Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009278

Physical Location & Seq

Genomic Coordinates Forward (+)

4777322 .. 4777675

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0054400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAACAGAAAGAATAGAGTTGATAATTTCAAGAATGCCTCAGGATTAAAACCTGTGAAAACGGGTTTAAAAGCTGGGGAGGCTGGTTATGATCCATTTTCGAGGAGATGGACCAGGTCAAGAAATTACTATGTTTCAGAGCCTGGTGAACAAAAAGATGATGCCGAGGAAACTGCTGTTGCTGCTGAGGCATTGGCAGAGGTGGAAACTAATGGAGCAGAAGGGATAGTAGCAGTACGAGCTGGCTTGGTAGCCACAGCGGCAGCTCTGGAAGCTGCAGCTGGTGCTGGGAAGTTGATCGATACGATGGCTTCTGTTGATCAAGGAACATCGTCAAATCTCGCACAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008104 GO:0008150 GO:0009856 GO:0009875 GO:0009987 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0031503 GO:0032501 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0034629 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051601 GO:0051640 GO:0051641 GO:0051704 GO:0060321 GO:0065003 GO:0070727 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo84_C

Protein Analysis

117

Amino Acids

12.26

Weight (kDa)

5.18

Isoelectric Point (pI)

23.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10180
fragaria_vesca	FvH4_3g12130 FvH4_3g12130 FvH4_3g12130
malus_domestica	MD05G1254700.v1.1 MD10G1234800.v1.1
prunus_persica	Prupe.4G110000_v2.0.a1 Prupe.4G110000_v2.0.a1
pyrus_communis	pycom05g23270 pycom10g19660
rosa_chinensis	RchiOBHm_Chr5g0019861
rosa_laevigata	RLG00000032479
rosa_multiflora	Rmu_co8414241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058310
rosa_rugosa	Rorug05G0054300 Rorug05G0054400 Rorug05G0054500.1
rosa_samantha	Rh5AG144700 Rh5BG143800 Rh5CG155500 Rh5DG143600
rosa_wichuraiana	Rw5G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	113, 142
AluBI	AGCT	5 cut(s)	74, 242, 266, 275, 281
AluI	AGCT	5 cut(s)	74, 242, 266, 275, 281
AlwI	GGATC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	143
ApeKI	GCWGC	4 cut(s)	182, 263, 275, 278
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	111
AxyI	CCTNAGG	1 cut(s)	40
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	169, 262, 275, 290
BccI	CCATC	2 cut(s)	102, 301
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	2 cut(s)	115, 144
BclI	TGATCA	1 cut(s)	319
BfmI	CTRYAG	1 cut(s)	276
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	5 cut(s)	183, 261, 264, 276, 279
BlsI	GCNGC	5 cut(s)	184, 262, 265, 277, 280
Bme1390I	CCNGG	2 cut(s)	115, 144
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	115, 144
BmsI	GCATC	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	165
Bse21I	CCTNAGG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	115, 144
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	54, 177
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	4 cut(s)	169, 262, 275, 290
BseYI	CCCAGC	2 cut(s)	74, 287
BshVI	ATCGAT	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	91, 297, 319
BspACI	CCGC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	53, 178
BspDI	ATCGAT	1 cut(s)	300
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	91, 297, 319
Bst2UI	CCWGG	2 cut(s)	115, 144
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	2 cut(s)	40, 186
BstKTI	GATC	3 cut(s)	94, 300, 322
BstMBI	GATC	3 cut(s)	91, 297, 319
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 182, 188, 239, 260, 272, 284
BstNI	CCWGG	2 cut(s)	115, 144
BstSCI	CCNGG	2 cut(s)	113, 142
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	4 cut(s)	169, 262, 275, 290
Bsu15I	ATCGAT	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	40
BsuTUI	ATCGAT	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	300
CsiI	ACCWGGT	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	236
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	40, 186
DpnI	GATC	3 cut(s)	93, 299, 321
DpnII	GATC	3 cut(s)	91, 297, 319
DraI	TTTAAA	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	113, 142
FaiI	YATR	2 cut(s)	90, 132
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	5 cut(s)	183, 261, 264, 276, 279
Fsp4HI	GCNGC	5 cut(s)	183, 261, 264, 276, 279
GluI	GCNGC	5 cut(s)	183, 261, 264, 276, 279
GsaI	CCCAGC	2 cut(s)	78, 291
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	4 cut(s)	31, 42, 120, 269
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 182, 188, 239, 260, 272, 284
HpyF3I	CTNAG	2 cut(s)	40, 186
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	91, 297, 319
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	4 cut(s)	169, 262, 275, 290
LweI	GCATC	1 cut(s)	151
MabI	ACCWGGT	1 cut(s)	113
MalI	GATC	3 cut(s)	93, 299, 321
MboI	GATC	3 cut(s)	91, 297, 319
MluCI	AATT	3 cut(s)	25, 124, 347
MnlI	CCTC	6 cut(s)	49, 73, 96, 160, 181, 193
MseI	TTAA	2 cut(s)	47, 68
MspA1I	CMGCKG	2 cut(s)	260, 281
MspR9I	CCNGG	2 cut(s)	115, 144
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	2 cut(s)	115, 144
MwoI	GCNNNNNNNGC	7 cut(s)	80, 182, 188, 239, 260, 272, 284
NdeII	GATC	3 cut(s)	91, 297, 319
NmeAIII	GCCGAG	1 cut(s)	190
PctI	GAATGC	1 cut(s)	40
PflFI	GACNNNGTC	1 cut(s)	115
PkrI	GCNGC	5 cut(s)	184, 262, 265, 277, 280
Psp6I	CCWGG	2 cut(s)	113, 142
PspFI	CCCAGC	2 cut(s)	74, 287
PspGI	CCWGG	2 cut(s)	113, 142
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	143
PsyI	GACNNNGTC	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	47, 68
SatI	GCNGC	5 cut(s)	183, 261, 264, 276, 279
Sau3AI	GATC	3 cut(s)	91, 297, 319
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	115, 144
SetI	ASST	8 cut(s)	55, 76, 119, 204, 244, 268, 277, 283
SexAI	ACCWGGT	1 cut(s)	113
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	111
Sse9I	AATT	3 cut(s)	25, 124, 347
SsiI	CCGC	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	113, 142
TaqI	TCGA	2 cut(s)	101, 300
TasI	AATT	3 cut(s)	25, 124, 347
TauI	GCSGC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	47, 68
Tru9I	TTAA	2 cut(s)	47, 68
TseI	GCWGC	4 cut(s)	182, 263, 275, 278
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.