Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010123

Physical Location & Seq

Genomic Coordinates Reverse (-)

26059437 .. 26065867

Gene Structure 6431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG251100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGGGTTGCACTGTGAGAGAGAAGCACGTCCGAACGAATCGGAGGATCCGATCCGTGAAAACCGATTTCGAGCATTGCTGCTACGTCGAGAGAGCCTCAATCGCGAAATCGGTGCTCGAATCGGGCCTCAAACCCTTCAATACTCAAAACCCTAATTCGGCCCAGAGGCCCAATTCCGACGAGACCGGCTGGGGCTACTGCACTGAGGACCAATTGGAGGAGCTTCTGTTGAAGAATCTCGAGTTTCTCTACAATGAGGCGATTTCCAAGCTAGTTGCGTTGGGTTACGACGAGGACCTTGCCCTCAAAGCCATTTTGAGAAATGGGCACTGCTATGGCGGCATGGATGTCTTGACTAACATCATGCACAACTCGTTGGCTTATTTGAATGCTAGTTCCGGGAGTGGTGATGGGAATTCCGAGGATTCGGAGCCCGTTTTCGCTGATTTGAGGCAGTTGGAGGAGTATTCGCTGGCCGGGATGGTGTGTATGTTGCAGCAGGTTAGGCCCAGGTTGAGTAAAGGTGATGCCATGTGGTGTTTGCTAATGAGTGATCTTCATGTGGGGAGGGCAAGTACTATGGAGATTCCGGTGCTTCCTAGTGCGGGGAATGAGGGTAGTGCTGCCGCGGCCAGTAATGTGGAGAGTGGGGGTAATGGGAGCCATTCGGTTGGTGTCATGGCCCCGGCGCTTTGCAGGTTTCATGGCGGGTGGGGTTTTGGCAATGGGGGGAGTTCGGAGTTTCCTGTTCATGGGTTTTTGTCATATGGTGCTGAGCTGACTTTACAGAGGGATATTGAGTGTCCCAAGAGGTTTAATCTTTCGCCTTCAATGAAGTCATTGTTGAAGAGGAATGTAGCGATGTTTGCAGCTGGTTTTCGAGCAAACTCCAAACAGTTACATTCTCAACCGCAGGCTTCCCTCAGCAGTTTGACGAGTGGGGATGCGCTGGTTGCATTGGGGGCTGAAGTTGCAGTCCAGCAATCTGAAGAGTCACAGAAGTCAAAGAACCAGGAGGTGGTTAATTCGGTGTTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAACTTGTAGGGGAAGATCAAAAGAATGAGGTGATAGTAACTTTACTTCATCAGGTTAAAGAGCTTGAGAAGCAAGTGAAGGAGCGCAAGGAGTGGGCCCACCAGAAGGCTATGCAAGCTGCAAAAAAGCTTAGTCATGATCTGACAGAGCTTAAAATGCTGAGGATGGAAAGAGAGGAGACTCAAAGGTTGAAGAAAGGGAAACAAACTCTTGAGGACACAACCATGAAGAGGCTCTCCGAGATGGAAAACGCTCTAAGAAAGGCTAGTGGTCAAGTGGACCGGGCAAATGCAGCTGTTAGAAGACTTGAAAATGAGAATGCAGAAATCAGAGCAGAGATGGAGGCTTCTAAACTGAGTGCGTCAGAGTCAGTCAACACCTGTTTAGAGGTTGCAAAGAGGGAGAAAAAGTGCCTGAAGAGGCTTTTGGCTTGGGAGAAGCAAAAAGGTAAGTTGCAGGAAGAGATTGGAGAGGAGAAACAGAAGATTTCAGAATTGCAACAACAGTTAGCTCGTATCAAGCAGGATCAGAAAGAAGCTGAGGTGAAATGGAAGCAAGAGGTGAAGGCTAAGGAGGCAGCCTTGGCACAAGTGGACGAGGAAAGAGTTGCCAAGGAAACAGCTGAGGCTGGTAATAAACGAAAGCTTGAGGCTTTGCGCCTAAAGATAGAAATAGATTTCCAACGTCACAAGGATGATCTCCAAAGACTTGAGCAAGAACTCTCACGTCTAAAATCATCTGCGCAGTCTACCGAATTGCCTCTTCCATCAAATGCTTTGCCAAGAGGAATCTCTGGTGGTGCAAAACCTCAAGGAGAAACAATTGCCAAGCTGCTTCGTGAATTAGATAACCTGGAGAATTCTGCAGAGAAAGAAGTCAGCTGCGATAGAGAATGCATGATATGCATGAAAGATGAAGTGTCTGTTGTTTTCCTTCCCTGTGCTCATCAAGTTCTCTGCGCTAATTGCAATGATGATTATGGCAAGAAAGGTAGAGCTACTTGCCCATGTTGCCGAGCTCCAATTGAACATAGAATTCGTGTTTTTGGTGCAAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

710

Amino Acids

78.97

Weight (kDa)

