Rmu_sc0000344.1_g000022

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000344.1
OG0000491
Physical Location & Seq
Reverse (-)
78136 .. 78759
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000344.1_g000022.1.cds

Sequence Viewer

Length: 624 bp
atggatatctccaccgcttggctgggtgaaaccgtgaaactcaattgctgttatgtccagcatcctaatactaagaaggcattttttggttttgttttgaggaatgataaacaagatttcattgcggcaggaggtggcacttataagtttattgatagctttgaagctggagctcttagtatacagcgctgtttgaggtccactatgaagtatttgaaaacaagtcagatagttgtggagtctgatgacaagcttctcatcgatttcctcaatgattggccttcacactcagatgacaaacgagttcgagatatccttcgacccacccttcaaaatattgccaatgatattcaaaagttcaaatgtcacaaatttgagcattgtaagcgccaggttaatgaagcggcgcttcgcgtagcagaacatgctcgtgtttctggttctaaagagtgggaaaaagctgaagaaataccaggactagttgatgccttgaagaaagatagtccgcgtccggagcaaaaccaagatttgcctcaagaggtcaacgacagtggcgcgtctagttcagctggtgctgctcataggttggaggaaatcattcaggacaagtcacaggaggcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

207

Amino Acids

23.36

Weight (kDa)

