Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8414241.1

Orthogroup ID

OG0009278

Physical Location & Seq

Genomic Coordinates Forward (+)

331 .. 1362

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8414241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 674 bp

atggatgctctaattaaagccctgccagaatcatctgatgatgacactcttacagagctcaaggagtttgtaccctttagagctgaaacagattcagaacagcttgccattttgggagttgcatttaccattgtggatgaacaactacctaatgctgtaatgaccctttggaagcagcagagtgaaagtgtggaaccaaaaagtggacctgctgaaaatgtcatgtctagtccaagcacttctacagagttcaaggattggagacgccatcttcagcattcgtttgacaagctaagagaccatttctgccggcaatatgtcttgagcttcatctattcgagagaagggaaaacacgattggatgcacaaatatatctaagtgagaacggggatgatttgtattgggactctgaccctttgccttcgcttccatttcaggcattatttgcaaagctgcagcaattagcaactgtggcaggagatgtattacttggaaaagagaaaatacagaaaattttacttgctaggctaacggagactgttctaatgtggttgtctgatgaacaagagttttggagtgtctttgagaatgatacatgtcctcttcagccatttgggttgcagcagctgattcttgacatgcacttcactgtggaaattgcacgttttgcggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008104 GO:0008150 GO:0009856 GO:0009875 GO:0009987 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0031503 GO:0032501 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0034629 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051601 GO:0051640 GO:0051641 GO:0051704 GO:0060321 GO:0065003 GO:0070727 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo84_C

Protein Analysis

225

Amino Acids

25.74

Weight (kDa)

