Rmu_sc0001145.1_g000016

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001145.1
OG0000491
Physical Location & Seq
Reverse (-)
72727 .. 73317
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001145.1_g000016.1.cds

Sequence Viewer

Length: 591 bp
atggtacccagtccaaagactccgactccgactccaattaggaaagcatggttggcagttacaactccaaaaacatggtcaacagttacgagtctaatttgggaaaaactgtcagaagcaaccattcgaattgtgaggaggacacggccaacagtcacagacggagttatatacagagtcatctgtatcccttcaatgaagtgggaaggagcattggtaatatcctgtattgcactttcactggatcctctgttcttatatattccaatcatcgatgagaagaacaagtgcctggcagtggacaagaagttgagaactatagctcttggccttcgactacttacagatatccctttaacagtccattttatagctcagatttgtggtgcggtagacaccgaacgtcccaacttttccgattctgataactttaactccaactccggctccgactccgactccgagacaacatcgtgttcacaaaactctgttaaaaagagtaaggctaggaggatgtcgtggttatctgtcataattaatttccttgctattctacccatcccacaggtaacggagaactttttagtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

196

Amino Acids

21.8

Weight (kDa)

9.2

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 393
AciI CCGC 1 cut(s) 389
AclWI GGATC 2 cut(s) 239, 252
AcoI YGGCCR 1 cut(s) 146
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 195
AjnI CCWGG 1 cut(s) 291
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AloI GAACNNNNNNTCC 2 cut(s) 236, 268
AluBI AGCT 2 cut(s) 323, 374
AluI AGCT 2 cut(s) 323, 374
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 2 cut(s) 239, 252
AoxI GGCC 2 cut(s) 146, 328
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AseI ATTAAT 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 127
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 566
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 293
BciVI GTATCC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 318
BfuI GTATCC 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 293
BmiI GGNNCC 3 cut(s) 6, 246, 448
BmrFI CCNGG 1 cut(s) 293
BmrI ACTGGG 1 cut(s) 3
BmuI ACTGGG 1 cut(s) 3
Bpu14I TTCGAA 1 cut(s) 127
Bsa29I ATCGAT 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 9, 246
BseBI CCWGG 1 cut(s) 293
BseCI ATCGAT 1 cut(s) 273
BseGI GGATG 2 cut(s) 519, 558
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 9, 246
BseRI GAGGAG 1 cut(s) 151
BshFI GGCC 2 cut(s) 148, 330
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 273
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 2 cut(s) 148, 330
Bsp119I TTCGAA 1 cut(s) 127
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 389
BspANI GGCC 2 cut(s) 148, 330
BspCNI CTCAG 1 cut(s) 388
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 6, 246, 448
BspPI GGATC 2 cut(s) 239, 252
BspT104I TTCGAA 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 9, 246
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 4 cut(s) 85, 111, 154, 361
BstBI TTCGAA 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 519, 558
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 75
BstYI RGATCY 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 273
BsuI GTATCC 1 cut(s) 197
BsuRI GGCC 2 cut(s) 148, 330
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 2 cut(s) 519, 558
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 239, 303
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 1 cut(s) 5
CviAII CATG 2 cut(s) 48, 75
CviJI RGCY 6 cut(s) 148, 323, 330, 374, 447, 506
CviKI_1 RGCY 6 cut(s) 148, 323, 330, 374, 447, 506
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 146
Eco32I GATATC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 291
EcoRV GATATC 1 cut(s) 349
FaeI CATG 2 cut(s) 51, 78
FaiI YATR 9 cut(s) 49, 76, 170, 172, 259, 261, 320, 371, 533
FaqI GGGAC 1 cut(s) 390
FatI CATG 2 cut(s) 47, 74
FblI GTMKAC 1 cut(s) 393
FokI GGATG 2 cut(s) 526, 545
FspBI CTAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 148, 330
HapII CCGG 1 cut(s) 444
Hin1II CATG 2 cut(s) 51, 78
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 8 cut(s) 19, 25, 31, 91, 177, 419, 452, 458
HpaII CCGG 1 cut(s) 444
Hpy166II GTNNAC 4 cut(s) 81, 301, 394, 479
Hpy188I TCNGA 9 cut(s) 24, 30, 115, 378, 418, 424, 451, 457, 463
Hpy8I GTNNAC 4 cut(s) 81, 301, 394, 479
HpyAV CCTTC 3 cut(s) 200, 201, 341
HpyCH4III ACNGT 4 cut(s) 85, 111, 154, 361
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 2 cut(s) 51, 78
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 209, 452
LpnPI CCDG 7 cut(s) 22, 227, 238, 278, 305, 457, 551
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 4 cut(s) 58, 85, 154, 568
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 292
MflI RGATCY 1 cut(s) 244
MluCI AATT 5 cut(s) 36, 96, 129, 534, 538
MlyI GAGTC 7 cut(s) 13, 19, 25, 100, 186, 446, 452
MmeI TCCRAC 5 cut(s) 47, 53, 462, 474, 480
MnlI CCTC 4 cut(s) 129, 132, 258, 504
MseI TTAA 4 cut(s) 356, 432, 492, 537
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 51, 78
NlaIV GGNNCC 3 cut(s) 6, 246, 448
NmuCI GTSAC 1 cut(s) 154
NspV TTCGAA 1 cut(s) 127
PfeI GAWTC 1 cut(s) 419
PleI GAGTC 7 cut(s) 13, 19, 25, 99, 185, 446, 452
PpsI GAGTC 7 cut(s) 13, 19, 25, 99, 185, 446, 452
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 3 cut(s) 6, 246, 448
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SaqAI TTAA 4 cut(s) 356, 432, 492, 537
Sau3AI GATC 1 cut(s) 244
SchI GAGTC 7 cut(s) 13, 19, 25, 100, 186, 446, 452
ScrFI CCNGG 1 cut(s) 293
SetI ASST 4 cut(s) 325, 376, 406, 570
SfcI CTRYAG 1 cut(s) 318
SfuI TTCGAA 1 cut(s) 127
Sse9I AATT 5 cut(s) 36, 96, 129, 534, 538
SsiI CCGC 1 cut(s) 389
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 4 cut(s) 85, 111, 154, 361
TaiI ACGT 1 cut(s) 406
TaqI TCGA 3 cut(s) 127, 273, 334
TasI AATT 5 cut(s) 36, 96, 129, 534, 538
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 4 cut(s) 356, 432, 492, 537
Tru9I TTAA 4 cut(s) 356, 432, 492, 537
TscAI CASTG 2 cut(s) 246, 303
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 212
TspGWI ACGGA 2 cut(s) 177, 587
TspRI CASTG 2 cut(s) 246, 303
VspI ATTAAT 1 cut(s) 537
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.