAGTGTGGATAAAAGGGTTACATGGGCTGGTTACAGGCCCTCTCTCACAGATACTGAAGCAGCCAAGTTCACAGTTGAGTCCTTCATCCAAGGTAATGAATGGTTGCCGCAGACTAATGTGAATTTTGAGACATCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

585

Amino Acids

64.02

Weight (kDa)

6.36

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 73 - 225 1.7e-30 Plant invertase/pectin methylesterase inhibitor
Pectinesterase PF01095 277 - 571 3.1e-140 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 584, 903
AccB1I GGYRCC 3 cut(s) 125, 137, 1268
AccB7I CCANNNNNTGG 1 cut(s) 1150
AccI GTMKAC 2 cut(s) 30, 1468
AccII CGCG 1 cut(s) 827
AciI CCGC 8 cut(s) 67, 154, 192, 213, 234, 825, 1148, 1724
AclWI GGATC 3 cut(s) 554, 1559, 1621
AcoI YGGCCR 2 cut(s) 111, 669
AcsI RAATTY 3 cut(s) 684, 1027, 1738
AcuI CTGAAG 2 cut(s) 557, 1692
AcvI CACGTG 1 cut(s) 832
AcyI GRCGYC 2 cut(s) 126, 237
AfaI GTAC 4 cut(s) 248, 740, 762, 944
AfeI AGCGCT 3 cut(s) 74, 312, 418
AfiI CCNNNNNNNGG 2 cut(s) 778, 1150
AgsI TTSAA 8 cut(s) 319, 593, 709, 1033, 1060, 1354, 1407, 1528
AjiI CACGTC 1 cut(s) 543
AjnI CCWGG 4 cut(s) 579, 666, 1209, 1609
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 9 cut(s) 37, 162, 322, 358, 463, 508, 1133, 1298, 1451
AluI AGCT 9 cut(s) 37, 162, 322, 358, 463, 508, 1133, 1298, 1451
Alw21I GWGCWC 2 cut(s) 39, 1421
Alw26I GTCTC 6 cut(s) 62, 97, 428, 566, 786, 1739
Alw44I GTGCAC 1 cut(s) 1417
AlwI GGATC 3 cut(s) 554, 1559, 1621
AlwNI CAGNNNCTG 2 cut(s) 820, 1670
Ama87I CYCGRG 4 cut(s) 734, 764, 772, 787
Aor51HI AGCGCT 3 cut(s) 74, 312, 418
AoxI GGCC 4 cut(s) 111, 348, 669, 1652
ApaLI GTGCAC 1 cut(s) 1417
ApeKI GCWGC 7 cut(s) 802, 805, 808, 811, 1133, 1295, 1676
ApoI RAATTY 3 cut(s) 684, 1027, 1738
ArsI GACNNNNNNTTYG 2 cut(s) 1268, 1300
AspLEI GCGC 6 cut(s) 75, 128, 313, 419, 554, 829
AspS9I GGNCC 3 cut(s) 1381, 1607, 1653
AsuC2I CCSGG 5 cut(s) 305, 773, 774, 788, 789
AsuHPI GGTGA 4 cut(s) 79, 124, 232, 713
AvaI CYCGRG 4 cut(s) 734, 764, 772, 787
AvaII GGWCC 2 cut(s) 1381, 1607
BaeGI GKGCMC 2 cut(s) 897, 1421
BalI TGGCCA 1 cut(s) 671
BanI GGYRCC 3 cut(s) 125, 137, 1268
BanII GRGCYC 1 cut(s) 39
BauI CACGAG 1 cut(s) 256
BbrPI CACGTG 1 cut(s) 832
BbsI GAAGAC 3 cut(s) 433, 545, 600
Bbv12I GWGCWC 2 cut(s) 39, 1421
BbvI GCAGC 7 cut(s) 789, 792, 820, 823, 1120, 1307, 1688
BccI CCATC 4 cut(s) 842, 992, 1037, 1540
BceAI ACGGC 4 cut(s) 37, 98, 113, 212
BciT130I CCWGG 4 cut(s) 581, 668, 1211, 1611
BcnI CCSGG 5 cut(s) 305, 773, 774, 788, 789
BcoDI GTCTC 6 cut(s) 62, 97, 428, 566, 786, 1739
