Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010123

Physical Location & Seq

Genomic Coordinates Forward (+)

43417814 .. 43423040

Gene Structure 5227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00249630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2259 bp

ATGCCCGGCTCCTCTTGTTCTTCTCCTCTCTTTCACCAACTCTCTCAGACTCCACCGCCACCACCACCACCACCGCCGCCGACGATCGTCGCCGATTCCATAGCTTCAATCGCGAAATCGGTGCTGGAATCGGGCCTCAAACCCTTCAATACTCAAAACCCTAATTCGGCCCAGAGGCCCAATTCCGACGATACCGGCTGGGGATACTGCACTGAGGACCAATTGGAGGAGCTTCTGTTGAAGAATCTGGAGTTTCTCTACAATGAGGCGATTTCCAAGCTAGTTGCGTTGGGTTACGACGAGGACCTTGCCCTCAAAGCCATTTTGAGAAATGGGCACTGCTATGGCGGCATGGATGTGTTGACTAACATCATGCACAACTCGTTGGCTTATTTGAATAGTAGTTCCGGGAGTGGCGATGGGAATTCCGAGGATTCGGAGCCGGTTTTCGCTGATTTGAGGCAGTTGGAGGAGTATTCGCTGGCCGGGATGGTGTGTATGCTGCAGCAGGTTAGGCCGAGGTTGAGTAAAGGTGATGCCATGTGGTGTTTGCTAATGAGTGATCTTCATGTGGGGAGGGCCAGTACTATGGAGATTCCGGTTTCATGGCGGGTGGGGTTTTGGGAATGGGGGAGTTCGGAGTTTCCTGTTCATGGGTTTTTGTCGTATGGTGCTGAGCTGACTTTACAGAGGGATATTGAGTGTCCCAAGAGGTTTAATCTTTCGCCTTCAATGAAGTCGTTGTTGAAGAGGAATGTAGCAATGTTTGCAGCTGGTTTTCGAGCAAACTCCAAACAGTTACATTCGCAACCGCAGGCTTCCCTCAGCAGTTTCACGAGTGGGGATGCGCTGGTTGGATTGGGGGCTGAAGTTGCAGTCCAGCAATCTGAAGAGTCACAGAAGTCAAAGAACCAGGAGGTGGTTAACTCGGTGTTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAACTTGTAGGGGAAGATCAAAAGAATGAGGTGATAGTAACTTTACTTCATCAGGTTAAAGAGCTTGAGAAGCAAGTGAAGGAGCGCAAGGAGTGGGCCCACCAGAAGGCTATGCAAGCTGCAAAAAAGCTTAGTCATGATCTGACAGAGCTTAAAATGCTGAGGATGGAAAGAGAGGAGACTCAAAGGTTGAAGAAAGGGAAGCAAACTCTTGAGGACACAACCATGAAGAGGCTCTCCGAGATGGAAAACGCTCTAAGAAAGGCTAGTGGTCAAGTGGACCGGGCAAATGCAGCTGTTAGAAGACTTGAGAATGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCTAAACTGAGTGCGTCAGAGTCAGTCAACACCTGTTTAGAGGTTGCAAAGAGGGAGAAAAAGTGCCTGAAGAGGCTTTTGGCTTGGGAGAAGCAAAAAGGTAAGTTGCAGGAAGAGATTGGAGAGGAGAAACAGAAGATTTCAGAATTGCAACAACAGTTAGCTCGTATCAAGCAGGATCAGAAAGAAGCTGAGTCAGCTTCAGTTCTGCATCAAAACAACCAAAGTCAATGTCATATGGCTGAGCCAGCAATGCTGGTGACCATGCTTTCAGATGTTACAAACTCCTTGGCCTTTATGGATATCATCCTTTTTAGTCAGACCAACGCTAACTGGATAGAGGATGTGACAAATACTGGACGTTACCTTGGGGTGGGGAGCTTACATAAGGTTCCAGCACAATTTATAGTTAGCATCCCGGTGAAATGGAAGCAAGAGGTGAAGGCTAAGGAGGCAGCCTTGGCACAAGTGGACGAGGAAAGAGTTGCCAAGGAAACAGCTGAGGCTGGTAATAAACGAAAGCTTGAGGCTTTGCGCCTAAAGATAGAAATAGATTTCCAACGTCACAAGGATGATCTCCAAAGACTTGAGCAAGAACTCTCACGTCTAAAATCATCTGCGCAGTCTACCGAATTGCCTCTTCCATCAAATGCTTTGCCAAGAGGAATCTCTGGTGGTGCAAAACCTCAAGGAGAAACAATTGCCAAGCTGCTTCGTGAATTAGATAACCTGGAGAATTCTGCAGAGAAAGAAGTCAGCTGCGATAGAGAATGCATGATATGCATGAAAGATGAAGTGTCTGTTGTTTTCCTGCCCTGTGCTCATCAAGTTCTCTGCGCTAATTGCAATGATGATTATGGCAAGAAAGGAAGAGCTACTTGCCTATGTTGCCGAGCTCCAATTGAACATAGAATTCGTGTTTTTGGTGCAAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

