Rh2BG532700

voltage-gated potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000491
Physical Location & Seq
Reverse (-)
74190550 .. 74193086
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG532700.1

Sequence Viewer

Length: 678 bp
ATGAAGACAGCAATCAGGAAAGACATAAAAGAATGGAACATAGCCGGGAGATACATAGATCATGATGTGGATGTTCGATTTGTCAATAACATTTGTGGAGGAAACATCGTATTAGTCCTGTCGGAATTTTTCCGGCTAAATGCTCTAAAGAAATATCCAGTTCCTAAGGTGAAATGGAAACGTCCTTACCGTGGGTGGCTGAAAGTGAACTGTAGTGCTGTGTGGGAACGTGAATCAAGAGTGGCAGGCATGGCTTGGGTTTGCAGGAACGATGAAGGAGCTTTCGTGGCCGCTGGAAGTCTTGGTGGGATAAGATGCATGGACAGGTTCTTCGCTGAAGCTCTCAGCATCGCTAAGGCTATCGAGTTTTGTACCACTATTATTAGTGATGTTTCTGGCGACAACGTCGGCCGCATAATTGTGGAGTCTGATAACCAGGATCTCATGGATTGCTTGCTTCAGCTGCATGACGAGGACCTATTTGTACCGAAAACATACTTGAACAACTCTAGCTTGGAACCGAATAACCGTATTGGCAAAAACCTTCGACCAATCCTTGGGGATATTTACATCCGCTTGGCTCCAGGGTTTAAGGCTATTACTTACGTGCATTGTGATAGCCAATGTAATGCAGCTGCTCATTGCGTAGCATCTCACGCCATGGATGATGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
6PF2K Ank_2 Ank_4 Ank_5 F-box-like His_Phos_1 LRR_6 PAS_9 Pkinase Pkinase_Tyr RGS cNMP_binding

Protein Analysis

225

Amino Acids

25.33

Weight (kDa)

