Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010123

Physical Location & Seq

Genomic Coordinates Reverse (-)

3189896 .. 3194678

Gene Structure 4783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGTCCCTACCCACCCATTGTGGTTTGCAAGCCCTCCGCTTATTCTCCCTTCTCCCCTTTCTCTCTGCTCCAGCAACTCAGACCGCAACCAGACGCCGATCGTCGCCAAATTCCATAATGGGCTGCACTGTGAGAGAGAAGCACATCCGTACAAATCGAAAGCCCCGATCTACAAAACCCGATGTCGATTATTGTTGTCACTTTGATAGGGCGTCAATCTCCAAATCCATACTCGAATCGGGTCTCAAACCATTCAATCACCATCTGGGTTCCAACAACGATTCCACCCAGAACCCTAAATCGATCCCAGGCCCCAACCCCAATTTGGATGAGAGCGGGTGGGGTTACTGCACTGAGGAACAATTGGAGGAGATTTTATTGAAAAATTTGGAATTTTTGTACAATGAGGCTATTTCTAAGCTAGTTGCGTTGGGTTATGATGAGGATGCCGCACTTAAAGCGATATTGCGAAATGGGCATTGCTATGGCGGTATGGATGTGTTAACCAACATTATGCATAACTCATTGGCCTATTTGAATAGTAGTTGTGGAAGCAGTAATGGGAAGTCGGATGAGGCTGAGCCTGTTTTTGCTGATTTAAGGCAGCTGGAGGAGTACTCGCTTGCGGGTATGGTGTGTATGTTGCAACAAGTTAGGCCACATTTAAGTAAAGGTGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTGGGTCGGGCAAGTACTATGGAAATTCCCTCCCTTCCCAGTGGAGGTAATGAAAATAGTAGCTCGACATCCAGTATTGTTGAATCTGGTAGTAATGGTAACCATTCAGTTGGCGTTATGGCTCCTGCACTTTGTAGGTTTCATGGTGGTTGGGGGTTTGGAGATGGGGGAGCTTCAGAGTTTCCGGTTCATGGGTTTTTCTCTTATGGTGCTGAATTGACTTTGCAAAGGGATATTGAGTGTCCCAAGAGGTTTAACCTTTCTCCCTCCATGAAGTCGTTGTTGAAAAGGAATGTTGCAATGTTTGCAGCTGGTTTTCGAGCAAACTCAAAACAGTTCAATGCTCAACCACAGGCTTGCCTGAACAGTTTAACTAGTGGGGACACCTCGGTTGGACTGGGGTCTGAAGCTGCAGTTCAGCAGTCTGATGAGTCAAAGAATTCAAAGAACCAGGAGGTGGTTAACTCAGTGTTGAGTAAGTTTCGCGATTTGAATCTTGATGAGAATATGGAGTTTGTTGGGGAAGATCAAAAGAATGAGGTGATAGTTACTCTACTTCATCAAGTAAAAGAGCTTGAGAAGCAAGTTAAGGAACGGAAGGAATGGGCGCACCAGAAGGCAATGCAGGCTGCAACAAAGCTCAGTCACGATCTTGCAGAGCTTAAAATGCTGAGGCTCGAAAGGGAGGAGACTCAAAGGTTGAAGAAAGGGAAGCAAACTCTTGAGGACTCAACCATGAAGAGACTCTCAGAAATGGAAAACGCTCTAAGAAAGGCCAGTGGTCAAGTGGACCGCGCAAATGCAGCTGTGAGACGGCTTGAGACTGAGAATGCAGAAATCAGAGCAGAGATGGAGGCTTCTAAACTGAGTGCATCAGAGTCAGTAACAACTTGTTTGGAGGTTGCAAAGAGGGAGAAAAAATATCTGAAGAGGCTTTTGGCTTGGGAGAAACAGAAAACTAAATTGCAGGAAGAGATTGCAGAGGAGAAAGAGAAGATTTCAGAATTGCAACAACATTTGGCTCGGATGAAGCATGATCAGAAAGAAGCTGAGGTGAAATGGAGGCAGGAACTGAAGGCTAAGGAGGAAGCCTTGACTCAAGTGGAAGAGGAACGACGTGCTAAGGAAGCAGCTGAGGCTAGTAATAAAAGAAAGCTTGAAGAATTGCGCCTAAAGATAGAAATAGATTTCCAGCGTCACAAGGATGACCTCCAAAGACTTGAGCAGGAACTCTCACGTCTAAAAGTATCCGCCCAGTCTACTGAATCGGTACATCAATCAAATGCGTTGCCAAAAGCAATCCCAGAAGGTGCAAAACCCCAAGGAGAAACTATTGCTAAGATGCTTCGTGATTTGGATAACCTGGAGAAATCAGCAGAGAAAGAAGTGGGCTGTGATAGGGAATGCATAATTTGCATGAGAGATGAAGTCTCTGTTGTTTTCCTGCCATGTGCTCATCAAGTTCTTTGTGCCAATTGCAATGATGATTACGGGAAAAAAGGTAAGGCCACCTGCCCATGTTGCCGGGCTCCTATTGAACATAGAATTCGTGTTTTTGGTGCAAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