752

Amino Acids

83.85

Weight (kDa)

5.97

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	82 - 197	9e-27	PIR2-like, helical domain
zf-C3HC4_3	PF13920	695 - 743	8.8e-11	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35330 AT2G35330
fragaria_vesca	FvH4_5g21710 FvH4_5g21710
malus_domestica	MD06G1032100.v1.1
prunus_persica	Prupe.5G040000_v2.0.a1 Prupe.5G040000_v2.0.a1
pyrus_communis	pycom06g02660
rosa_chinensis	RchiOBHm_Chr7g0209211
rosa_laevigata	RLG00000003157
rosa_multiflora	Rmu_sc0001701.1_g000007 Rmu_sc0031054.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249630
rosa_rugosa	Rorug07G0110200 Rorug07G0110300 Rorug07G0110400
rosa_samantha	Rh7AG244300 Rh7BG239500 Rh7CG259800 Rh7DG251100
rosa_wichuraiana	Rw7G020720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1941
Acc36I	ACCTGC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	919
AccI	GTMKAC	1 cut(s)	1946
AccII	CGCG	1 cut(s)	113
AciI	CCGC	6 cut(s)	56, 74, 77, 348, 610, 812
AclWI	GGATC	1 cut(s)	1506
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	5 cut(s)	424, 941, 967, 2056, 2232
AcuI	CTGAAG	4 cut(s)	888, 909, 1409, 1506
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	7 cut(s)	166, 226, 653, 919, 1078, 1203, 1693
AgsI	TTSAA	9 cut(s)	108, 148, 241, 397, 732, 748, 955, 1165, 2225
AjiI	CACGTC	1 cut(s)	1925
AjnI	CCWGG	2 cut(s)	912, 2049
AjuI	GAANNNNNNNTTGG	2 cut(s)	1382, 1414
Alw21I	GWGCWC	2 cut(s)	2143, 2218
Alw26I	GTCTC	1 cut(s)	1145
AlwI	GGATC	1 cut(s)	1506
AoxI	GGCC	8 cut(s)	133, 168, 176, 483, 515, 579, 1068, 1611
ApaI	GGGCCC	1 cut(s)	1072
ApeKI	GCWGC	8 cut(s)	502, 505, 770, 1091, 1265, 1775, 2029, 2079
ApoI	RAATTY	5 cut(s)	424, 941, 967, 2056, 2232
ArsI	GACNNNNNNTTYG	2 cut(s)	1537, 1569
AspLEI	GCGC	5 cut(s)	850, 1059, 1857, 1942, 2159
AspS9I	GGNCC	9 cut(s)	133, 169, 177, 217, 304, 579, 1068, 1069, 1252
AsuC2I	CCSGG	5 cut(s)	6, 409, 487, 1256, 1739
AsuHPI	GGTGA	6 cut(s)	26, 545, 1015, 1591, 1753, 1771
AvaII	GGWCC	3 cut(s)	217, 304, 1252
BaeGI	GKGCMC	2 cut(s)	339, 1072