7.54

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 70 - 155 3.9e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 557
AciI CCGC 3 cut(s) 291, 412, 574
AclWI GGATC 1 cut(s) 447
AcoI YGGCCR 2 cut(s) 288, 409
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 2 cut(s) 357, 443
AfaI GTAC 2 cut(s) 373, 486
AfiI CCNNNNNNNGG 2 cut(s) 191, 557
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 2 cut(s) 435, 583
AluBI AGCT 5 cut(s) 281, 341, 463, 513, 635
AluI AGCT 5 cut(s) 281, 341, 463, 513, 635
AlwI GGATC 1 cut(s) 447
AoxI GGCC 2 cut(s) 288, 409
ApeKI GCWGC 3 cut(s) 463, 632, 635
ApoI RAATTY 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
AspS9I GGNCC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 475
AxyI CCTNAGG 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 450, 622, 644
BciT130I CCWGG 2 cut(s) 437, 585
BcnI CCSGG 1 cut(s) 46
BfaI CTAG 1 cut(s) 510
BfmI CTRYAG 1 cut(s) 211
BisI GCNGC 5 cut(s) 291, 412, 464, 633, 636
BlsI GCNGC 5 cut(s) 292, 413, 465, 634, 637
Bme1390I CCNGG 3 cut(s) 46, 437, 585
Bme18I GGWCC 1 cut(s) 475
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 2 cut(s) 519, 582
BmrFI CCNGG 3 cut(s) 46, 437, 585
BmsI GCATC 3 cut(s) 305, 357, 659
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 567
Bpu10I CCTNAGC 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 190, 556, 584, 660
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 557
Bse1I ACTGG 1 cut(s) 158
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 640
BseBI CCWGG 2 cut(s) 437, 585
BseDI CCNNGG 4 cut(s) 190, 556, 584, 660
BseGI GGATG 3 cut(s) 76, 570, 670
BseLI CCNNNNNNNGG 2 cut(s) 191, 557
BseMI GCAATG 1 cut(s) 640
BseMII CTCAG 1 cut(s) 358
BseNI ACTGG 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 409
BseXI GCAGC 3 cut(s) 450, 622, 644
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 2 cut(s) 290, 411
BsiEI CGRYCG 1 cut(s) 412
BsiSI CCGG 2 cut(s) 45, 133
BslI CCNNNNNNNGG 2 cut(s) 191, 557
BsnI GGCC 2 cut(s) 290, 411
Bsp143I GATC 2 cut(s) 58, 439
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 3 cut(s) 291, 412, 574
BspANI GGCC 2 cut(s) 290, 411
BspCNI CTCAG 1 cut(s) 357
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 519, 582
BspPI GGATC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 640
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 4 cut(s) 190, 556, 584, 660
BssMI GATC 2 cut(s) 58, 439
BssT1I CCWWGG 2 cut(s) 556, 660
Bst2UI CCWGG 2 cut(s) 437, 585
Bst4CI ACNGT 3 cut(s) 191, 212, 530
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 2 cut(s) 247, 455
BstDEI CTNAG 3 cut(s) 165, 344, 354
BstDSI CCRYGG 2 cut(s) 190, 660
BstF5I GGATG 3 cut(s) 76, 570, 670
BstKTI GATC 2 cut(s) 61, 442
BstMBI GATC 2 cut(s) 58, 439
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 4 cut(s) 251, 287, 463, 656
BstNI CCWGG 2 cut(s) 437, 585
BstSCI CCNGG 3 cut(s) 44, 435, 583
BstSFI CTRYAG 1 cut(s) 211
BstV1I GCAGC 3 cut(s) 450, 622, 644
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BstZI CGGCCG 1 cut(s) 409
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 2 cut(s) 290, 411
BtgI CCRYGG 2 cut(s) 190, 660
BtgZI GCGATG 1 cut(s) 334
BtsCI GGATG 3 cut(s) 76, 570, 670
Cac8I GCNNGC 2 cut(s) 247, 455
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 475
Csp6I GTAC 2 cut(s) 372, 485
CviAII CATG 6 cut(s) 62, 250, 319, 445, 467, 661
CviQI GTAC 2 cut(s) 372, 485
DdeI CTNAG 3 cut(s) 165, 344, 354
DpnI GATC 2 cut(s) 60, 441
DpnII GATC 2 cut(s) 58, 439
EaeI YGGCCR 2 cut(s) 288, 409
EagI CGGCCG 1 cut(s) 409
EclXI CGGCCG 1 cut(s) 409
Eco130I CCWWGG 2 cut(s) 556, 660
Eco47I GGWCC 1 cut(s) 475