761

Amino Acids

84.9

Weight (kDa)

6.75

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	129 - 244	9.6e-28	PIR2-like, helical domain
zf-C3HC4_3	PF13920	703 - 751	6.3e-12	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35330 AT2G35330
fragaria_vesca	FvH4_5g21710 FvH4_5g21710
malus_domestica	MD06G1032100.v1.1
prunus_persica	Prupe.5G040000_v2.0.a1 Prupe.5G040000_v2.0.a1
pyrus_communis	pycom06g02660
rosa_chinensis	RchiOBHm_Chr7g0209211
rosa_laevigata	RLG00000003157
rosa_multiflora	Rmu_sc0001701.1_g000007 Rmu_sc0031054.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249630
rosa_rugosa	Rorug07G0110200 Rorug07G0110300 Rorug07G0110400
rosa_samantha	Rh7AG244300 Rh7BG239500 Rh7CG259800 Rh7DG251100
rosa_wichuraiana	Rw7G020720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2231
Acc36I	ACCTGC	1 cut(s)	2231
AccB7I	CCANNNNNTGG	1 cut(s)	1168
AccBSI	CCGCTC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	1970
AccII	CGCG	2 cut(s)	1197, 1506
AciI	CCGC	8 cut(s)	37, 84, 336, 450, 489, 626, 1504, 1962
AclWI	GGATC	1 cut(s)	298
AcsI	RAATTY	6 cut(s)	109, 385, 392, 735, 1150, 2256
AcuI	CTGAAG	4 cut(s)	870, 1137, 1658, 1805
AcyI	GRCGYC	2 cut(s)	94, 212
AfaI	GTAC	5 cut(s)	151, 401, 617, 727, 1983
AfiI	CCNNNNNNNGG	4 cut(s)	325, 755, 902, 1168
AhlI	ACTAGT	1 cut(s)	1085
AjiI	CACGTC	2 cut(s)	1829, 1949
AjnI	CCWGG	3 cut(s)	307, 1161, 2073
AjuI	GAANNNNNNNTTGG	2 cut(s)	1631, 1663
Alw21I	GWGCWC	1 cut(s)	2167
Alw26I	GTCTC	6 cut(s)	248, 1394, 1447, 1516, 1526, 2146
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	1783
AoxI	GGCC	5 cut(s)	310, 528, 656, 1485, 2217
ApeKI	GCWGC	7 cut(s)	123, 604, 1019, 1121, 1340, 1514, 1841
ApoI	RAATTY	6 cut(s)	109, 385, 392, 735, 1150, 2256
AspLEI	GCGC	3 cut(s)	1321, 1508, 1881
AspS9I	GGNCC	2 cut(s)	311, 1501
AsuC2I	CCSGG	1 cut(s)	2237
AsuHPI	GGTGA	4 cut(s)	251, 686, 1264, 1777
AvaII	GGWCC	1 cut(s)	1501
BanII	GRGCYC	1 cut(s)	2242
Bbv12I	GWGCWC	1 cut(s)	2167
BbvCI	CCTCAGC	3 cut(s)	1382, 1761, 1845
BbvI	GCAGC	7 cut(s)	110, 616, 1031, 1108, 1327, 1526, 1853
BccI	CCATC	3 cut(s)	270, 869, 1555
