Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000491

Physical Location & Seq

Genomic Coordinates Forward (+)

76807799 .. 76810492

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG538600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAAAATGTGGATGTCAAGTAATGGTCTCCCCAAGGATTTAAAGACAACAATTAGAGAATATATTAAAAAATCTAACCTAGCGGAGAAATACATAGATGCTCCAGTGAGTCTGAAATTTCTATTCGATTCTACTAGAAACGATGATAGAGATGATATTGCACGTTCTCTGATCCAATATCTAACCGTGAAAGCGCTAAAGAAAGGACCCATGTTTGAGAGTGTCGATGACAGGGACTTGGAACGTGCCGTCGACAATTTGCCGGGGTGGTATTTTATATACTCGGATGTTTCTGCATCTATCTACCCCGAGAATAGCTACATTGTTCGAGCGGGTGAACGGTGTAATCAGGTCATCTTAATCATAGAAGGCGTAATTGAATTGACCGACACAACGTCTAACGGTGCTGAAACAACGGGTTCATCATCAGTGATTAAGACCGAGCGTCTTGAGAAAGGTCAGTACTATGGACAAGAATTGTTGAATTATTTGTCATCATTGATGGGTCAGCAGCTCCCGAATGGGGAAGGGCCTCCTATTTCGCCCCGAGATGTCAAATGTCGTACCAAAGTCGAAGCCCTCTTTATCAAGGCAAGTATATTATTAGATTTACTAGAAAGTGTCAGCCGGGACTACATCTGGAGGCAGAATAAGTGGGTGAAGCGGACACTTGCCGATGACAACACTGATGAGACATTAAACAAGACAAACATGCAGTCGGCAACTACAGAACTGGAGGAGATTGAGGAGTCAAAAAAGATGAAGATGAAAAACATGGAATTAGATAAAGGTAGAGGAGAACCAAGAGAAGACATTGCGGATACGGGTGCATCTACATCCACTACTGTTGAACAGAGACTTGAACAGATTATGCAGCTTCAGGGTGAGATGCTTCGCGAGCAGCTGGTTCTAGTCCGACAGATTCGTGATGATATGGCTACACAGGGACGAAGATTAGATGACATGGCTGCATTCTTAGCCACGTTGGGATATCCAGGCATATCTGCTCCTCCCGCACCTTCAACTCTTGAAGCGCGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008455 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009312 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0030246 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

MGAT2

Protein Analysis

347

Amino Acids

39.29

Weight (kDa)