BanII	GRGCYC	2 cut(s)	1072, 2218
BarI	GAAGNNNNNNTAC	2 cut(s)	1002, 1034
BauI	CACGAG	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	1282
Bbv12I	GWGCWC	2 cut(s)	2143, 2218
BbvCI	CCTCAGC	3 cut(s)	824, 1133, 1821
BbvI	GCAGC	8 cut(s)	489, 517, 782, 1078, 1277, 1787, 2016, 2066
BccI	CCATC	6 cut(s)	413, 484, 1132, 1210, 1306, 1972
BcgI	CGANNNNNNTGC	4 cut(s)	103, 137, 290, 324
BciT130I	CCWGG	2 cut(s)	914, 2051
BciVI	GTATCC	1 cut(s)	197
BcnI	CCSGG	5 cut(s)	6, 409, 487, 1256, 1739
BcoDI	GTCTC	1 cut(s)	1145
BfaI	CTAG	2 cut(s)	281, 1239
BfmI	CTRYAG	2 cut(s)	503, 2061
BfuAI	ACCTGC	1 cut(s)	499
BfuI	GTATCC	1 cut(s)	197
BlpI	GCTNAGC	2 cut(s)	675, 1563
BmcAI	AGTACT	1 cut(s)	586
Bme1390I	CCNGG	7 cut(s)	6, 409, 487, 914, 1256, 1739, 2051
Bme18I	GGWCC	3 cut(s)	217, 304, 1252
BmgBI	CACGTC	1 cut(s)	1925
BmgT120I	GGNCC	9 cut(s)	133, 169, 177, 217, 304, 579, 1068, 1069, 1252
BmiI	GGNNCC	4 cut(s)	10, 441, 1070, 1713
BmrFI	CCNGG	7 cut(s)	6, 409, 487, 914, 1256, 1739, 2051
BmsI	GCATC	4 cut(s)	526, 835, 1540, 1743
BoxI	GACNNNNGTC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	1282
BpmI	CTGGAG	2 cut(s)	269, 2072
Bpu10I	CCTNAGC	4 cut(s)	824, 1133, 1767, 1821
Bpu1102I	GCTNAGC	2 cut(s)	675, 1563
BpuEI	CTTGAG	6 cut(s)	1058, 1205, 1301, 1865, 1928, 1992
BpuMI	CCSGG	5 cut(s)	6, 409, 487, 1256, 1739
BsaBI	GATNNNNATC	1 cut(s)	954
BsaJI	CCNNGG	6 cut(s)	429, 518, 1608, 1687, 1779, 1809
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	6 cut(s)	221, 251, 568, 598, 1367, 1397
Bsc4I	CCNNNNNNNGG	7 cut(s)	166, 226, 653, 919, 1078, 1203, 1693
Bse118I	RCCGGY	2 cut(s)	194, 442
Bse1I	ACTGG	3 cut(s)	582, 1658, 1681
Bse3DI	GCAATG	3 cut(s)	768, 1578, 2173
Bse8I	GATNNNNATC	1 cut(s)	954
BseBI	CCWGG	2 cut(s)	914, 2051
BseDI	CCNNGG	6 cut(s)	429, 518, 1608, 1687, 1779, 1809
BseGI	GGATG	8 cut(s)	361, 495, 850, 1143, 1626, 1669, 1734, 1897
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	7 cut(s)	166, 226, 653, 919, 1078, 1203, 1693
BseMI	GCAATG	3 cut(s)	768, 1578, 2173
BseMII	CTCAG	9 cut(s)	59, 204, 666, 838, 1124, 1319, 1503, 1554, 1812
BseNI	ACTGG	3 cut(s)	582, 1658, 1681
BseRI	GAGGAG	5 cut(s)	15, 242, 485, 1163, 1460
BseSI	GKGCMC	2 cut(s)	339, 1072
BseXI	GCAGC	8 cut(s)	489, 517, 782, 1078, 1277, 1787, 2016, 2066
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	8 cut(s)	135, 170, 178, 485, 517, 581, 1070, 1613