Eco52I CGGCCG 1 cut(s) 409
Eco57I CTGAAG 2 cut(s) 357, 443
Eco81I CCTNAGG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 475
EcoRII CCWGG 2 cut(s) 435, 583
EcoT14I CCWWGG 2 cut(s) 556, 660
EcoT22I ATGCAT 1 cut(s) 320
ErhI CCWWGG 2 cut(s) 556, 660
FaeI CATG 6 cut(s) 65, 253, 322, 448, 470, 664
FatI CATG 6 cut(s) 61, 249, 318, 444, 466, 660
Fnu4HI GCNGC 5 cut(s) 291, 412, 464, 633, 636
FokI GGATG 2 cut(s) 83, 557
Fsp4HI GCNGC 5 cut(s) 291, 412, 464, 633, 636
FspBI CTAG 1 cut(s) 510
GluI GCNGC 5 cut(s) 291, 412, 464, 633, 636
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 2 cut(s) 290, 411
HapII CCGG 2 cut(s) 45, 133
Hin1II CATG 6 cut(s) 65, 253, 322, 448, 470, 664
HinfI GANTC 2 cut(s) 233, 425
HpaII CCGG 2 cut(s) 45, 133
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 208, 673
Hpy188I TCNGA 2 cut(s) 124, 430
Hpy188III TCNNGA 3 cut(s) 16, 62, 237
Hpy8I GTNNAC 2 cut(s) 208, 673
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 2 cut(s) 269, 554
HpyCH4III ACNGT 3 cut(s) 191, 212, 530
HpyCH4IV ACGT 4 cut(s) 181, 229, 405, 606
HpyCH4V TGCA 5 cut(s) 264, 318, 466, 610, 632
HpyF10VI GCNNNNNNNGC 4 cut(s) 251, 287, 463, 656
HpyF3I CTNAG 3 cut(s) 165, 344, 354
HpySE526I ACGT 4 cut(s) 181, 229, 405, 606
Hsp92II CATG 6 cut(s) 65, 253, 322, 448, 470, 664
Kzo9I GATC 2 cut(s) 58, 439
LmnI GCTCC 2 cut(s) 278, 586
Lsp1109I GCAGC 3 cut(s) 450, 622, 644
LweI GCATC 3 cut(s) 305, 357, 659
MaeI CTAG 1 cut(s) 510
MaeII ACGT 4 cut(s) 181, 229, 405, 606
MalI GATC 2 cut(s) 60, 441
MboI GATC 2 cut(s) 58, 439
MboII GAAGA 2 cut(s) 16, 322
MflI RGATCY 1 cut(s) 439
MluCI AATT 2 cut(s) 125, 417
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 2 cut(s) 92, 466
Mph1103I ATGCAT 1 cut(s) 320
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 3 cut(s) 293, 463, 635
MspI CCGG 2 cut(s) 45, 133
MspR9I CCNGG 3 cut(s) 46, 437, 585
MvaI CCWGG 2 cut(s) 437, 585
MwoI GCNNNNNNNGC 4 cut(s) 251, 287, 463, 656
NciI CCSGG 1 cut(s) 46
NcoI CCATGG 1 cut(s) 660
NdeII GATC 2 cut(s) 58, 439
NlaIII CATG 6 cut(s) 65, 253, 322, 448, 470, 664
NlaIV GGNNCC 2 cut(s) 519, 582
NsiI ATGCAT 1 cut(s) 320
PagI TCATGA 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 557
PkrI GCNGC 5 cut(s) 292, 413, 465, 634, 637
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Ppu21I YACGTR 1 cut(s) 607
PpuMI RGGWCCY 1 cut(s) 475
Psp5II RGGWCCY 1 cut(s) 475
Psp6I CCWGG 2 cut(s) 435, 583
PspGI CCWGG 2 cut(s) 435, 583
PspN4I GGNNCC 2 cut(s) 519, 582
PspPI GGNCC 1 cut(s) 475
PspPPI RGGWCCY 1 cut(s) 475
PsuI RGATCY 1 cut(s) 439
PsyI GACNNNGTC 1 cut(s) 404
PvuII CAGCTG 2 cut(s) 463, 635
RsaI GTAC 2 cut(s) 373, 486
RsaNI GTAC 2 cut(s) 372, 485
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 5 cut(s) 291, 412, 464, 633, 636
Sau3AI GATC 2 cut(s) 58, 439
Sau96I GGNCC 1 cut(s) 475
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 3 cut(s) 46, 437, 585
SfaNI GCATC 3 cut(s) 305, 357, 659
SfcI CTRYAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 2 cut(s) 125, 417
SsiI CCGC 3 cut(s) 291, 412, 574
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 3 cut(s) 44, 435, 583
StyI CCWWGG 2 cut(s) 556, 660
TaaI ACNGT 3 cut(s) 191, 212, 530
TaiI ACGT 4 cut(s) 184, 232, 408, 609
TaqI TCGA 3 cut(s) 76, 363, 547
TasI AATT 2 cut(s) 125, 417
TauI GCSGC 2 cut(s) 293, 414
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TseI GCWGC 3 cut(s) 463, 632, 635
TspDTI ATGAA 2 cut(s) 17, 288
Tth111I GACNNNGTC 1 cut(s) 404
Van91I CCANNNNNTGG 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 475
XapI RAATTY 1 cut(s) 125
XspI CTAG 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.