BceAI	ACGGC	1 cut(s)	1541
BciT130I	CCWGG	3 cut(s)	309, 1163, 2075
BciVI	GTATCC	1 cut(s)	1969
BclI	TGATCA	1 cut(s)	1747
BcnI	CCSGG	1 cut(s)	2237
BcoDI	GTCTC	6 cut(s)	248, 1394, 1447, 1516, 1526, 2146
BcuI	ACTAGT	1 cut(s)	1085
BfaI	CTAG	3 cut(s)	422, 1086, 1851
BfmI	CTRYAG	1 cut(s)	1122
BfuAI	ACCTGC	1 cut(s)	2231
BfuI	GTATCC	1 cut(s)	1969
BisI	GCNGC	8 cut(s)	124, 450, 605, 1020, 1122, 1341, 1515, 1842
BlpI	GCTNAGC	1 cut(s)	579
BlsI	GCNGC	8 cut(s)	125, 451, 606, 1021, 1123, 1342, 1516, 1843
BmcAI	AGTACT	2 cut(s)	617, 727
Bme1390I	CCNGG	4 cut(s)	309, 1163, 2075, 2237
Bme18I	GGWCC	1 cut(s)	1501
BmgBI	CACGTC	2 cut(s)	1829, 1949
BmgT120I	GGNCC	2 cut(s)	311, 1501
BmiI	GGNNCC	4 cut(s)	271, 313, 834, 2241
BmrFI	CCNGG	4 cut(s)	309, 1163, 2075, 2237
BmrI	ACTGGG	3 cut(s)	744, 1118, 1960
BmsI	GCATC	4 cut(s)	436, 667, 1592, 2043
BmuI	ACTGGG	3 cut(s)	744, 1118, 1960
BoxI	GACNNNNGTC	1 cut(s)	1111
BplI	GAGNNNNNCTC	2 cut(s)	602, 634
BpmI	CTGGAG	3 cut(s)	54, 629, 2096
Bpu10I	CCTNAGC	5 cut(s)	1382, 1761, 1791, 1833, 1845
Bpu1102I	GCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	5 cut(s)	1307, 1454, 1550, 1794, 1952
BpuMI	CCSGG	1 cut(s)	2237
Bsa29I	ATCGAT	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaHI	GRCGYC	2 cut(s)	94, 212
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	307, 1098, 2032
BsaWI	WCCGGW	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	4 cut(s)	325, 755, 902, 1168
Bse1I	ACTGG	5 cut(s)	750, 783, 1113, 1488, 1966
Bse3DI	GCAATG	4 cut(s)	478, 1017, 1338, 2197
Bse8I	GATNNNNATC	1 cut(s)	1203
BseBI	CCWGG	3 cut(s)	309, 1163, 2075
BseCI	ATCGAT	1 cut(s)	302
BseDI	CCNNGG	3 cut(s)	307, 1098, 2032
BseGI	GGATG	8 cut(s)	144, 334, 451, 502, 577, 779, 1743, 1921
BseJI	GATNNNNATC	1 cut(s)	1203
BseLI	CCNNNNNNNGG	4 cut(s)	325, 755, 902, 1168
BseMI	GCAATG	4 cut(s)	478, 1017, 1338, 2197
BseNI	ACTGG	5 cut(s)	750, 783, 1113, 1488, 1966
BseRI	GAGGAG	4 cut(s)	383, 626, 1412, 1709
BseXI	GCAGC	7 cut(s)	110, 616, 1031, 1108, 1327, 1526, 1853
BsgI	GTGCAG	3 cut(s)	109, 334, 822
Bsh1236I	CGCG	2 cut(s)	1197, 1506
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	5 cut(s)	312, 530, 658, 1487, 2219
BshVI	ATCGAT	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	2167
BsiSI	CCGG	2 cut(s)	896, 2236
BslFI	GGGAC	2 cut(s)	939, 1106
BslI	CCNNNNNNNGG	4 cut(s)	325, 755, 902, 1168
