pycom05g28780

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0003690
Physical Location & Seq
Forward (+)
29375976 .. 29378910
2935 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2067 bp
ATGATCGATCAGAACGGCCAGAGAACCTCTGTAGACCTACGCGATGATGGCAACAGTCATCTGTGTAATAGTGAGATTATGGATGCTAAAGCCGCCAGCTCATGTAGAGTGGGCGGGGAAGAGAAGGCTGATGCCATCCCGATGAGGGATAATTTAGGTAAGGAGGTTAGAGGTGTTGTGAATCCAGAGGATGGGATGAAACAAGTGGACATGCGGCAGAGGAATGATAGAAAGCAAATGGATTCAAGGTCGGGTGCTTTTGAGATATGGACCACAATTACGTCTCCTGCGGTTGAGACTAGTGATCGAAACAAGCACCCAGCTATTATATGTGATTTCCATGCGAAGGGTTGGTGCATTAGAGGTAGTTCTTGTAAATTCGTCCATGTAAAAGATAATCCCATTAGTTCCCAACCACAACCTGAGGGAGATATTGCTAATTCTACTAGAGAAGTCCAGCTTGATGAAGGCCTAAGAGACATTACTGAGAGATCAAGGTCACCTGGTTTTCGTGAACCGCTGGCCTCTTCAAGTGGAAGTGATTTTGCATTTTCTTCACATCTCACATCTGAAAAGATCCGATTTTTGGAACACATAGGAAGGCAGCACCAGTTTCATGAAAAGCGCAAGTTTCCAACAGTTATAGAGGAGGAATCAAATGTGGGCGAGTCCACTGTTGCAAAGAAATTGCATTCATCCAAAGATGATCCAGGCTTTCTCTCTTCGCTTAAGGATATAGAAAGAGATGATCAGACACGAAATTGGCTTTCTGATAAAGATAAATCTATATTTATGAGCGGTTTGCATCCTGAACCTGGATTTTTTTCAAATGGATCTATTTCATCATCAGGCAAGTACTTTATAAGGAAGACCTCTTCACATACGAGCGGTATGGGGGAACCAGATGGAATTTGGAGCCAGCATGTGCACCGTGTTCATAGTTCCCCACTCGTGAACCTTGCTTTAAATTCAAGCTCAAGAAATCTTTCAACTACTGGCTTGTTTCCAACTAGCCGTATTTCATCTTGGACTGGATTTTCGTTGCCTTCTAGTTCTTCCAATCTCGATGCAAGTCCTCATGATACTCTTAAGCTTTTTGATCGAAGTAGGGATTACCGGTCTTGTACTAGATTACCTCCCTTGCTGAAAAGCTCTTCTCCCTTCTCTAGTTCTGAGTTGAAAAATTTTCCTGTGACCAGCGTGTCATTGTGCTCAGCTGAAATTAAAACAAAAATTTCTTCAAATGACTGGGAGCCATCTGTGCCTTTCTGGCCATCTTTTATTCTTCCTCATGCATTTCTATCATCTTCAGGAAGGCAGTATGACCCTCTTCGGGACAGCATTGAGTTACCAAAGTTAGCAAACATCTCCGGTGAAACTTCTTTCTATCCTGAAGGGGCAACCGCTGTGAATAAATTGCATCAGCAAATACATGTTGAATCTGCTAGTGGGACCACACGGACAGCTTGTGAGGGTGATACAAACTCTATGTCTTCACATAATACATATCATGAGAAGGTATTAGATAATAGCTGCTATATACGTGACCATAATTCACCTGGCACTGAAGCAGAGACATTGGGGACTTCTGCTGTATGCCAAAAAGGAACCATGACTGGAGAAGAAAATCCCTTGGGCCCGTCTCATCTCAAAGGTAGTACAAAACAAAACAAAGCCAGTACGGCGTATGGTGATTCTGGACATGAAAGTGACTGTTCTAGACACCAAGAAGACATAAAAGTAGATAGATTTAGAGATAAGAATGAAGTGGATGGTGAACATTTGACAGACGGGAATGTACAGCAAGAATCAAAAGCTGTGAGGAATTTCCGTGCAGCTCTTGTAGATTTAGTAAAAGATATGTTAAAACCAAAATGGCGTGATGGTAGTCTCAGCAAGGATGCACATAACATGATAGTCAAGAGAGCAGTAGAGAAGATTATCAGTGCTTTTCAGCCCCATCAAATCCCATCAACCATAGAAACAGTTATGCAATACTTGTCTGTATGCCGTCCAAAAATCTCAAAGCTTGTTGAGGGATATGTTGTAAAATATGGAAAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010219 GO:0010220 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0065007 GO:0080134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