4.56

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10180
fragaria_vesca	FvH4_3g12130 FvH4_3g12130 FvH4_3g12130
malus_domestica	MD05G1254700.v1.1 MD10G1234800.v1.1
prunus_persica	Prupe.4G110000_v2.0.a1 Prupe.4G110000_v2.0.a1
pyrus_communis	pycom05g23270 pycom10g19660
rosa_chinensis	RchiOBHm_Chr5g0019861
rosa_laevigata	RLG00000032479
rosa_multiflora	Rmu_co8414241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058310
rosa_rugosa	Rorug05G0054300 Rorug05G0054400 Rorug05G0054500.1
rosa_samantha	Rh5AG144700 Rh5BG143800 Rh5CG155500 Rh5DG143600
rosa_wichuraiana	Rw5G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	2 cut(s)	257, 590
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	7 cut(s)	58, 83, 103, 292, 327, 454, 628
AluI	AGCT	7 cut(s)	58, 83, 103, 292, 327, 454, 628
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	256, 291, 530
AlwNI	CAGNNNCTG	1 cut(s)	628
ApeKI	GCWGC	5 cut(s)	175, 454, 457, 622, 625
ApoI	RAATTY	1 cut(s)	513
AspS9I	GGNCC	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	5 cut(s)	187, 441, 469, 634, 637
BccI	CCATC	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	256, 291, 530
BfaI	CTAG	2 cut(s)	228, 525
BfmI	CTRYAG	2 cut(s)	243, 455
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	5 cut(s)	176, 455, 458, 623, 626
BlsI	GCNGC	5 cut(s)	177, 456, 459, 624, 627
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	1 cut(s)	352
BpuEI	CTTGAG	2 cut(s)	44, 343
BsaHI	GRCGYC	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	309
BseGI	GGATG	4 cut(s)	10, 142, 367, 397
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseXI	GCAGC	5 cut(s)	187, 441, 469, 634, 637
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	3 cut(s)	256, 291, 530
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	671
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	309
BssAI	RCCGGY	1 cut(s)	309
BssNI	GRCGYC	1 cut(s)	265
Bst4CI	ACNGT	3 cut(s)	472, 541, 652
Bst6I	CTCTTC	1 cut(s)	609
BstACI	GRCGYC	1 cut(s)	265
BstAPI	GCANNNNNTGC	2 cut(s)	446, 668
BstC8I	GCNNGC	2 cut(s)	105, 311
BstDEI	CTNAG	2 cut(s)	293, 377
BstF5I	GGATG	4 cut(s)	10, 142, 367, 397
BstMAI	GTCTC	3 cut(s)	256, 291, 530
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 473, 668
BstNSI	RCATGY	2 cut(s)	600, 643
BstSFI	CTRYAG	2 cut(s)	243, 455
BstV1I	GCAGC	5 cut(s)	187, 441, 469, 634, 637
BtsCI	GGATG	4 cut(s)	10, 142, 367, 397
BtsIMutI	CAGTG	1 cut(s)	648
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	105, 311
CaiI	CAGNNNCTG	1 cut(s)	628
Cfr10I	RCCGGY	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	3 cut(s)	223, 597, 640
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	2 cut(s)	293, 377
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	2 cut(s)	257, 590
EcoICRI	GAGCTC	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	3 cut(s)	226, 600, 643
FaiI	YATR	5 cut(s)	224, 318, 373, 598, 641
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	222, 596, 639
FauI	CCCGC	1 cut(s)	664
Fnu4HI	GCNGC	5 cut(s)	176, 455, 458, 623, 626
FokI	GGATG	4 cut(s)	17, 149, 374, 404
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	5 cut(s)	176, 455, 458, 623, 626
FspBI	CTAG	2 cut(s)	228, 525
GluI	GCNGC	5 cut(s)	176, 455, 458, 623, 626
HapII	CCGG	1 cut(s)	310
HgaI	GACGC	1 cut(s)	273
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	226, 600, 643
HinfI	GANTC	4 cut(s)	29, 92, 407, 631
HpaII	CCGG	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	4 cut(s)	37, 97, 412, 559
Hpy188III	TCNNGA	3 cut(s)	322, 339, 635
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	338, 432
HpyCH4III	ACNGT	3 cut(s)	472, 541, 652
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	7 cut(s)	122, 365, 449, 457, 622, 643, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 473, 668
HpyF3I	CTNAG	2 cut(s)	293, 377
HpySE526I	ACGT	1 cut(s)	664
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	226, 600, 643
KroI	GCCGGC	1 cut(s)	309
KroNI	GCCGGC	1 cut(s)	311
LpnPI	CCDG	6 cut(s)	35, 39, 222, 323, 422, 462
Lsp1109I	GCAGC	5 cut(s)	187, 441, 469, 634, 637
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	228, 525
MaeII	ACGT	1 cut(s)	664
MboII	GAAGA	2 cut(s)	263, 596
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	4 cut(s)	12, 461, 513, 657
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	1 cut(s)	612
MroNI	GCCGGC	1 cut(s)	309
MseI	TTAA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	277
MwoI	GCNNNNNNNGC	3 cut(s)	446, 473, 668
NaeI	GCCGGC	1 cut(s)	311
NgoMIV	GCCGGC	1 cut(s)	309
NlaIII	CATG	3 cut(s)	226, 600, 643
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	2 cut(s)	600, 643
PciI	ACATGT	1 cut(s)	596
PctI	GAATGC	1 cut(s)	277
PdiI	GCCGGC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	29, 92, 631
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	177, 456, 459, 624, 627
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PscI	ACATGT	1 cut(s)	596
Psp124BI	GAGCTC	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	5 cut(s)	176, 455, 458, 623, 626
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	2 cut(s)	243, 455
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	59, 322
SmoI	CTYRAG	2 cut(s)	59, 322
Sse9I	AATT	4 cut(s)	12, 461, 513, 657
SsiI	CCGC	1 cut(s)	671
SspMI	CTAG	2 cut(s)	228, 525
SstI	GAGCTC	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	472, 541, 652
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	1 cut(s)	338
TasI	AATT	4 cut(s)	12, 461, 513, 657
TfiI	GAWTC	3 cut(s)	29, 92, 631
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	655
TseI	GCWGC	5 cut(s)	175, 454, 457, 622, 625
TspDTI	ATGAA	3 cut(s)	153, 319, 576
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	655
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	2 cut(s)	600, 643
XspI	CTAG	2 cut(s)	228, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.