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	2 cut(s)	2143, 2218
BsiSI	CCGG	8 cut(s)	6, 195, 408, 443, 486, 599, 1255, 1739
BslFI	GGGAC	1 cut(s)	690
BslI	CCNNNNNNNGG	7 cut(s)	166, 226, 653, 919, 1078, 1203, 1693
BsmAI	GTCTC	1 cut(s)	1145
BsmFI	GGGAC	1 cut(s)	690
BsmI	GAATGC	2 cut(s)	1297, 2096
BsnI	GGCC	8 cut(s)	135, 170, 178, 485, 517, 581, 1070, 1613
Bsp120I	GGGCCC	1 cut(s)	1068
Bsp1286I	GDGCHC	4 cut(s)	339, 1072, 2143, 2218
Bsp143I	GATC	6 cut(s)	84, 562, 988, 1111, 1498, 1894
Bsp1720I	GCTNAGC	2 cut(s)	675, 1563
Bsp68I	TCGCGA	1 cut(s)	113
BspACI	CCGC	6 cut(s)	56, 74, 77, 348, 610, 812
BspANI	GGCC	8 cut(s)	135, 170, 178, 485, 517, 581, 1070, 1613
BspCNI	CTCAG	9 cut(s)	58, 205, 667, 837, 1125, 1320, 1504, 1555, 1813
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	1108
BspLI	GGNNCC	4 cut(s)	10, 441, 1070, 1713
BspMAI	CTGCAG	2 cut(s)	507, 2065
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	1 cut(s)	1506
BspQI	GCTCTTC	1 cut(s)	2185
BsrDI	GCAATG	3 cut(s)	768, 1578, 2173
BsrFI	RCCGGY	2 cut(s)	194, 442
BsrI	ACTGG	3 cut(s)	582, 1658, 1681
BssAI	RCCGGY	2 cut(s)	194, 442
BssECI	CCNNGG	6 cut(s)	429, 518, 1608, 1687, 1779, 1809
BssMI	GATC	6 cut(s)	84, 562, 988, 1111, 1498, 1894
BssSI	CACGAG	1 cut(s)	835
BssT1I	CCWWGG	4 cut(s)	1608, 1687, 1779, 1809
Bst2BI	CACGAG	1 cut(s)	835
Bst2UI	CCWGG	2 cut(s)	914, 2051
Bst4CI	ACNGT	2 cut(s)	798, 1479
Bst6I	CTCTTC	7 cut(s)	743, 885, 1196, 1385, 1428, 1965, 2185
BstAPI	GCANNNNNTGC	2 cut(s)	767, 2100
BstC8I	GCNNGC	4 cut(s)	483, 816, 1089, 1569
BstEII	GGTNACC	1 cut(s)	1579
BstF5I	GGATG	8 cut(s)	361, 495, 850, 1143, 1626, 1669, 1734, 1897
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	5 cut(s)	850, 1059, 1857, 1942, 2159
BstKTI	GATC	6 cut(s)	87, 565, 991, 1114, 1501, 1897
BstMAI	GTCTC	1 cut(s)	1145
BstMBI	GATC	6 cut(s)	84, 562, 988, 1111, 1498, 1894
BstMCI	CGRYCG	1 cut(s)	87
BstNI	CCWGG	2 cut(s)	914, 2051
BstPAI	GACNNNNGTC	1 cut(s)	86
BstPI	GGTNACC	1 cut(s)	1579
BstSCI	CCNGG	7 cut(s)	4, 407, 485, 912, 1254, 1737, 2049
BstSFI	CTRYAG	2 cut(s)	503, 2061
BstSLI	GKGCMC	2 cut(s)	339, 1072
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	8 cut(s)	489, 517, 782, 1078, 1277, 1787, 2016, 2066
BstV2I	GAAGAC	1 cut(s)	1282
BstXI	CCANNNNNNTGG	1 cut(s)	589
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	8 cut(s)	135, 170, 178, 485, 517, 581, 1070, 1613