689

Amino Acids

76.25

Weight (kDa)

6.73

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 110 - 130 8.6e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 863
AasI GACNNNNNNGTC 1 cut(s) 1201
AccB7I CCANNNNNTGG 1 cut(s) 191
AccBSI CCGCTC 2 cut(s) 798, 888
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 42
AciI CCGC 8 cut(s) 93, 114, 214, 290, 518, 798, 888, 1404
AclWI GGATC 3 cut(s) 571, 701, 841
AcoI YGGCCR 2 cut(s) 16, 1271
AcsI RAATTY 6 cut(s) 377, 909, 967, 1183, 1233, 1825
AcuI CTGAAG 3 cut(s) 1293, 1413, 1587
AfaI GTAC 5 cut(s) 857, 1126, 1660, 1681, 1800
AfiI CCNNNNNNNGG 6 cut(s) 145, 191, 346, 586, 815, 1333
AflII CTTAAG 2 cut(s) 728, 1088
AflIII ACRYGT 1 cut(s) 1432
AgeI ACCGGT 1 cut(s) 1116
AgsI TTSAA 8 cut(s) 246, 531, 828, 972, 990, 1180, 1242, 1439
AhlI ACTAGT 1 cut(s) 299
AjnI CCWGG 4 cut(s) 502, 709, 814, 1558
Alw21I GWGCWC 2 cut(s) 930, 1214
Alw26I GTCTC 6 cut(s) 288, 290, 471, 1568, 1647, 1895
Alw44I GTGCAC 1 cut(s) 926
AlwI GGATC 3 cut(s) 571, 701, 841
AoxI GGCC 5 cut(s) 16, 469, 522, 1271, 1636
ApaI GGGCCC 1 cut(s) 1640
ApaLI GTGCAC 1 cut(s) 926
ApeKI GCWGC 3 cut(s) 604, 1533, 1835
ApoI RAATTY 6 cut(s) 377, 909, 967, 1183, 1233, 1825
ArsI GACNNNNNNTTYG 4 cut(s) 1021, 1053, 1475, 1507
AsiGI ACCGGT 1 cut(s) 1116
Asp700I GAANNNNTTC 1 cut(s) 985
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 4 cut(s) 270, 1452, 1636, 1637
AsuHPI GGTGA 6 cut(s) 492, 1385, 1487, 1548, 1703, 1787
AvaII GGWCC 2 cut(s) 270, 1452
AxyI CCTNAGG 1 cut(s) 423
BaeGI GKGCMC 2 cut(s) 930, 1640
BalI TGGCCA 1 cut(s) 1273
BanII GRGCYC 1 cut(s) 1640
BauI CACGAG 1 cut(s) 950
BbsI GAAGAC 3 cut(s) 875, 1485, 1737
Bbv12I GWGCWC 2 cut(s) 930, 1214
BbvI GCAGC 3 cut(s) 616, 1520, 1847
BceAI ACGGC 4 cut(s) 31, 999, 1698, 1995
BciT130I CCWGG 4 cut(s) 504, 711, 816, 1560
BclI TGATCA 1 cut(s) 748
BcoDI GTCTC 6 cut(s) 288, 290, 471, 1568, 1647, 1895
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 8 cut(s) 300, 447, 1011, 1050, 1128, 1167, 1446, 1719
BfmI CTRYAG 1 cut(s) 30