BfmI CTRYAG 3 cut(s) 372, 806, 1186
BfoI RGCGCY 5 cut(s) 76, 129, 314, 420, 555
BfuAI ACCTGC 2 cut(s) 584, 903
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 9 cut(s) 235, 803, 806, 809, 812, 1134, 1296, 1677, 1724
BlsI GCNGC 9 cut(s) 236, 804, 807, 810, 813, 1135, 1297, 1678, 1725
Bme1390I CCNGG 9 cut(s) 305, 581, 668, 773, 774, 788, 789, 1211, 1611
Bme18I GGWCC 2 cut(s) 1381, 1607
BmeT110I CYCGRG 4 cut(s) 734, 764, 772, 787
BmgBI CACGTC 1 cut(s) 543
BmgT120I GGNCC 3 cut(s) 1381, 1607, 1653
BmiI GGNNCC 6 cut(s) 127, 139, 189, 1168, 1270, 1383
BmrFI CCNGG 9 cut(s) 305, 581, 668, 773, 774, 788, 789, 1211, 1611
BmrI ACTGGG 3 cut(s) 193, 238, 864
BmsI GCATC 5 cut(s) 279, 439, 619, 1181, 1192
BmuI ACTGGG 3 cut(s) 193, 238, 864
BpiI GAAGAC 3 cut(s) 433, 545, 600
BpmI CTGGAG 2 cut(s) 250, 1149
Bpu10I CCTNAGC 1 cut(s) 1368
BpuEI CTTGAG 1 cut(s) 928
BpuMI CCSGG 5 cut(s) 305, 773, 774, 788, 789
BsaAI YACGTR 1 cut(s) 832
BsaHI GRCGYC 2 cut(s) 126, 237
BsaI GGTCTC 2 cut(s) 428, 566
BsaJI CCNNGG 7 cut(s) 516, 772, 787, 1328, 1472, 1491, 1705
BsaWI WCCGGW 2 cut(s) 715, 723
BsaXI ACNNNNNCTCC 2 cut(s) 1411, 1441
Bsc4I CCNNNNNNNGG 2 cut(s) 778, 1150
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 7 cut(s) 199, 244, 859, 1270, 1348, 1402, 1509
Bse3DI GCAATG 3 cut(s) 489, 1095, 1297
BseBI CCWGG 4 cut(s) 581, 668, 1211, 1611
BseDI CCNNGG 7 cut(s) 516, 772, 787, 1328, 1472, 1491, 1705
BseGI GGATG 8 cut(s) 144, 493, 634, 752, 853, 1048, 1701, 1748
BseLI CCNNNNNNNGG 2 cut(s) 778, 1150
BseMI GCAATG 3 cut(s) 489, 1095, 1297
BseMII CTCAG 1 cut(s) 1382
BseNI ACTGG 7 cut(s) 199, 244, 859, 1270, 1348, 1402, 1509
BseRI GAGGAG 2 cut(s) 154, 759
BseSI GKGCMC 2 cut(s) 897, 1421
BseXI GCAGC 7 cut(s) 789, 792, 820, 823, 1120, 1307, 1688
BseYI CCCAGC 1 cut(s) 777
Bsh1236I CGCG 1 cut(s) 827
BshFI GGCC 4 cut(s) 113, 350, 671, 1654
BshNI GGYRCC 3 cut(s) 125, 137, 1268
BsiHKAI GWGCWC 2 cut(s) 39, 1421
BsiHKCI CYCGRG 4 cut(s) 734, 764, 772, 787
BsiSI CCGG 7 cut(s) 135, 305, 498, 716, 724, 773, 788
BsiWI CGTACG 1 cut(s) 942
BslFI GGGAC 4 cut(s) 310, 865, 952, 1060
BslI CCNNNNNNNGG 2 cut(s) 778, 1150
BsmAI GTCTC 6 cut(s) 62, 97, 428, 566, 786, 1739
BsmBI CGTCTC 2 cut(s) 62, 97
BsmFI GGGAC 4 cut(s) 310, 865, 952, 1060
BsmI GAATGC 3 cut(s) 892, 1154, 1205
BsnI GGCC 4 cut(s) 113, 350, 671, 1654
Bso31I GGTCTC 2 cut(s) 428, 566
BsoBI CYCGRG 4 cut(s) 734, 764, 772, 787
Bsp1286I GDGCHC 3 cut(s) 39, 897, 1421
Bsp143I GATC 6 cut(s) 390, 525, 546, 1160, 1564, 1613