BtgZI	GCGATG	1 cut(s)	432
BtrI	CACGTC	1 cut(s)	1925
BtsCI	GGATG	8 cut(s)	361, 495, 850, 1143, 1626, 1669, 1734, 1897
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	2 cut(s)	210, 337
BtuMI	TCGCGA	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	4 cut(s)	483, 816, 1089, 1569
CciI	TCATGA	1 cut(s)	1108
CfoI	GCGC	5 cut(s)	850, 1059, 1857, 1942, 2159
Cfr10I	RCCGGY	2 cut(s)	194, 442
Cfr13I	GGNCC	9 cut(s)	133, 169, 177, 217, 304, 579, 1068, 1069, 1252
CseI	GACGC	1 cut(s)	1323
Csp6I	GTAC	1 cut(s)	585
CviQI	GTAC	1 cut(s)	585
DpnI	GATC	6 cut(s)	86, 564, 990, 1113, 1500, 1896
DpnII	GATC	6 cut(s)	84, 562, 988, 1111, 1498, 1894
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	7 cut(s)	743, 885, 1196, 1385, 1428, 1965, 2185
EarI	CTCTTC	7 cut(s)	743, 885, 1196, 1385, 1428, 1965, 2185
Ecl136II	GAGCTC	1 cut(s)	2216
Eco130I	CCWWGG	4 cut(s)	1608, 1687, 1779, 1809
Eco24I	GRGCYC	2 cut(s)	1072, 2218
Eco32I	GATATC	1 cut(s)	1624
Eco47I	GGWCC	3 cut(s)	217, 304, 1252
Eco53kI	GAGCTC	1 cut(s)	2216
Eco57I	CTGAAG	4 cut(s)	888, 909, 1409, 1506
Eco91I	GGTNACC	1 cut(s)	1579
EcoICRI	GAGCTC	1 cut(s)	2216
EcoO109I	RGGNCCY	1 cut(s)	304
EcoO65I	GGTNACC	1 cut(s)	1579
EcoRI	GAATTC	3 cut(s)	424, 2056, 2232
EcoRII	CCWGG	2 cut(s)	912, 2049
EcoRV	GATATC	1 cut(s)	1624
EcoT14I	CCWWGG	4 cut(s)	1608, 1687, 1779, 1809
EcoT22I	ATGCAT	2 cut(s)	2096, 2105
EcoT38I	GRGCYC	2 cut(s)	1072, 2218
ErhI	CCWWGG	4 cut(s)	1608, 1687, 1779, 1809
FalI	AAGNNNNNCTT	2 cut(s)	2182, 2214
FaqI	GGGAC	1 cut(s)	690
FauI	CCCGC	1 cut(s)	603
FauNDI	CATATG	1 cut(s)	1557
FblI	GTMKAC	1 cut(s)	1946
FokI	GGATG	8 cut(s)	368, 502, 857, 1150, 1613, 1676, 1721, 1904
FriOI	GRGCYC	2 cut(s)	1072, 2218
FspBI	CTAG	2 cut(s)	281, 1239
FspI	TGCGCA	1 cut(s)	1941
GlaI	GCGC	5 cut(s)	849, 1058, 1856, 1941, 2158
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	2 cut(s)	269, 2072
HaeIII	GGCC	8 cut(s)	135, 170, 178, 485, 517, 581, 1070, 1613
HapII	CCGG	8 cut(s)	6, 195, 408, 443, 486, 599, 1255, 1739
HgaI	GACGC	1 cut(s)	1323
HhaI	GCGC	5 cut(s)	850, 1059, 1857, 1942, 2159
Hin6I	GCGC	5 cut(s)	848, 1057, 1855, 1940, 2157
HinP1I	GCGC	5 cut(s)	848, 1057, 1855, 1940, 2157
HincII	GTYRAC	3 cut(s)	363, 925, 1348
HindII	GTYRAC	3 cut(s)	363, 925, 1348
HindIII	AAGCTT	2 cut(s)	1100, 1841
HpaI	GTTAAC	1 cut(s)	925