5.0

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis	RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata	RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora	Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa	Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha	Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana	Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	897, 1036
AciI	CCGC	5 cut(s)	83, 332, 664, 818, 1014
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	863
AfaI	GTAC	2 cut(s)	464, 565
AfeI	AGCGCT	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	6 cut(s)	380, 484, 851, 863, 1023, 1031
AhdI	GACNNNNNGTC	2 cut(s)	394, 444
AjnI	CCWGG	1 cut(s)	994
AluBI	AGCT	4 cut(s)	318, 514, 877, 904
AluI	AGCT	4 cut(s)	318, 514, 877, 904
Alw26I	GTCTC	3 cut(s)	32, 686, 850
AlwI	GGATC	1 cut(s)	166
Ama87I	CYCGRG	2 cut(s)	308, 546
Aor51HI	AGCGCT	1 cut(s)	195
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	4 cut(s)	511, 874, 901, 968
ApoI	RAATTY	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AspLEI	GCGC	3 cut(s)	196, 1036, 1038
AspS9I	GGNCC	2 cut(s)	206, 530
AsuC2I	CCSGG	2 cut(s)	264, 629
AsuHPI	GGTGA	3 cut(s)	347, 670, 896
AvaI	CYCGRG	2 cut(s)	308, 546
AvaII	GGWCC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	816
BbvI	GCAGC	4 cut(s)	523, 886, 913, 955
BccI	CCATC	1 cut(s)	496
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	996
BciVI	GTATCC	1 cut(s)	814
BcnI	CCSGG	2 cut(s)	264, 629
BcoDI	GTCTC	3 cut(s)	32, 686, 850
BfaI	CTAG	4 cut(s)	80, 135, 614, 911
BfmI	CTRYAG	1 cut(s)	726
BfoI	RGCGCY	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	814
BisI	GCNGC	4 cut(s)	512, 875, 902, 969
BlsI	GCNGC	4 cut(s)	513, 876, 903, 970
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	3 cut(s)	264, 629, 996
Bme18I	GGWCC	1 cut(s)	206
BmeRI	GACNNNNNGTC	2 cut(s)	394, 444
BmeT110I	CYCGRG	2 cut(s)	308, 546
BmgT120I	GGNCC	2 cut(s)	206, 530
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	3 cut(s)	264, 629, 996
BmsI	GCATC	4 cut(s)	88, 305, 839, 879
BpiI	GAAGAC	1 cut(s)	816
BpmI	CTGGAG	3 cut(s)	87, 661, 755
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	2 cut(s)	264, 629
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	33, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	2 cut(s)	104, 738
Bse3DI	GCAATG	1 cut(s)	813
BseBI	CCWGG	1 cut(s)	996
BseDI	CCNNGG	2 cut(s)	33, 263
BseGI	GGATG	3 cut(s)	18, 292, 836
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	813
BseNI	ACTGG	2 cut(s)	104, 738
BsePI	GCGCGC	1 cut(s)	1034
BseRI	GAGGAG	4 cut(s)	752, 761, 810, 999
BseXI	GCAGC	4 cut(s)	523, 886, 913, 955
Bsh1236I	CGCG	2 cut(s)	897, 1036
BshFI	GGCC	1 cut(s)	532
BsiHKCI	CYCGRG	2 cut(s)	308, 546
BsiSI	CCGG	2 cut(s)	263, 628
BslFI	GGGAC	3 cut(s)	248, 644, 960
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	3 cut(s)	32, 686, 850
BsmFI	GGGAC	3 cut(s)	248, 644, 960
BsmI	GAATGC	1 cut(s)	971
BsnI	GGCC	1 cut(s)	532
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	2 cut(s)	308, 546
Bsp143I	GATC	1 cut(s)	171
Bsp68I	TCGCGA	1 cut(s)	897
BspACI	CCGC	5 cut(s)	83, 332, 664, 818, 1014
BspANI	GGCC	1 cut(s)	532
BspFNI	CGCG	2 cut(s)	897, 1036
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	813
BsrI	ACTGG	2 cut(s)	104, 738
BssECI	CCNNGG	2 cut(s)	33, 263
BssHII	GCGCGC	1 cut(s)	1034
BssMI	GATC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	996
Bst4CI	ACNGT	4 cut(s)	187, 342, 404, 847
BstC8I	GCNNGC	2 cut(s)	899, 1036
BstDEI	CTNAG	1 cut(s)	976
BstF5I	GGATG	3 cut(s)	18, 292, 836
BstFNI	CGCG	2 cut(s)	897, 1036
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	3 cut(s)	196, 1036, 1038
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	3 cut(s)	32, 686, 850
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	3 cut(s)	898, 977, 1013
BstNI	CCWGG	1 cut(s)	996
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	3 cut(s)	262, 627, 994
BstSFI	CTRYAG	1 cut(s)	726
BstUI	CGCG	2 cut(s)	897, 1036
BstV1I	GCAGC	4 cut(s)	523, 886, 913, 955
BstV2I	GAAGAC	1 cut(s)	816
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	1 cut(s)	532
BtsCI	GGATG	3 cut(s)	18, 292, 836
BtsIMutI	CAGTG	3 cut(s)	111, 435, 684
BtuMI	TCGCGA	1 cut(s)	897
Cac8I	GCNNGC	2 cut(s)	899, 1036
CfoI	GCGC	3 cut(s)	196, 1036, 1038
Cfr13I	GGNCC	2 cut(s)	206, 530
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	463, 564
CspCI	CAANNNNNGTGG	2 cut(s)	829, 864
CviAII	CATG	4 cut(s)	211, 712, 775, 964
CviQI	GTAC	2 cut(s)	463, 564
DdeI	CTNAG	1 cut(s)	976
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DraI	TTTAAA	1 cut(s)	42
DriI	GACNNNNNGTC	2 cut(s)	394, 444