BspACI CCGC 8 cut(s) 67, 154, 192, 213, 234, 825, 1148, 1724
BspANI GGCC 4 cut(s) 113, 350, 671, 1654
BspCNI CTCAG 1 cut(s) 1381
BspFNI CGCG 1 cut(s) 827
BspLI GGNNCC 6 cut(s) 127, 139, 189, 1168, 1270, 1383
BspMAI CTGCAG 2 cut(s) 810, 1190
BspMI ACCTGC 2 cut(s) 584, 903
BspPI GGATC 3 cut(s) 554, 1559, 1621
BspQI GCTCTTC 1 cut(s) 36
BspT107I GGYRCC 3 cut(s) 125, 137, 1268
BspTNI GGTCTC 2 cut(s) 428, 566
BsrDI GCAATG 3 cut(s) 489, 1095, 1297
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 7 cut(s) 199, 244, 859, 1270, 1348, 1402, 1509
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 7 cut(s) 516, 772, 787, 1328, 1472, 1491, 1705
BssMI GATC 6 cut(s) 390, 525, 546, 1160, 1564, 1613
BssNI GRCGYC 2 cut(s) 126, 237
BssSI CACGAG 1 cut(s) 256
BssT1I CCWWGG 2 cut(s) 1472, 1705
Bst2BI CACGAG 1 cut(s) 256
Bst2UI CCWGG 4 cut(s) 581, 668, 1211, 1611
Bst4CI ACNGT 6 cut(s) 91, 142, 439, 1316, 1495, 1690
Bst6I CTCTTC 4 cut(s) 36, 172, 280, 1081
BstACI GRCGYC 2 cut(s) 126, 237
BstAPI GCANNNNNTGC 1 cut(s) 1339
BstBAI YACGTR 1 cut(s) 832
BstC8I GCNNGC 4 cut(s) 48, 71, 77, 658
BstDEI CTNAG 1 cut(s) 1368
BstDSI CCRYGG 1 cut(s) 1491
BstF5I GGATG 8 cut(s) 144, 493, 634, 752, 853, 1048, 1701, 1748
BstFNI CGCG 1 cut(s) 827
BstH2I RGCGCY 5 cut(s) 76, 129, 314, 420, 555
BstHHI GCGC 6 cut(s) 75, 128, 313, 419, 554, 829
BstKTI GATC 6 cut(s) 393, 528, 549, 1163, 1567, 1616
BstMAI GTCTC 6 cut(s) 62, 97, 428, 566, 786, 1739
BstMBI GATC 6 cut(s) 390, 525, 546, 1160, 1564, 1613
BstNI CCWGG 4 cut(s) 581, 668, 1211, 1611
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 9 cut(s) 303, 579, 666, 771, 772, 786, 787, 1209, 1609
BstSFI CTRYAG 3 cut(s) 372, 806, 1186
BstSLI GKGCMC 2 cut(s) 897, 1421
BstUI CGCG 1 cut(s) 827
BstV1I GCAGC 7 cut(s) 789, 792, 820, 823, 1120, 1307, 1688
BstV2I GAAGAC 3 cut(s) 433, 545, 600
BstXI CCANNNNNNTGG 2 cut(s) 1539, 1604
BsuRI GGCC 4 cut(s) 113, 350, 671, 1654
BtgI CCRYGG 1 cut(s) 1491
BtrI CACGTC 1 cut(s) 543
BtsCI GGATG 8 cut(s) 144, 493, 634, 752, 853, 1048, 1701, 1748
BtsI GCAGTG 2 cut(s) 1122, 1362
BtsIMutI CAGTG 4 cut(s) 1122, 1263, 1362, 1395
BveI ACCTGC 2 cut(s) 584, 903
Cac8I GCNNGC 4 cut(s) 48, 71, 77, 658
CaiI CAGNNNCTG 2 cut(s) 820, 1670
CfoI GCGC 6 cut(s) 75, 128, 313, 419, 554, 829
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 1381, 1607, 1653
Cfr9I CCCGGG 2 cut(s) 772, 787
CseI GACGC 1 cut(s) 226
Csp6I GTAC 4 cut(s) 247, 739, 761, 943
CviAII CATG 4 cut(s) 332, 559, 1444, 1638