BsmAI	GTCTC	6 cut(s)	248, 1394, 1447, 1516, 1526, 2146
BsmBI	CGTCTC	1 cut(s)	1516
BsmFI	GGGAC	2 cut(s)	939, 1106
BsmI	GAATGC	2 cut(s)	1546, 2120
BsnI	GGCC	5 cut(s)	312, 530, 658, 1487, 2219
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	2167, 2242
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	7 cut(s)	98, 167, 303, 703, 1237, 1360, 1747
Bsp1720I	GCTNAGC	1 cut(s)	579
Bsp68I	TCGCGA	1 cut(s)	1197
BspACI	CCGC	8 cut(s)	37, 84, 336, 450, 489, 626, 1504, 1962
BspANI	GGCC	5 cut(s)	312, 530, 658, 1487, 2219
BspDI	ATCGAT	1 cut(s)	302
BspFNI	CGCG	2 cut(s)	1197, 1506
BspLI	GGNNCC	4 cut(s)	271, 313, 834, 2241
BspMAI	CTGCAG	1 cut(s)	1126
BspMI	ACCTGC	1 cut(s)	2231
BspPI	GGATC	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	336
BsrDI	GCAATG	4 cut(s)	478, 1017, 1338, 2197
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	5 cut(s)	750, 783, 1113, 1488, 1966
BssECI	CCNNGG	3 cut(s)	307, 1098, 2032
BssMI	GATC	7 cut(s)	98, 167, 303, 703, 1237, 1360, 1747
BssNI	GRCGYC	2 cut(s)	94, 212
BssT1I	CCWWGG	1 cut(s)	2032
Bst2UI	CCWGG	3 cut(s)	309, 1163, 2075
Bst4CI	ACNGT	3 cut(s)	130, 1047, 1079
Bst6I	CTCTTC	4 cut(s)	1445, 1634, 1677, 1812
BstACI	GRCGYC	2 cut(s)	94, 212
BstAPI	GCANNNNNTGC	2 cut(s)	1016, 2124
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	4 cut(s)	30, 624, 1069, 1338
BstEII	GGTNACC	1 cut(s)	809
BstF5I	GGATG	8 cut(s)	144, 334, 451, 502, 577, 779, 1743, 1921
BstFNI	CGCG	2 cut(s)	1197, 1506
BstHHI	GCGC	3 cut(s)	1321, 1508, 1881
BstKTI	GATC	7 cut(s)	101, 170, 306, 706, 1240, 1363, 1750
BstMAI	GTCTC	6 cut(s)	248, 1394, 1447, 1516, 1526, 2146
BstMBI	GATC	7 cut(s)	98, 167, 303, 703, 1237, 1360, 1747
BstMCI	CGRYCG	1 cut(s)	101
BstNI	CCWGG	3 cut(s)	309, 1163, 2075
BstPAI	GACNNNNGTC	1 cut(s)	1111
BstPI	GGTNACC	1 cut(s)	809
BstSCI	CCNGG	4 cut(s)	307, 1161, 2073, 2235
BstSFI	CTRYAG	1 cut(s)	1122
BstUI	CGCG	2 cut(s)	1197, 1506
BstV1I	GCAGC	7 cut(s)	110, 616, 1031, 1108, 1327, 1526, 1853
BstXI	CCANNNNNNTGG	1 cut(s)	821
Bsu15I	ATCGAT	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	1969
BsuRI	GGCC	5 cut(s)	312, 530, 658, 1487, 2219
BsuTUI	ATCGAT	1 cut(s)	302
BtrI	CACGTC	2 cut(s)	1829, 1949
BtsCI	GGATG	8 cut(s)	144, 334, 451, 502, 577, 779, 1743, 1921
BtsIMutI	CAGTG	5 cut(s)	126, 351, 757, 1185, 1495
BtuMI	TCGCGA	1 cut(s)	1197