BfrI CTTAAG 2 cut(s) 728, 1088
BglI GCCNNNNNGGC 2 cut(s) 1270, 1682
BisI GCNGC 5 cut(s) 93, 215, 605, 1534, 1836
BlpI GCTNAGC 1 cut(s) 1213
BlsI GCNGC 5 cut(s) 94, 216, 606, 1535, 1837
BmcAI AGTACT 1 cut(s) 857
Bme1390I CCNGG 4 cut(s) 504, 711, 816, 1560
Bme18I GGWCC 2 cut(s) 270, 1452
BmgT120I GGNCC 4 cut(s) 270, 1452, 1636, 1637
BmiI GGNNCC 6 cut(s) 900, 917, 1254, 1453, 1609, 1638
BmrFI CCNGG 4 cut(s) 504, 711, 816, 1560
BmrI ACTGGG 1 cut(s) 1258
BmsI GCATC 6 cut(s) 73, 121, 814, 1057, 1429, 1891
BmuI ACTGGG 1 cut(s) 1258
BpiI GAAGAC 3 cut(s) 875, 1485, 1737
BpmI CTGGAG 1 cut(s) 1638
Bpu1102I GCTNAGC 1 cut(s) 1213
BpuEI CTTGAG 1 cut(s) 961
Bsa29I ATCGAT 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 1544
BsaJI CCNNGG 1 cut(s) 1632
BsaWI WCCGGW 2 cut(s) 1116, 1370
Bsc4I CCNNNNNNNGG 6 cut(s) 145, 191, 346, 586, 815, 1333
Bse118I RCCGGY 1 cut(s) 1116
Bse1I ACTGG 6 cut(s) 610, 1000, 1036, 1253, 1621, 1677
Bse21I CCTNAGG 1 cut(s) 423
BseBI CCWGG 4 cut(s) 504, 711, 816, 1560
BseCI ATCGAT 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 1632
BseGI GGATG 8 cut(s) 88, 135, 196, 201, 695, 805, 1777, 1906
BseLI CCNNNNNNNGG 6 cut(s) 145, 191, 346, 586, 815, 1333
BseMII CTCAG 5 cut(s) 414, 477, 1164, 1227, 1906
BseNI ACTGG 6 cut(s) 610, 1000, 1036, 1253, 1621, 1677
BseRI GAGGAG 1 cut(s) 662
BseSI GKGCMC 2 cut(s) 930, 1640
BseXI GCAGC 3 cut(s) 616, 1520, 1847
BseYI CCCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 1854
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 5 cut(s) 18, 471, 524, 1273, 1638
BshTI ACCGGT 1 cut(s) 1116
BshVI ATCGAT 1 cut(s) 6
BsiHKAI GWGCWC 2 cut(s) 930, 1214
BsiSI CCGG 2 cut(s) 1117, 1371
BslFI GGGAC 3 cut(s) 1349, 1465, 1597
BslI CCNNNNNNNGG 6 cut(s) 145, 191, 346, 586, 815, 1333
BsmAI GTCTC 6 cut(s) 288, 290, 471, 1568, 1647, 1895
BsmBI CGTCTC 2 cut(s) 288, 1647
BsmFI GGGAC 3 cut(s) 1349, 1465, 1597
BsmI GAATGC 1 cut(s) 691
BsnI GGCC 5 cut(s) 18, 471, 524, 1273, 1638
Bsp120I GGGCCC 1 cut(s) 1636
Bsp1286I GDGCHC 3 cut(s) 930, 1214, 1640
Bsp1407I TGTACA 1 cut(s) 1798
Bsp143I GATC 9 cut(s) 3, 7, 304, 491, 576, 706, 748, 833, 1099
Bsp1720I GCTNAGC 1 cut(s) 1213
BspACI CCGC 8 cut(s) 93, 114, 214, 290, 518, 798, 888, 1404
BspANI GGCC 5 cut(s) 18, 471, 524, 1273, 1638