Eam1105I	GACNNNNNGTC	2 cut(s)	394, 444
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	992
Eco47I	GGWCC	1 cut(s)	206
Eco47III	AGCGCT	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	863
Eco88I	CYCGRG	2 cut(s)	308, 546
EcoO109I	RGGNCCY	2 cut(s)	206, 530
EcoRII	CCWGG	1 cut(s)	994
EcoRV	GATATC	1 cut(s)	992
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	4 cut(s)	214, 715, 778, 967
FaqI	GGGAC	3 cut(s)	248, 644, 960
FatI	CATG	4 cut(s)	210, 711, 774, 963
FauI	CCCGC	2 cut(s)	325, 1021
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	512, 875, 902, 969
FokI	GGATG	3 cut(s)	25, 299, 823
Fsp4HI	GCNGC	4 cut(s)	512, 875, 902, 969
FspBI	CTAG	4 cut(s)	80, 135, 614, 911
GlaI	GCGC	3 cut(s)	195, 1035, 1037
GluI	GCNGC	4 cut(s)	512, 875, 902, 969
GsuI	CTGGAG	3 cut(s)	87, 661, 755
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	532
HapII	CCGG	2 cut(s)	263, 628
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	3 cut(s)	196, 1036, 1038
Hin1II	CATG	4 cut(s)	214, 715, 778, 967
Hin6I	GCGC	3 cut(s)	194, 1034, 1036
HinP1I	GCGC	3 cut(s)	194, 1034, 1036
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	109, 128, 749, 922
HpaII	CCGG	2 cut(s)	263, 628
HphI	GGTGA	3 cut(s)	347, 670, 896
Hpy166II	GTNNAC	2 cut(s)	253, 338
Hpy188I	TCNGA	4 cut(s)	114, 171, 286, 917
Hpy188III	TCNNGA	6 cut(s)	449, 517, 640, 896, 926, 1028
Hpy8I	GTNNAC	2 cut(s)	253, 338
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	362, 521, 1029
HpyCH4III	ACNGT	4 cut(s)	187, 342, 404, 847
HpyCH4IV	ACGT	4 cut(s)	163, 244, 395, 983
HpyCH4V	TGCA	6 cut(s)	161, 296, 715, 830, 874, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	898, 977, 1013
HpyF3I	CTNAG	1 cut(s)	976
HpySE526I	ACGT	4 cut(s)	163, 244, 395, 983
Hsp92II	CATG	4 cut(s)	214, 715, 778, 967
HspAI	GCGC	3 cut(s)	194, 1034, 1036
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	3 cut(s)	106, 519, 1012
Lsp1109I	GCAGC	4 cut(s)	523, 886, 913, 955
LweI	GCATC	4 cut(s)	88, 305, 839, 879
MaeI	CTAG	4 cut(s)	80, 135, 614, 911
MaeII	ACGT	4 cut(s)	163, 244, 395, 983
MalI	GATC	1 cut(s)	173
MbiI	CCGCTC	1 cut(s)	332
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	775, 821, 963
MluCI	AATT	8 cut(s)	51, 116, 256, 375, 380, 476, 484, 779
MlyI	GAGTC	2 cut(s)	118, 758
MmeI	TCCRAC	1 cut(s)	940
MnlI	CCTC	7 cut(s)	543, 590, 636, 730, 739, 788, 1020
MseI	TTAA	6 cut(s)	41, 66, 359, 435, 698, 1042
MspA1I	CMGCKG	1 cut(s)	904
MspI	CCGG	2 cut(s)	263, 628
MspR9I	CCNGG	3 cut(s)	264, 629, 996
Mva1269I	GAATGC	1 cut(s)	971
MvaI	CCWGG	1 cut(s)	996
MvnI	CGCG	2 cut(s)	897, 1036
MwoI	GCNNNNNNNGC	3 cut(s)	898, 977, 1013
NciI	CCSGG	2 cut(s)	264, 629
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	4 cut(s)	214, 715, 778, 967
NlaIV	GGNNCC	1 cut(s)	208
NruI	TCGCGA	1 cut(s)	897
NspI	RCATGY	1 cut(s)	715
PauI	GCGCGC	1 cut(s)	1034
PctI	GAATGC	1 cut(s)	971
PfeI	GAWTC	2 cut(s)	128, 922
PkrI	GCNGC	4 cut(s)	513, 876, 903, 970
PleI	GAGTC	2 cut(s)	117, 757
PpsI	GAGTC	2 cut(s)	117, 757
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	994
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	2 cut(s)	206, 530
PspPPI	RGGWCCY	1 cut(s)	206
PteI	GCGCGC	1 cut(s)	1034
PvuII	CAGCTG	1 cut(s)	904
RruI	TCGCGA	1 cut(s)	897
RsaI	GTAC	2 cut(s)	464, 565
RsaNI	GTAC	2 cut(s)	463, 564
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	6 cut(s)	41, 66, 359, 435, 698, 1042
SatI	GCNGC	4 cut(s)	512, 875, 902, 969
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	2 cut(s)	206, 530
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	2 cut(s)	118, 758
ScrFI	CCNGG	3 cut(s)	264, 629, 996
SfaNI	GCATC	4 cut(s)	88, 305, 839, 879
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	8 cut(s)	51, 116, 256, 375, 380, 476, 484, 779
SsiI	CCGC	5 cut(s)	83, 332, 664, 818, 1014
SspMI	CTAG	4 cut(s)	80, 135, 614, 911
StyD4I	CCNGG	3 cut(s)	262, 627, 994
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	4 cut(s)	187, 342, 404, 847
TaiI	ACGT	4 cut(s)	166, 247, 398, 986
TaqI	TCGA	5 cut(s)	126, 225, 252, 328, 573
TaqII	GACCGA	2 cut(s)	401, 455
TasI	AATT	8 cut(s)	51, 116, 256, 375, 380, 476, 484, 779
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	2 cut(s)	128, 922
Tru1I	TTAA	6 cut(s)	41, 66, 359, 435, 698, 1042
Tru9I	TTAA	6 cut(s)	41, 66, 359, 435, 698, 1042
TscAI	CASTG	3 cut(s)	111, 435, 691
TseI	GCWGC	4 cut(s)	511, 874, 901, 968
TspDTI	ATGAA	4 cut(s)	17, 411, 776, 782
TspRI	CASTG	3 cut(s)	111, 435, 691
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	1 cut(s)	715
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	4 cut(s)	80, 135, 614, 911
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.