BveI	ACCTGC	1 cut(s)	2231
Cac8I	GCNNGC	4 cut(s)	30, 624, 1069, 1338
CaiI	CAGNNNCTG	1 cut(s)	1783
CfoI	GCGC	3 cut(s)	1321, 1508, 1881
Cfr13I	GGNCC	2 cut(s)	311, 1501
ClaI	ATCGAT	1 cut(s)	302
CseI	GACGC	3 cut(s)	102, 201, 1895
Csp6I	GTAC	5 cut(s)	150, 400, 616, 726, 1982
CviAII	CATG	9 cut(s)	710, 854, 902, 982, 1447, 1745, 2128, 2160, 2229
CviQI	GTAC	5 cut(s)	150, 400, 616, 726, 1982
DpnI	GATC	7 cut(s)	100, 169, 305, 705, 1239, 1362, 1749
DpnII	GATC	7 cut(s)	98, 167, 303, 703, 1237, 1360, 1747
Eam1104I	CTCTTC	4 cut(s)	1445, 1634, 1677, 1812
EarI	CTCTTC	4 cut(s)	1445, 1634, 1677, 1812
EciI	GGCGGA	1 cut(s)	1951
Eco130I	CCWWGG	1 cut(s)	2032
Eco24I	GRGCYC	1 cut(s)	2242
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	1501
Eco57I	CTGAAG	4 cut(s)	870, 1137, 1658, 1805
Eco91I	GGTNACC	1 cut(s)	809
EcoO109I	RGGNCCY	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	809
EcoRI	GAATTC	2 cut(s)	1150, 2256
EcoRII	CCWGG	3 cut(s)	307, 1161, 2073
EcoT14I	CCWWGG	1 cut(s)	2032
EcoT22I	ATGCAT	2 cut(s)	519, 2120
EcoT38I	GRGCYC	1 cut(s)	2242
ErhI	CCWWGG	1 cut(s)	2032
Esp3I	CGTCTC	1 cut(s)	1516
FaeI	CATG	9 cut(s)	713, 857, 905, 985, 1450, 1748, 2131, 2163, 2232
FaqI	GGGAC	2 cut(s)	939, 1106
FatI	CATG	9 cut(s)	709, 853, 901, 981, 1446, 1744, 2127, 2159, 2228
FauI	CCCGC	2 cut(s)	329, 619
FbaI	TGATCA	1 cut(s)	1747
FblI	GTMKAC	1 cut(s)	1970
Fnu4HI	GCNGC	8 cut(s)	124, 450, 605, 1020, 1122, 1341, 1515, 1842
FokI	GGATG	8 cut(s)	131, 341, 458, 509, 584, 766, 1750, 1928
FriOI	GRGCYC	1 cut(s)	2242
Fsp4HI	GCNGC	8 cut(s)	124, 450, 605, 1020, 1122, 1341, 1515, 1842
FspBI	CTAG	3 cut(s)	422, 1086, 1851
GlaI	GCGC	3 cut(s)	1320, 1507, 1880
GluI	GCNGC	8 cut(s)	124, 450, 605, 1020, 1122, 1341, 1515, 1842
GsuI	CTGGAG	3 cut(s)	54, 629, 2096
HaeIII	GGCC	5 cut(s)	312, 530, 658, 1487, 2219
HapII	CCGG	2 cut(s)	896, 2236
HgaI	GACGC	3 cut(s)	102, 201, 1895
HhaI	GCGC	3 cut(s)	1321, 1508, 1881
Hin1I	GRCGYC	2 cut(s)	94, 212
Hin1II	CATG	9 cut(s)	713, 857, 905, 985, 1450, 1748, 2131, 2163, 2232
Hin6I	GCGC	3 cut(s)	1319, 1506, 1879
HinP1I	GCGC	3 cut(s)	1319, 1506, 1879
HincII	GTYRAC	2 cut(s)	504, 1174
HindII	GTYRAC	2 cut(s)	504, 1174
HindIII	AAGCTT	1 cut(s)	1865
HpaI	GTTAAC	2 cut(s)	504, 1174
HpaII	CCGG	2 cut(s)	896, 2236
HphI	GGTGA	4 cut(s)	251, 686, 1264, 1777
Hpy166II	GTNNAC	4 cut(s)	504, 1174, 1501, 1971