BspCNI CTCAG 5 cut(s) 415, 478, 1165, 1226, 1905
BspDI ATCGAT 1 cut(s) 6
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 3 cut(s) 616, 1078, 1510
BspLI GGNNCC 6 cut(s) 900, 917, 1254, 1453, 1609, 1638
BspPI GGATC 3 cut(s) 571, 701, 841
BspQI GCTCTTC 1 cut(s) 1159
BspTI CTTAAG 2 cut(s) 728, 1088
BsrBI CCGCTC 2 cut(s) 798, 888
BsrFI RCCGGY 1 cut(s) 1116
BsrGI TGTACA 1 cut(s) 1798
BsrI ACTGG 6 cut(s) 610, 1000, 1036, 1253, 1621, 1677
BssAI RCCGGY 1 cut(s) 1116
BssECI CCNNGG 1 cut(s) 1632
BssMI GATC 9 cut(s) 3, 7, 304, 491, 576, 706, 748, 833, 1099
BssSI CACGAG 1 cut(s) 950
BssT1I CCWWGG 1 cut(s) 1632
Bst2BI CACGAG 1 cut(s) 950
Bst2UI CCWGG 4 cut(s) 504, 711, 816, 1560
Bst4CI ACNGT 6 cut(s) 56, 640, 676, 932, 1715, 1987
Bst6I CTCTTC 6 cut(s) 114, 532, 727, 880, 1159, 1335
BstAFI CTTAAG 2 cut(s) 728, 1088
BstAUI TGTACA 1 cut(s) 1798
BstBAI YACGTR 1 cut(s) 1544
BstC8I GCNNGC 3 cut(s) 97, 522, 920
BstDEI CTNAG 6 cut(s) 423, 473, 486, 1173, 1213, 1892
BstEII GGTNACC 1 cut(s) 498
BstF5I GGATG 8 cut(s) 88, 135, 196, 201, 695, 805, 1777, 1906
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 9 cut(s) 6, 10, 307, 494, 579, 709, 751, 836, 1102
BstMAI GTCTC 6 cut(s) 288, 290, 471, 1568, 1647, 1895
BstMBI GATC 9 cut(s) 3, 7, 304, 491, 576, 706, 748, 833, 1099
BstMWI GCNNNNNNNGC 5 cut(s) 48, 92, 1261, 1270, 1682
BstNI CCWGG 4 cut(s) 504, 711, 816, 1560
BstNSI RCATGY 3 cut(s) 214, 926, 1436
BstPI GGTNACC 1 cut(s) 498
BstSCI CCNGG 4 cut(s) 502, 709, 814, 1558
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 2 cut(s) 930, 1640
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 616, 1520, 1847
BstV2I GAAGAC 3 cut(s) 875, 1485, 1737
BstX2I RGATCY 2 cut(s) 576, 833
BstYI RGATCY 2 cut(s) 576, 833
Bsu15I ATCGAT 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 5 cut(s) 18, 471, 524, 1273, 1638
BsuTUI ATCGAT 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 8 cut(s) 88, 135, 196, 201, 695, 805, 1777, 1906
BtsIMutI CAGTG 3 cut(s) 672, 1563, 1951
Cac8I GCNNGC 3 cut(s) 97, 522, 920
CciI TCATGA 3 cut(s) 616, 1078, 1510
CfoI GCGC 1 cut(s) 627
Cfr10I RCCGGY 1 cut(s) 1116
Cfr13I GGNCC 4 cut(s) 270, 1452, 1636, 1637
ClaI ATCGAT 1 cut(s) 6
CsiI ACCWGGT 1 cut(s) 502
Csp6I GTAC 5 cut(s) 856, 1125, 1659, 1680, 1799