6.09

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 18
AccI GTMKAC 1 cut(s) 181
AccII CGCG 3 cut(s) 414, 508, 557
AccIII TCCGGA 1 cut(s) 511
AciI CCGC 4 cut(s) 15, 125, 404, 506
AcsI RAATTY 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 483
AfeI AGCGCT 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 6 cut(s) 164, 217, 332, 353, 361, 493
AhlI ACTAGT 1 cut(s) 478
AjnI CCWGG 2 cut(s) 390, 472
AluBI AGCT 6 cut(s) 159, 167, 173, 253, 461, 569
AluI AGCT 6 cut(s) 159, 167, 173, 253, 461, 569
Alw21I GWGCWC 1 cut(s) 175
Aor13HI TCCGGA 1 cut(s) 511
Aor51HI AGCGCT 1 cut(s) 188
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 1 cut(s) 371
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 4 cut(s) 189, 390, 409, 557
AspS9I GGNCC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 175
BauI CACGAG 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 562
BciT130I CCWGG 2 cut(s) 392, 474
BcuI ACTAGT 1 cut(s) 478
BfaI CTAG 2 cut(s) 479, 561
BfoI RGCGCY 3 cut(s) 190, 391, 410
BisI GCNGC 3 cut(s) 126, 405, 576
BlsI GCNGC 3 cut(s) 127, 406, 577
Bme1390I CCNGG 2 cut(s) 392, 474
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 392, 474
BmsI GCATC 2 cut(s) 70, 475
BpmI CTGGAG 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 519
Bsa29I ATCGAT 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 120
BseAI TCCGGA 1 cut(s) 511
BseBI CCWGG 2 cut(s) 392, 474
BseCI ATCGAT 1 cut(s) 261
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 562
BseYI CCCAGC 1 cut(s) 22
Bsh1236I CGCG 3 cut(s) 414, 508, 557
BshFI GGCC 1 cut(s) 280
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 18
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 175
Bsp13I TCCGGA 1 cut(s) 511
BspACI CCGC 4 cut(s) 15, 125, 404, 506
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 302
BspDI ATCGAT 1 cut(s) 261
BspEI TCCGGA 1 cut(s) 511
BspFNI CGCG 3 cut(s) 414, 508, 557
BsrDI GCAATG 1 cut(s) 120
BssNAI GTATAC 1 cut(s) 182
BssSI CACGAG 1 cut(s) 429
Bst1107I GTATAC 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 429
Bst2UI CCWGG 2 cut(s) 392, 474
Bst4CI ACNGT 2 cut(s) 34, 551
BstAPI GCANNNNNTGC 1 cut(s) 425
BstDEI CTNAG 3 cut(s) 72, 176, 289
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 3 cut(s) 414, 508, 557
BstH2I RGCGCY 3 cut(s) 190, 391, 410
BstHHI GCGC 4 cut(s) 189, 390, 409, 557
BstMWI GCNNNNNNNGC 4 cut(s) 385, 425, 514, 575
BstNI CCWGG 2 cut(s) 392, 474
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 390, 472
BstUI CGCG 3 cut(s) 414, 508, 557
BstV1I GCAGC 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 182
Bsu15I ATCGAT 1 cut(s) 261
BsuRI GGCC 1 cut(s) 280
BsuTUI ATCGAT 1 cut(s) 261
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 556
CfoI GCGC 4 cut(s) 189, 390, 409, 557
Cfr13I GGNCC 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 2 cut(s) 497, 546
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 2 cut(s) 425, 621
CviJI RGCY 8 cut(s) 22, 159, 167, 173, 253, 280, 461, 569
CviKI_1 RGCY 8 cut(s) 22, 159, 167, 173, 253, 280, 461, 569
DdeI CTNAG 3 cut(s) 72, 176, 289
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco32I GATATC 2 cut(s) 7, 313
Eco47I GGWCC 1 cut(s) 198
Eco47III AGCGCT 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 390, 472
EcoRV GATATC 2 cut(s) 7, 313
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 2 cut(s) 428, 624
FaiI YATR 7 cut(s) 54, 144, 182, 206, 426, 582, 622
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FatI CATG 2 cut(s) 424, 620
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 126, 405, 576
FokI GGATG 1 cut(s) 48
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 3 cut(s) 126, 405, 576
FspBI CTAG 2 cut(s) 479, 561
GlaI GCGC 4 cut(s) 188, 389, 408, 556
GluI GCNGC 3 cut(s) 126, 405, 576
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 3 cut(s) 190, 391, 410
HaeIII GGCC 1 cut(s) 280
HapII CCGG 1 cut(s) 512
HgaI GACGC 2 cut(s) 497, 546
HhaI GCGC 4 cut(s) 189, 390, 409, 557
Hin1II CATG 2 cut(s) 428, 624
Hin6I GCGC 4 cut(s) 187, 388, 407, 555
HinP1I GCGC 4 cut(s) 187, 388, 407, 555
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 512
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 3 cut(s) 182, 201, 544
Hpy188I TCNGA 3 cut(s) 228, 244, 292
Hpy188III TCNNGA 4 cut(s) 308, 512, 536, 602
Hpy8I GTNNAC 3 cut(s) 182, 201, 544
HpyAV CCTTC 4 cut(s) 70, 291, 326, 338
HpyCH4III ACNGT 2 cut(s) 34, 551
HpyF10VI GCNNNNNNNGC 4 cut(s) 385, 425, 514, 575
HpyF3I CTNAG 3 cut(s) 72, 176, 289
Hsp92II CATG 2 cut(s) 428, 624
HspAI GCGC 4 cut(s) 187, 388, 407, 555
Kpn2I TCCGGA 1 cut(s) 511
LmnI GCTCC 2 cut(s) 170, 514
Lsp1109I GCAGC 1 cut(s) 562
LweI GCATC 2 cut(s) 70, 475
MaeI CTAG 2 cut(s) 479, 561
MaeIII GTNAC 2 cut(s) 365, 609
MboII GAAGA 2 cut(s) 476, 505
MfeI CAATTG 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 2 cut(s) 43, 371
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 567
MnlI CCTC 8 cut(s) 93, 125, 189, 278, 532, 543, 583, 610
MroI TCCGGA 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 2 cut(s) 291, 429
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 2 cut(s) 392, 474
MunI CAATTG 1 cut(s) 43
MvaI CCWGG 2 cut(s) 392, 474
MvnI CGCG 3 cut(s) 414, 508, 557
MwoI GCNNNNNNNGC 4 cut(s) 385, 425, 514, 575
NlaIII CATG 2 cut(s) 428, 624
NmuCI GTSAC 2 cut(s) 365, 609
NspI RCATGY 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 597
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 3 cut(s) 127, 406, 577
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PsiI TTATAA 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 390, 472
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 2 cut(s) 390, 472
PspPI GGNCC 1 cut(s) 198
PvuII CAGCTG 1 cut(s) 569
RseI CAYNNNNRTG 2 cut(s) 291, 429
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 3 cut(s) 126, 405, 576
Sau96I GGNCC 1 cut(s) 198
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 392, 474
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 2 cut(s) 70, 475
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 2 cut(s) 291, 429
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
SpeI ACTAGT 1 cut(s) 478
Sse9I AATT 2 cut(s) 43, 371
SsiI CCGC 4 cut(s) 15, 125, 404, 506
SspI AATATT 1 cut(s) 337
SspMI CTAG 2 cut(s) 479, 561
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 390, 472
TaaI ACNGT 2 cut(s) 34, 551
TaqI TCGA 3 cut(s) 261, 307, 319
TasI AATT 2 cut(s) 43, 371
TauI GCSGC 2 cut(s) 128, 407
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 2 cut(s) 365, 609
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 2 cut(s) 365, 609
TspDTI ATGAA 3 cut(s) 109, 221, 414
TspRI CASTG 1 cut(s) 556
Van91I CCANNNNNTGG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 2 cut(s) 479, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.