Hpy188III	TCNNGA	5 cut(s)	1196, 1208, 1358, 1433, 2060
Hpy8I	GTNNAC	4 cut(s)	504, 1174, 1501, 1971
Hpy99I	CGWCG	2 cut(s)	106, 1830
HpyAV	CCTTC	6 cut(s)	59, 755, 1303, 1321, 1780, 2012
HpyCH4III	ACNGT	3 cut(s)	130, 1047, 1079
HpyCH4IV	ACGT	2 cut(s)	1828, 1948
HpySE526I	ACGT	2 cut(s)	1828, 1948
Hsp92I	GRCGYC	2 cut(s)	94, 212
Hsp92II	CATG	9 cut(s)	713, 857, 905, 985, 1450, 1748, 2131, 2163, 2232
HspAI	GCGC	3 cut(s)	1319, 1506, 1879
Ksp22I	TGATCA	1 cut(s)	1747
KspAI	GTTAAC	2 cut(s)	504, 1174
Kzo9I	GATC	7 cut(s)	98, 167, 303, 703, 1237, 1360, 1747
LmnI	GCTCC	4 cut(s)	73, 838, 881, 2245
Lsp1109I	GCAGC	7 cut(s)	110, 616, 1031, 1108, 1327, 1526, 1853
LweI	GCATC	4 cut(s)	436, 667, 1592, 2043
MaeI	CTAG	3 cut(s)	422, 1086, 1851
MaeII	ACGT	2 cut(s)	1828, 1948
MaeIII	GTNAC	7 cut(s)	197, 344, 809, 1258, 1355, 1594, 1907
MalI	GATC	7 cut(s)	100, 169, 305, 705, 1239, 1362, 1749
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	7 cut(s)	98, 167, 303, 703, 1237, 1360, 1747
MboII	GAAGA	9 cut(s)	698, 1247, 1426, 1462, 1651, 1694, 1717, 1829, 1883
MfeI	CAATTG	2 cut(s)	362, 2185
MhlI	GDGCHC	2 cut(s)	2167, 2242
MlyI	GAGTC	6 cut(s)	1151, 1396, 1433, 1449, 1598, 1801
MmeI	TCCRAC	3 cut(s)	297, 549, 1084
Mph1103I	ATGCAT	2 cut(s)	519, 2120
MseI	TTAA	9 cut(s)	456, 503, 599, 665, 966, 1082, 1173, 1299, 1374
MslI	CAYNNNNRTG	2 cut(s)	483, 1914
MspA1I	CMGCKG	4 cut(s)	607, 1022, 1517, 1844
MspI	CCGG	2 cut(s)	896, 2236
MspR9I	CCNGG	4 cut(s)	309, 1163, 2075, 2237
MunI	CAATTG	2 cut(s)	362, 2185
Mva1269I	GAATGC	2 cut(s)	1546, 2120
MvaI	CCWGG	3 cut(s)	309, 1163, 2075
MvnI	CGCG	2 cut(s)	1197, 1506
NciI	CCSGG	1 cut(s)	2237
NdeII	GATC	7 cut(s)	98, 167, 303, 703, 1237, 1360, 1747
NlaIII	CATG	9 cut(s)	713, 857, 905, 985, 1450, 1748, 2131, 2163, 2232
NlaIV	GGNNCC	4 cut(s)	271, 313, 834, 2241
NmuCI	GTSAC	3 cut(s)	197, 1355, 1907
NruI	TCGCGA	1 cut(s)	1197
NsiI	ATGCAT	2 cut(s)	519, 2120
PaqCI	CACCTGC	1 cut(s)	2231
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PctI	GAATGC	2 cut(s)	1546, 2120
PfeI	GAWTC	5 cut(s)	236, 281, 794, 1204, 1976
PflMI	CCANNNNNTGG	1 cut(s)	1168
PkrI	GCNGC	8 cut(s)	125, 451, 606, 1021, 1123, 1342, 1516, 1843
Ple19I	CGATCG	1 cut(s)	101
PleI	GAGTC	6 cut(s)	1150, 1396, 1433, 1449, 1597, 1801
PpsI	GAGTC	6 cut(s)	1150, 1396, 1433, 1449, 1597, 1801
PshAI	GACNNNNGTC	1 cut(s)	1111