HpaII	CCGG	8 cut(s)	6, 195, 408, 443, 486, 599, 1255, 1739
HphI	GGTGA	6 cut(s)	26, 545, 1015, 1591, 1753, 1771
Hpy166II	GTNNAC	6 cut(s)	363, 925, 1252, 1348, 1792, 1947
Hpy188III	TCNNGA	8 cut(s)	112, 248, 835, 947, 959, 1109, 1184, 2036
Hpy8I	GTNNAC	6 cut(s)	363, 925, 1252, 1348, 1792, 1947
Hpy99I	CGWCG	4 cut(s)	85, 92, 191, 302
HpyAV	CCTTC	5 cut(s)	154, 738, 1045, 1072, 1756
HpyCH4III	ACNGT	2 cut(s)	798, 1479
HpyCH4IV	ACGT	3 cut(s)	1681, 1882, 1924
HpySE526I	ACGT	3 cut(s)	1681, 1882, 1924
HspAI	GCGC	5 cut(s)	848, 1057, 1855, 1940, 2157
KspAI	GTTAAC	1 cut(s)	925
Kzo9I	GATC	6 cut(s)	84, 562, 988, 1111, 1498, 1894
LguI	GCTCTTC	1 cut(s)	2185
LmnI	GCTCC	6 cut(s)	14, 229, 439, 1054, 1698, 2221
Lsp1109I	GCAGC	8 cut(s)	489, 517, 782, 1078, 1277, 1787, 2016, 2066
LweI	GCATC	4 cut(s)	526, 835, 1540, 1743
MaeI	CTAG	2 cut(s)	281, 1239
MaeII	ACGT	3 cut(s)	1681, 1882, 1924
MaeIII	GTNAC	9 cut(s)	293, 798, 894, 1009, 1579, 1597, 1666, 1682, 1883
MalI	GATC	6 cut(s)	86, 564, 990, 1113, 1500, 1896
MboI	GATC	6 cut(s)	84, 562, 988, 1111, 1498, 1894
MfeI	CAATTG	3 cut(s)	221, 2019, 2220
MhlI	GDGCHC	4 cut(s)	339, 1072, 2143, 2218
MlyI	GAGTC	5 cut(s)	43, 902, 1147, 1349, 1523
MmeI	TCCRAC	4 cut(s)	210, 447, 835, 1903
Mph1103I	ATGCAT	2 cut(s)	2096, 2105
MseI	TTAA	4 cut(s)	717, 924, 1029, 1125
MslI	CAYNNNNRTG	5 cut(s)	342, 356, 1196, 1739, 1890
MspA1I	CMGCKG	4 cut(s)	773, 1268, 1820, 2079
MspI	CCGG	8 cut(s)	6, 195, 408, 443, 486, 599, 1255, 1739
MspR9I	CCNGG	7 cut(s)	6, 409, 487, 914, 1256, 1739, 2051
MunI	CAATTG	3 cut(s)	221, 2019, 2220
Mva1269I	GAATGC	2 cut(s)	1297, 2096
MvaI	CCWGG	2 cut(s)	914, 2051
MvnI	CGCG	1 cut(s)	113
NciI	CCSGG	5 cut(s)	6, 409, 487, 1256, 1739
NdeI	CATATG	1 cut(s)	1557
NdeII	GATC	6 cut(s)	84, 562, 988, 1111, 1498, 1894
NlaIV	GGNNCC	4 cut(s)	10, 441, 1070, 1713
NmeAIII	GCCGAG	2 cut(s)	543, 2237
NmuCI	GTSAC	4 cut(s)	894, 1579, 1666, 1883
NruI	TCGCGA	1 cut(s)	113
NsbI	TGCGCA	1 cut(s)	1941
NsiI	ATGCAT	2 cut(s)	2096, 2105
PagI	TCATGA	1 cut(s)	1108
PciSI	GCTCTTC	1 cut(s)	2185
PctI	GAATGC	2 cut(s)	1297, 2096
PfeI	GAWTC	7 cut(s)	95, 128, 244, 434, 595, 955, 1986
PflMI	CCANNNNNTGG	1 cut(s)	919
PfoI	TCCNGGA	1 cut(s)	407
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	5 cut(s)	43, 901, 1147, 1348, 1522
PpsI	GAGTC	5 cut(s)	43, 901, 1147, 1348, 1522
PpuMI	RGGWCCY	1 cut(s)	304
