Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015290

Physical Location & Seq

Genomic Coordinates Reverse (-)

204708 .. 205118

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCGTGTGTACCGTCAGGAGTGGGAACAGGAAGAGGATACTTGACGAAGATGAAGGATTTATCAGCGACGGCATCTGTGAGTTTGAGATCATTGGATTTAGGAGGAGGTAGGGGGAGGAGGAGGATGAGAGGCGTGATGGTGGCGATGGCGGTGCAGGGTAAGTTCAAAGGGACGCAGATGAGGGAGAAGCAGCTGACGGAGATGATTGAGAAGAAGGTGATGGAAGCAAGGGAGGTTTGCGAGGGAGATCCGAAGACGGACGAGTGCAAGGTGGCGTGGGACGAGGTGGAGGAGGTGAGCCAAGCCAAGGCCGATCTTAGGCTCAAACTGGAAAAGCACAAAGATCCCCTCGAGTCATTTTGTCGGGAGAATCCGGAGACGGACGAGTGCCGAATCTACGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010109 GO:0010110 GO:0016151 GO:0019222 GO:0031323 GO:0031324 GO:0032991 GO:0033554 GO:0034059 GO:0034605 GO:0036293 GO:0036294 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044424 GO:0044444 GO:0044464 GO:0045912 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0080090 GO:0080152 GO:0080153 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

137

Amino Acids

15.27

Weight (kDa)

6.62

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CP12	PF02672	66 - 135	4.5e-24	CP12 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76560
fragaria_vesca	FvH4_5g26470
malus_domestica	MD06G1001800.v1.1
prunus_persica	Prupe.5G002800_v2.0.a1
pyrus_communis	pycom06g00190
rosa_chinensis	RchiOBHm_Chr7g0217381
rosa_laevigata	RLG00000002483
rosa_multiflora	Rmu_sc0014260.1_g000001 Rmu_sc0024636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242270
rosa_rugosa	Rorug07G0168600
rosa_samantha	Rh7AG308300 Rh7BG299000 Rh7CG327600 Rh7DG307500
rosa_wichuraiana	Rw7G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	2 cut(s)	245, 341
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	310, 321
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	2 cut(s)	245, 341
Ama87I	CYCGRG	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	376
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	232, 310
AvaI	CYCGRG	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	3 cut(s)	133, 142, 217
BceAI	ACGGC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciVI	GTATCC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 321
Bse1I	ACTGG	1 cut(s)	336
BseAI	TCCGGA	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	310, 321
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	4 cut(s)	120, 133, 136, 308
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	2 cut(s)	187, 296
BslI	CCNNNNNNNGG	2 cut(s)	310, 321
BsmAI	GTCTC	1 cut(s)	374
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	187, 296
BsnI	GGCC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	353
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	4 cut(s)	89, 250, 316, 346
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	314
BspEI	TCCGGA	1 cut(s)	376
BspPI	GGATC	2 cut(s)	245, 341
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	89, 250, 316, 346
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	92, 253, 319, 349
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	4 cut(s)	89, 250, 316, 346
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	2 cut(s)	250, 346
BstYI	RGATCY	2 cut(s)	250, 346
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	132
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	11
CviJI	RGCY	5 cut(s)	196, 303, 308, 314, 325
CviKI_1	RGCY	5 cut(s)	196, 303, 308, 314, 325
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	4 cut(s)	91, 252, 318, 348
DpnII	GATC	4 cut(s)	89, 250, 316, 346
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	374
FaqI	GGGAC	2 cut(s)	187, 296
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	356, 373, 396
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	232, 310
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	3 cut(s)	18, 368, 377
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	49, 211
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	157, 270
HpyF3I	CTNAG	1 cut(s)	320
Kpn2I	TCCGGA	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	89, 250, 316, 346
LpnPI	CCDG	5 cut(s)	3, 15, 143, 317, 390
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	83
MalI	GATC	4 cut(s)	91, 252, 318, 348
MboI	GATC	4 cut(s)	89, 250, 316, 346
MboII	GAAGA	4 cut(s)	45, 61, 226, 268
MflI	RGATCY	2 cut(s)	250, 346
MlyI	GAGTC	1 cut(s)	365
MroI	TCCGGA	1 cut(s)	376
MseI	TTAA	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	1 cut(s)	377
NdeII	GATC	4 cut(s)	89, 250, 316, 346
PaeR7I	CTCGAG	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	373, 396
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspXI	VCTCGAGB	1 cut(s)	353
PsuI	RGATCY	2 cut(s)	250, 346
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	4 cut(s)	89, 250, 316, 346
SchI	GAGTC	1 cut(s)	365
SetI	ASST	7 cut(s)	112, 198, 222, 240, 276, 291, 300
SfaNI	GCATC	1 cut(s)	83
Sfr274I	CTCGAG	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SsiI	CCGC	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	354
TfiI	GAWTC	2 cut(s)	373, 396
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	3 cut(s)	215, 275, 398
XhoI	CTCGAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.