Psp6I	CCWGG	3 cut(s)	307, 1161, 2073
PspEI	GGTNACC	1 cut(s)	809
PspGI	CCWGG	3 cut(s)	307, 1161, 2073
PspN4I	GGNNCC	4 cut(s)	271, 313, 834, 2241
PspPI	GGNCC	2 cut(s)	311, 1501
PstI	CTGCAG	1 cut(s)	1126
PstNI	CAGNNNCTG	1 cut(s)	1783
PvuI	CGATCG	1 cut(s)	101
PvuII	CAGCTG	4 cut(s)	607, 1022, 1517, 1844
RruI	TCGCGA	1 cut(s)	1197
RsaI	GTAC	5 cut(s)	151, 401, 617, 727, 1983
RsaNI	GTAC	5 cut(s)	150, 400, 616, 726, 1982
RseI	CAYNNNNRTG	2 cut(s)	483, 1914
SaqAI	TTAA	9 cut(s)	456, 503, 599, 665, 966, 1082, 1173, 1299, 1374
SatI	GCNGC	8 cut(s)	124, 450, 605, 1020, 1122, 1341, 1515, 1842
Sau3AI	GATC	7 cut(s)	98, 167, 303, 703, 1237, 1360, 1747
Sau96I	GGNCC	2 cut(s)	311, 1501
ScaI	AGTACT	2 cut(s)	617, 727
SchI	GAGTC	6 cut(s)	1151, 1396, 1433, 1449, 1598, 1801
ScrFI	CCNGG	4 cut(s)	309, 1163, 2075, 2237
SduI	GDGCHC	2 cut(s)	2167, 2242
SfaNI	GCATC	4 cut(s)	436, 667, 1592, 2043
SfcI	CTRYAG	1 cut(s)	1122
SinI	GGWCC	1 cut(s)	1501
SmiMI	CAYNNNNRTG	2 cut(s)	483, 1914
SmlI	CTYRAG	5 cut(s)	1286, 1433, 1529, 1809, 1931
SmoI	CTYRAG	5 cut(s)	1286, 1433, 1529, 1809, 1931
SpeI	ACTAGT	1 cut(s)	1085
SsiI	CCGC	8 cut(s)	37, 84, 336, 450, 489, 626, 1504, 1962
SspMI	CTAG	3 cut(s)	422, 1086, 1851
StyD4I	CCNGG	4 cut(s)	307, 1161, 2073, 2235
StyI	CCWWGG	1 cut(s)	2032
TaaI	ACNGT	3 cut(s)	130, 1047, 1079
TaiI	ACGT	2 cut(s)	1831, 1951
TaqI	TCGA	7 cut(s)	157, 186, 234, 302, 776, 1030, 1389
TatI	WGTACW	3 cut(s)	399, 615, 725
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	5 cut(s)	236, 281, 794, 1204, 1976
Tru1I	TTAA	9 cut(s)	456, 503, 599, 665, 966, 1082, 1173, 1299, 1374
Tru9I	TTAA	9 cut(s)	456, 503, 599, 665, 966, 1082, 1173, 1299, 1374
TscAI	CASTG	5 cut(s)	133, 358, 757, 1185, 1495
TseFI	GTSAC	3 cut(s)	197, 1355, 1907
TseI	GCWGC	7 cut(s)	123, 604, 1019, 1121, 1340, 1514, 1841
Tsp45I	GTSAC	3 cut(s)	197, 1355, 1907
TspDTI	ATGAA	9 cut(s)	698, 777, 842, 890, 998, 1259, 1463, 1754, 2151
TspGWI	ACGGA	2 cut(s)	137, 1321
TspRI	CASTG	5 cut(s)	133, 358, 757, 1185, 1495
Van91I	CCANNNNNTGG	1 cut(s)	1168
VpaK11BI	GGWCC	1 cut(s)	1501
XapI	RAATTY	6 cut(s)	109, 385, 392, 735, 1150, 2256
XcmI	CCANNNNNNNNNTGG	2 cut(s)	322, 1495
XmiI	GTMKAC	1 cut(s)	1970
XspI	CTAG	3 cut(s)	422, 1086, 1851
ZrmI	AGTACT	2 cut(s)	617, 727
Zsp2I	ATGCAT	2 cut(s)	519, 2120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.