CviQI GTAC 4 cut(s) 247, 739, 761, 943
DdeI CTNAG 1 cut(s) 1368
DinI GGCGCC 1 cut(s) 127
DpnI GATC 6 cut(s) 392, 527, 548, 1162, 1566, 1615
DpnII GATC 6 cut(s) 390, 525, 546, 1160, 1564, 1613
EaeI YGGCCR 2 cut(s) 111, 669
Eam1104I CTCTTC 4 cut(s) 36, 172, 280, 1081
EarI CTCTTC 4 cut(s) 36, 172, 280, 1081
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 1472, 1705
Eco147I AGGCCT 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 2 cut(s) 428, 566
Eco47I GGWCC 2 cut(s) 1381, 1607
Eco47III AGCGCT 3 cut(s) 74, 312, 418
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 557, 1692
Eco72I CACGTG 1 cut(s) 832
Eco88I CYCGRG 4 cut(s) 734, 764, 772, 787
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 2 cut(s) 1381, 1653
EcoRII CCWGG 4 cut(s) 579, 666, 1209, 1609
EcoT14I CCWWGG 2 cut(s) 1472, 1705
EcoT22I ATGCAT 1 cut(s) 1207
EcoT38I GRGCYC 1 cut(s) 39
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 1472, 1705
Esp3I CGTCTC 2 cut(s) 62, 97
FaeI CATG 4 cut(s) 335, 562, 1447, 1641
FaqI GGGAC 4 cut(s) 310, 865, 952, 1060
FatI CATG 4 cut(s) 331, 558, 1443, 1637
FauI CCCGC 2 cut(s) 74, 199
FblI GTMKAC 2 cut(s) 30, 1468
Fnu4HI GCNGC 9 cut(s) 235, 803, 806, 809, 812, 1134, 1296, 1677, 1724
FokI GGATG 8 cut(s) 131, 500, 641, 739, 860, 1055, 1688, 1735
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 9 cut(s) 235, 803, 806, 809, 812, 1134, 1296, 1677, 1724
GlaI GCGC 6 cut(s) 74, 127, 312, 418, 553, 828
GluI GCNGC 9 cut(s) 235, 803, 806, 809, 812, 1134, 1296, 1677, 1724
GsaI CCCAGC 1 cut(s) 781
GsuI CTGGAG 2 cut(s) 250, 1149
HaeII RGCGCY 5 cut(s) 76, 129, 314, 420, 555
HaeIII GGCC 4 cut(s) 113, 350, 671, 1654
HapII CCGG 7 cut(s) 135, 305, 498, 716, 724, 773, 788
HgaI GACGC 1 cut(s) 226
HhaI GCGC 6 cut(s) 75, 128, 313, 419, 554, 829
Hin1I GRCGYC 2 cut(s) 126, 237
Hin1II CATG 4 cut(s) 335, 562, 1447, 1641
Hin6I GCGC 6 cut(s) 73, 126, 311, 417, 552, 827
HinP1I GCGC 6 cut(s) 73, 126, 311, 417, 552, 827
HincII GTYRAC 2 cut(s) 31, 204
HindII GTYRAC 2 cut(s) 31, 204
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 4 cut(s) 205, 470, 584, 1694
HpaII CCGG 7 cut(s) 135, 305, 498, 716, 724, 773, 788
HphI GGTGA 4 cut(s) 79, 124, 232, 713
Hpy166II GTNNAC 8 cut(s) 31, 204, 721, 1419, 1469, 1542, 1607, 1686
Hpy188I TCNGA 4 cut(s) 395, 517, 1160, 1171
Hpy188III TCNNGA 6 cut(s) 590, 875, 1250, 1309, 1411, 1525
Hpy8I GTNNAC 8 cut(s) 31, 204, 721, 1419, 1469, 1542, 1607, 1686
Hpy99I CGWCG 2 cut(s) 35, 178
HpyAV CCTTC 4 cut(s) 61, 838, 1372, 1708