CspAI ACCGGT 1 cut(s) 1116
CviQI GTAC 5 cut(s) 856, 1125, 1659, 1680, 1799
DdeI CTNAG 6 cut(s) 423, 473, 486, 1173, 1213, 1892
DpnI GATC 9 cut(s) 5, 9, 306, 493, 578, 708, 750, 835, 1101
DpnII GATC 9 cut(s) 3, 7, 304, 491, 576, 706, 748, 833, 1099
DraI TTTAAA 1 cut(s) 966
DrdI GACNNNNNNGTC 1 cut(s) 1201
DseDI GACNNNNNNGTC 1 cut(s) 1201
EaeI YGGCCR 2 cut(s) 16, 1271
Eam1104I CTCTTC 6 cut(s) 114, 532, 727, 880, 1159, 1335
EarI CTCTTC 6 cut(s) 114, 532, 727, 880, 1159, 1335
Eco130I CCWWGG 1 cut(s) 1632
Eco147I AGGCCT 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 1640
Eco47I GGWCC 2 cut(s) 270, 1452
Eco57I CTGAAG 3 cut(s) 1293, 1413, 1587
Eco81I CCTNAGG 1 cut(s) 423
Eco91I GGTNACC 1 cut(s) 498
EcoO65I GGTNACC 1 cut(s) 498
EcoRII CCWGG 4 cut(s) 502, 709, 814, 1558
EcoT14I CCWWGG 1 cut(s) 1632
EcoT22I ATGCAT 1 cut(s) 1297
EcoT38I GRGCYC 1 cut(s) 1640
ErhI CCWWGG 1 cut(s) 1632
Esp3I CGTCTC 2 cut(s) 288, 1647
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 3 cut(s) 1349, 1465, 1597
FauI CCCGC 1 cut(s) 107
FbaI TGATCA 1 cut(s) 748
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 5 cut(s) 93, 215, 605, 1534, 1836
FokI GGATG 8 cut(s) 95, 122, 203, 208, 682, 792, 1784, 1913
FriOI GRGCYC 1 cut(s) 1640
Fsp4HI GCNGC 5 cut(s) 93, 215, 605, 1534, 1836
FspBI CTAG 8 cut(s) 300, 447, 1011, 1050, 1128, 1167, 1446, 1719
GlaI GCGC 1 cut(s) 626
GluI GCNGC 5 cut(s) 93, 215, 605, 1534, 1836
GsaI CCCAGC 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 1638
HaeIII GGCC 5 cut(s) 18, 471, 524, 1273, 1638
HapII CCGG 2 cut(s) 1117, 1371
HhaI GCGC 1 cut(s) 627
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HindIII AAGCTT 2 cut(s) 1091, 2027
HinfI GANTC 7 cut(s) 181, 242, 653, 668, 1439, 1694, 1808
HpaII CCGG 2 cut(s) 1117, 1371
HphI GGTGA 6 cut(s) 492, 1385, 1487, 1548, 1703, 1787
Hpy166II GTNNAC 7 cut(s) 34, 208, 515, 672, 928, 955, 1778
Hpy188I TCNGA 6 cut(s) 12, 571, 581, 753, 772, 1174
Hpy8I GTNNAC 7 cut(s) 34, 208, 515, 672, 928, 955, 1778
HpyAV CCTTC 9 cut(s) 118, 340, 461, 594, 1056, 1171, 1308, 1388, 1510
HpyCH4III ACNGT 6 cut(s) 56, 640, 676, 932, 1715, 1987
HpyCH4IV ACGT 2 cut(s) 281, 1543
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 92, 1261, 1270, 1682