PshAI	GACNNNNGTC	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	2218
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	912, 2049
PspEI	GGTNACC	1 cut(s)	1579
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	2 cut(s)	912, 2049
PspN4I	GGNNCC	4 cut(s)	10, 441, 1070, 1713
PspOMI	GGGCCC	1 cut(s)	1068
PspPI	GGNCC	9 cut(s)	133, 169, 177, 217, 304, 579, 1068, 1069, 1252
PspPPI	RGGWCCY	1 cut(s)	304
PstI	CTGCAG	2 cut(s)	507, 2065
PvuI	CGATCG	1 cut(s)	87
PvuII	CAGCTG	4 cut(s)	773, 1268, 1820, 2079
RruI	TCGCGA	1 cut(s)	113
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	5 cut(s)	342, 356, 1196, 1739, 1890
SacI	GAGCTC	1 cut(s)	2218
SapI	GCTCTTC	1 cut(s)	2185
SaqAI	TTAA	4 cut(s)	717, 924, 1029, 1125
Sau3AI	GATC	6 cut(s)	84, 562, 988, 1111, 1498, 1894
Sau96I	GGNCC	9 cut(s)	133, 169, 177, 217, 304, 579, 1068, 1069, 1252
ScaI	AGTACT	1 cut(s)	586
SchI	GAGTC	5 cut(s)	43, 902, 1147, 1349, 1523
ScrFI	CCNGG	7 cut(s)	6, 409, 487, 914, 1256, 1739, 2051
SduI	GDGCHC	4 cut(s)	339, 1072, 2143, 2218
SfaNI	GCATC	4 cut(s)	526, 835, 1540, 1743
SfcI	CTRYAG	2 cut(s)	503, 2061
SinI	GGWCC	3 cut(s)	217, 304, 1252
SmiMI	CAYNNNNRTG	5 cut(s)	342, 356, 1196, 1739, 1890
SmlI	CTYRAG	6 cut(s)	1037, 1184, 1280, 1844, 1907, 2007
SmoI	CTYRAG	6 cut(s)	1037, 1184, 1280, 1844, 1907, 2007
SsiI	CCGC	6 cut(s)	56, 74, 77, 348, 610, 812
SspMI	CTAG	2 cut(s)	281, 1239
SstI	GAGCTC	1 cut(s)	2218
StyD4I	CCNGG	7 cut(s)	4, 407, 485, 912, 1254, 1737, 2049
StyI	CCWWGG	4 cut(s)	1608, 1687, 1779, 1809
TaaI	ACNGT	2 cut(s)	798, 1479
TaiI	ACGT	3 cut(s)	1684, 1885, 1927
TaqI	TCGA	1 cut(s)	781
TatI	WGTACW	1 cut(s)	584
TauI	GCSGC	2 cut(s)	79, 351
TfiI	GAWTC	7 cut(s)	95, 128, 244, 434, 595, 955, 1986
Tru1I	TTAA	4 cut(s)	717, 924, 1029, 1125
Tru9I	TTAA	4 cut(s)	717, 924, 1029, 1125
TscAI	CASTG	2 cut(s)	217, 344
TseFI	GTSAC	4 cut(s)	894, 1579, 1666, 1883
TseI	GCWGC	8 cut(s)	502, 505, 770, 1091, 1265, 1775, 2029, 2079
Tsp45I	GTSAC	4 cut(s)	894, 1579, 1666, 1883
TspDTI	ATGAA	8 cut(s)	557, 594, 641, 749, 1010, 1214, 2120, 2127
TspRI	CASTG	2 cut(s)	217, 344
Van91I	CCANNNNNTGG	1 cut(s)	919
VpaK11BI	GGWCC	3 cut(s)	217, 304, 1252
XapI	RAATTY	5 cut(s)	424, 941, 967, 2056, 2232
XmiI	GTMKAC	1 cut(s)	1946
XspI	CTAG	2 cut(s)	281, 1239
ZrmI	AGTACT	1 cut(s)	586
Zsp2I	ATGCAT	2 cut(s)	2096, 2105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.