HpyCH4III ACNGT 6 cut(s) 91, 142, 439, 1316, 1495, 1690
HpyCH4IV ACGT 3 cut(s) 542, 831, 941
HpyF3I CTNAG 1 cut(s) 1368
HpySE526I ACGT 3 cut(s) 542, 831, 941
Hsp92I GRCGYC 2 cut(s) 126, 237
Hsp92II CATG 4 cut(s) 335, 562, 1447, 1641
HspAI GCGC 6 cut(s) 73, 126, 311, 417, 552, 827
KasI GGCGCC 1 cut(s) 125
Kzo9I GATC 6 cut(s) 390, 525, 546, 1160, 1564, 1613
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 2 cut(s) 167, 1130
Lsp1109I GCAGC 7 cut(s) 789, 792, 820, 823, 1120, 1307, 1688
LweI GCATC 5 cut(s) 279, 439, 619, 1181, 1192
MaeII ACGT 3 cut(s) 542, 831, 941
MaeIII GTNAC 7 cut(s) 85, 130, 238, 1256, 1316, 1633, 1646
MalI GATC 6 cut(s) 392, 527, 548, 1162, 1566, 1615
MboI GATC 6 cut(s) 390, 525, 546, 1160, 1564, 1613
MhlI GDGCHC 3 cut(s) 39, 897, 1421
MlsI TGGCCA 1 cut(s) 671
MluCI AATT 6 cut(s) 601, 684, 703, 1027, 1241, 1738
MluNI TGGCCA 1 cut(s) 671
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 3 cut(s) 199, 578, 1703
MmeI TCCRAC 2 cut(s) 315, 1194
Mox20I TGGCCA 1 cut(s) 671
Mph1103I ATGCAT 1 cut(s) 1207
MscI TGGCCA 1 cut(s) 671
MseI TTAA 7 cut(s) 12, 221, 342, 423, 465, 864, 1119
MslI CAYNNNNRTG 2 cut(s) 1537, 1753
Msp20I TGGCCA 1 cut(s) 671
MspA1I CMGCKG 1 cut(s) 1298
MspI CCGG 7 cut(s) 135, 305, 498, 716, 724, 773, 788
MspR9I CCNGG 9 cut(s) 305, 581, 668, 773, 774, 788, 789, 1211, 1611
Mva1269I GAATGC 3 cut(s) 892, 1154, 1205
MvaI CCWGG 4 cut(s) 581, 668, 1211, 1611
MvnI CGCG 1 cut(s) 827
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 5 cut(s) 305, 773, 774, 788, 789
NdeII GATC 6 cut(s) 390, 525, 546, 1160, 1564, 1613
NlaIII CATG 4 cut(s) 335, 562, 1447, 1641
NlaIV GGNNCC 6 cut(s) 127, 139, 189, 1168, 1270, 1383
NmeAIII GCCGAG 1 cut(s) 1353
NmuCI GTSAC 4 cut(s) 85, 130, 238, 1256
NsiI ATGCAT 1 cut(s) 1207
NspI RCATGY 1 cut(s) 335
PceI AGGCCT 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 36
PcsI WCGNNNNNNNCGW 3 cut(s) 27, 36, 342
PctI GAATGC 3 cut(s) 892, 1154, 1205
PfeI GAWTC 1 cut(s) 470
Pfl23II CGTACG 1 cut(s) 942
PflMI CCANNNNNTGG 1 cut(s) 1150
PfoI TCCNGGA 1 cut(s) 1209
PkrI GCNGC 9 cut(s) 236, 804, 807, 810, 813, 1135, 1297, 1678, 1725
PleI GAGTC 3 cut(s) 199, 578, 1702
PluTI GGCGCC 1 cut(s) 129
PmaCI CACGTG 1 cut(s) 832
PmlI CACGTG 1 cut(s) 832
PpsI GAGTC 3 cut(s) 199, 578, 1702
Ppu21I YACGTR 1 cut(s) 832
PpuMI RGGWCCY 1 cut(s) 1381
Psp124BI GAGCTC 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 1381
Psp6I CCWGG 4 cut(s) 579, 666, 1209, 1609
PspCI CACGTG 1 cut(s) 832