HpyF3I CTNAG 6 cut(s) 423, 473, 486, 1173, 1213, 1892
HpySE526I ACGT 2 cut(s) 281, 1543
HspAI GCGC 1 cut(s) 625
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 9 cut(s) 3, 7, 304, 491, 576, 706, 748, 833, 1099
LguI GCTCTTC 1 cut(s) 1159
LmnI GCTCC 2 cut(s) 915, 1252
Lsp1109I GCAGC 3 cut(s) 616, 1520, 1847
LweI GCATC 6 cut(s) 73, 121, 814, 1057, 1429, 1891
MabI ACCWGGT 1 cut(s) 502
MaeI CTAG 8 cut(s) 300, 447, 1011, 1050, 1128, 1167, 1446, 1719
MaeII ACGT 2 cut(s) 281, 1543
MaeIII GTNAC 5 cut(s) 498, 1192, 1347, 1544, 1709
MalI GATC 9 cut(s) 5, 9, 306, 493, 578, 708, 750, 835, 1101
MbiI CCGCTC 2 cut(s) 798, 888
MboI GATC 9 cut(s) 3, 7, 304, 491, 576, 706, 748, 833, 1099
MflI RGATCY 2 cut(s) 576, 833
MhlI GDGCHC 3 cut(s) 930, 1214, 1640
MlsI TGGCCA 1 cut(s) 1273
MluNI TGGCCA 1 cut(s) 1273
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 2 cut(s) 659, 1031
Mox20I TGGCCA 1 cut(s) 1273
Mph1103I ATGCAT 1 cut(s) 1297
MroXI GAANNNNTTC 1 cut(s) 985
MscI TGGCCA 1 cut(s) 1273
MseI TTAA 5 cut(s) 729, 965, 1089, 1224, 1865
MslI CAYNNNNRTG 2 cut(s) 140, 1707
Msp20I TGGCCA 1 cut(s) 1273
MspA1I CMGCKG 3 cut(s) 520, 1217, 1406
MspCI CTTAAG 2 cut(s) 728, 1088
MspI CCGG 2 cut(s) 1117, 1371
MspR9I CCNGG 4 cut(s) 504, 711, 816, 1560
Mva1269I GAATGC 1 cut(s) 691
MvaI CCWGG 4 cut(s) 504, 711, 816, 1560
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 5 cut(s) 48, 92, 1261, 1270, 1682
NdeII GATC 9 cut(s) 3, 7, 304, 491, 576, 706, 748, 833, 1099
NlaIV GGNNCC 6 cut(s) 900, 917, 1254, 1453, 1609, 1638
NmuCI GTSAC 4 cut(s) 498, 1192, 1544, 1709
NsiI ATGCAT 1 cut(s) 1297
NspI RCATGY 3 cut(s) 214, 926, 1436
PagI TCATGA 3 cut(s) 616, 1078, 1510
PceI AGGCCT 1 cut(s) 471
PciI ACATGT 1 cut(s) 1432
PciSI GCTCTTC 1 cut(s) 1159
PctI GAATGC 1 cut(s) 691
PdmI GAANNNNTTC 1 cut(s) 985
PfeI GAWTC 6 cut(s) 181, 242, 653, 1439, 1694, 1808
PflMI CCANNNNNTGG 1 cut(s) 191
PinAI ACCGGT 1 cut(s) 1116
PkrI GCNGC 5 cut(s) 94, 216, 606, 1535, 1837
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
Ppu21I YACGTR 1 cut(s) 1544
PscI ACATGT 1 cut(s) 1432
PsiI TTATAA 1 cut(s) 863
Psp6I CCWGG 4 cut(s) 502, 709, 814, 1558
PspEI GGTNACC 1 cut(s) 498
PspFI CCCAGC 1 cut(s) 319
PspGI CCWGG 4 cut(s) 502, 709, 814, 1558
PspN4I GGNNCC 6 cut(s) 900, 917, 1254, 1453, 1609, 1638