PspFI CCCAGC 1 cut(s) 777
PspGI CCWGG 4 cut(s) 579, 666, 1209, 1609
PspLI CGTACG 1 cut(s) 942
PspN4I GGNNCC 6 cut(s) 127, 139, 189, 1168, 1270, 1383
PspPI GGNCC 3 cut(s) 1381, 1607, 1653
PspPPI RGGWCCY 1 cut(s) 1381
PstI CTGCAG 2 cut(s) 810, 1190
PstNI CAGNNNCTG 2 cut(s) 820, 1670
PvuII CAGCTG 1 cut(s) 1298
RsaI GTAC 4 cut(s) 248, 740, 762, 944
RsaNI GTAC 4 cut(s) 247, 739, 761, 943
RseI CAYNNNNRTG 2 cut(s) 1537, 1753
SacI GAGCTC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 7 cut(s) 12, 221, 342, 423, 465, 864, 1119
SatI GCNGC 9 cut(s) 235, 803, 806, 809, 812, 1134, 1296, 1677, 1724
Sau3AI GATC 6 cut(s) 390, 525, 546, 1160, 1564, 1613
Sau96I GGNCC 3 cut(s) 1381, 1607, 1653
SchI GAGTC 3 cut(s) 199, 578, 1703
ScrFI CCNGG 9 cut(s) 305, 581, 668, 773, 774, 788, 789, 1211, 1611
SduI GDGCHC 3 cut(s) 39, 897, 1421
SfaNI GCATC 5 cut(s) 279, 439, 619, 1181, 1192
SfcI CTRYAG 3 cut(s) 372, 806, 1186
SfoI GGCGCC 1 cut(s) 127
SinI GGWCC 2 cut(s) 1381, 1607
SmaI CCCGGG 2 cut(s) 774, 789
SmiMI CAYNNNNRTG 2 cut(s) 1537, 1753
SmlI CTYRAG 1 cut(s) 907
SmoI CTYRAG 1 cut(s) 907
Sse9I AATT 6 cut(s) 601, 684, 703, 1027, 1241, 1738
SseBI AGGCCT 1 cut(s) 350
SsiI CCGC 8 cut(s) 67, 154, 192, 213, 234, 825, 1148, 1724
SspDI GGCGCC 1 cut(s) 125
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 350
StyD4I CCNGG 9 cut(s) 303, 579, 666, 771, 772, 786, 787, 1209, 1609
StyI CCWWGG 2 cut(s) 1472, 1705
TaaI ACNGT 6 cut(s) 91, 142, 439, 1316, 1495, 1690
TaiI ACGT 3 cut(s) 545, 834, 944
TaqI TCGA 9 cut(s) 30, 39, 353, 411, 444, 605, 1237, 1434, 1616
TasI AATT 6 cut(s) 601, 684, 703, 1027, 1241, 1738
TauI GCSGC 2 cut(s) 237, 1726
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 7 cut(s) 12, 221, 342, 423, 465, 864, 1119
Tru9I TTAA 7 cut(s) 12, 221, 342, 423, 465, 864, 1119
TscAI CASTG 4 cut(s) 1129, 1270, 1369, 1402
TseFI GTSAC 4 cut(s) 85, 130, 238, 1256
TseI GCWGC 7 cut(s) 802, 805, 808, 811, 1133, 1295, 1676
Tsp45I GTSAC 4 cut(s) 85, 130, 238, 1256
TspDTI ATGAA 5 cut(s) 1084, 1105, 1270, 1690, 1728
TspGWI ACGGA 6 cut(s) 44, 85, 162, 200, 748, 756
TspMI CCCGGG 2 cut(s) 772, 787
TspRI CASTG 4 cut(s) 1129, 1270, 1369, 1402
Van91I CCANNNNNTGG 1 cut(s) 1150
VneI GTGCAC 1 cut(s) 1417
VpaK11BI GGWCC 2 cut(s) 1381, 1607
XapI RAATTY 3 cut(s) 684, 1027, 1738
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XmaI CCCGGG 2 cut(s) 772, 787
XmiI GTMKAC 2 cut(s) 30, 1468
Zsp2I ATGCAT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.