PspOMI GGGCCC 1 cut(s) 1636
PspPI GGNCC 4 cut(s) 270, 1452, 1636, 1637
PsuI RGATCY 2 cut(s) 576, 833
PvuII CAGCTG 1 cut(s) 1217
RsaI GTAC 5 cut(s) 857, 1126, 1660, 1681, 1800
RsaNI GTAC 5 cut(s) 856, 1125, 1659, 1680, 1799
RseI CAYNNNNRTG 2 cut(s) 140, 1707
SapI GCTCTTC 1 cut(s) 1159
SaqAI TTAA 5 cut(s) 729, 965, 1089, 1224, 1865
SatI GCNGC 5 cut(s) 93, 215, 605, 1534, 1836
Sau3AI GATC 9 cut(s) 3, 7, 304, 491, 576, 706, 748, 833, 1099
Sau96I GGNCC 4 cut(s) 270, 1452, 1636, 1637
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 4 cut(s) 504, 711, 816, 1560
SduI GDGCHC 3 cut(s) 930, 1214, 1640
SexAI ACCWGGT 1 cut(s) 502
SfaNI GCATC 6 cut(s) 73, 121, 814, 1057, 1429, 1891
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 2 cut(s) 270, 1452
SmiMI CAYNNNNRTG 2 cut(s) 140, 1707
SmlI CTYRAG 3 cut(s) 728, 976, 1088
SmoI CTYRAG 3 cut(s) 728, 976, 1088
SpeI ACTAGT 1 cut(s) 299
SseBI AGGCCT 1 cut(s) 471
SsiI CCGC 8 cut(s) 93, 114, 214, 290, 518, 798, 888, 1404
SspMI CTAG 8 cut(s) 300, 447, 1011, 1050, 1128, 1167, 1446, 1719
StuI AGGCCT 1 cut(s) 471
StyD4I CCNGG 4 cut(s) 502, 709, 814, 1558
StyI CCWWGG 1 cut(s) 1632
TaaI ACNGT 6 cut(s) 56, 640, 676, 932, 1715, 1987
TaiI ACGT 2 cut(s) 284, 1546
TaqI TCGA 4 cut(s) 6, 307, 1065, 1102
TatI WGTACW 4 cut(s) 855, 1124, 1658, 1798
TauI GCSGC 2 cut(s) 95, 217
TfiI GAWTC 6 cut(s) 181, 242, 653, 1439, 1694, 1808
Tru1I TTAA 5 cut(s) 729, 965, 1089, 1224, 1865
Tru9I TTAA 5 cut(s) 729, 965, 1089, 1224, 1865
TscAI CASTG 3 cut(s) 679, 1570, 1951
TseFI GTSAC 4 cut(s) 498, 1192, 1544, 1709
TseI GCWGC 3 cut(s) 604, 1533, 1835
Tsp45I GTSAC 4 cut(s) 498, 1192, 1544, 1709
TspGWI ACGGA 2 cut(s) 1474, 1820
TspRI CASTG 3 cut(s) 679, 1570, 1951
Van91I CCANNNNNTGG 1 cut(s) 191
Vha464I CTTAAG 2 cut(s) 728, 1088
VneI GTGCAC 1 cut(s) 926
VpaK11BI GGWCC 2 cut(s) 270, 1452
XapI RAATTY 6 cut(s) 377, 909, 967, 1183, 1233, 1825
XbaI TCTAGA 1 cut(s) 1718
XceI RCATGY 3 cut(s) 214, 926, 1436
XcmI CCANNNNNNNNNTGG 2 cut(s) 909, 1556
XmiI GTMKAC 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 985
XspI CTAG 8 cut(s) 300, 447, 1011, 1050, 1128, 1167, 1446, 1719
ZrmI AGTACT 1 cut(s) 857
Zsp2I ATGCAT 1 cut(s) 1297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.