6.62

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	79 - 194	1.4e-26	PIR2-like, helical domain
zf-C3HC4_3	PF13920	653 - 701	8.9e-12	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35330 AT2G35330
fragaria_vesca	FvH4_5g21710 FvH4_5g21710
malus_domestica	MD06G1032100.v1.1
prunus_persica	Prupe.5G040000_v2.0.a1 Prupe.5G040000_v2.0.a1
pyrus_communis	pycom06g02660
rosa_chinensis	RchiOBHm_Chr7g0209211
rosa_laevigata	RLG00000003157
rosa_multiflora	Rmu_sc0001701.1_g000007 Rmu_sc0031054.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249630
rosa_rugosa	Rorug07G0110200 Rorug07G0110300 Rorug07G0110400
rosa_samantha	Rh7AG244300 Rh7BG239500 Rh7CG259800 Rh7DG251100
rosa_wichuraiana	Rw7G020720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1815
Acc36I	ACCTGC	2 cut(s)	490, 687
AccB7I	CCANNNNNTGG	1 cut(s)	1018
AccI	GTMKAC	1 cut(s)	1820
AccII	CGCG	2 cut(s)	104, 629
AciI	CCGC	6 cut(s)	339, 605, 627, 629, 708, 911
AclWI	GGATC	4 cut(s)	40, 45, 53, 1605
AcoI	YGGCCR	2 cut(s)	474, 630
AcsI	RAATTY	5 cut(s)	415, 1040, 1066, 1930, 2106
AcuI	CTGAAG	3 cut(s)	987, 1008, 1508
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	7 cut(s)	157, 217, 605, 752, 1018, 1177, 1302
AgsI	TTSAA	9 cut(s)	139, 232, 388, 831, 847, 1054, 1264, 1382, 2099
AjiI	CACGTC	2 cut(s)	28, 1799
AjnI	CCWGG	3 cut(s)	509, 1011, 1923
AjuI	GAANNNNNNNTTGG	2 cut(s)	1481, 1513
Alw21I	GWGCWC	3 cut(s)	117, 2017, 2092
Alw26I	GTCTC	2 cut(s)	176, 1244
AlwI	GGATC	4 cut(s)	40, 45, 53, 1605
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	8 cut(s)	124, 159, 167, 474, 506, 630, 681, 1167
ApaI	GGGCCC	1 cut(s)	1171
ApeKI	GCWGC	9 cut(s)	78, 496, 623, 869, 1190, 1364, 1649, 1903, 1953
ApoI	RAATTY	5 cut(s)	415, 1040, 1066, 1930, 2106
AspLEI	GCGC	6 cut(s)	691, 949, 1158, 1731, 1816, 2033
AsuC2I	CCSGG	4 cut(s)	400, 478, 686, 1355
AsuHPI	GGTGA	5 cut(s)	419, 536, 1114, 1627, 1645
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	3 cut(s)	208, 295, 1351
BaeGI	GKGCMC	2 cut(s)	330, 1171
BamHI	GGATCC	1 cut(s)	45
BanII	GRGCYC	3 cut(s)	435, 1171, 2092
BarI	GAAGNNNNNNTAC	2 cut(s)	1101, 1133
BbsI	GAAGAC	1 cut(s)	1381
Bbv12I	GWGCWC	3 cut(s)	117, 2017, 2092
BbvCI	CCTCAGC	4 cut(s)	923, 1232, 1611, 1695
BbvI	GCAGC	9 cut(s)	65, 508, 610, 881, 1177, 1376, 1661, 1890, 1940
BccI	CCATC	6 cut(s)	404, 475, 1231, 1309, 1405, 1846
BcgI	CGANNNNNNTGC	4 cut(s)	94, 128, 281, 315
BciT130I	CCWGG	3 cut(s)	511, 1013, 1925
BcnI	CCSGG	4 cut(s)	400, 478, 686, 1355
BcoDI	GTCTC	2 cut(s)	176, 1244
BfaI	CTAG	4 cut(s)	272, 393, 600, 1338
BfmI	CTRYAG	1 cut(s)	1935
BfoI	RGCGCY	1 cut(s)	692
BfuAI	ACCTGC	2 cut(s)	490, 687
BlpI	GCTNAGC	1 cut(s)	774
BmcAI	AGTACT	1 cut(s)	577
Bme1390I	CCNGG	7 cut(s)	400, 478, 511, 686, 1013, 1355, 1925
Bme18I	GGWCC	3 cut(s)	208, 295, 1351
BmeT110I	CYCGRG	1 cut(s)	239
BmgBI	CACGTC	2 cut(s)	28, 1799
BmiI	GGNNCC	5 cut(s)	47, 432, 662, 684, 1169
BmrFI	CCNGG	7 cut(s)	400, 478, 511, 686, 1013, 1355, 1925
BmsI	GCATC	2 cut(s)	517, 934
BpiI	GAAGAC	1 cut(s)	1381
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	1 cut(s)	1946
Bpu10I	CCTNAGC	5 cut(s)	923, 1232, 1611, 1641, 1695
Bpu1102I	GCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	5 cut(s)	1157, 1304, 1739, 1802, 1866
BpuMI	CCSGG	4 cut(s)	400, 478, 686, 1355
BsaBI	GATNNNNATC	1 cut(s)	1053
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	6 cut(s)	420, 509, 627, 684, 1653, 1683
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	6 cut(s)	212, 242, 559, 589, 1466, 1496
Bsc4I	CCNNNNNNNGG	7 cut(s)	157, 217, 605, 752, 1018, 1177, 1302
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	633
Bse3DI	GCAATG	3 cut(s)	73, 730, 2047
Bse8I	GATNNNNATC	1 cut(s)	1053
BseBI	CCWGG	3 cut(s)	511, 1013, 1925
BseDI	CCNNGG	6 cut(s)	420, 509, 627, 684, 1653, 1683
BseGI	GGATG	5 cut(s)	352, 486, 949, 1242, 1771
BseJI	GATNNNNATC	1 cut(s)	1053
BseLI	CCNNNNNNNGG	7 cut(s)	157, 217, 605, 752, 1018, 1177, 1302
BseMI	GCAATG	3 cut(s)	73, 730, 2047
BseMII	CTCAG	7 cut(s)	195, 765, 937, 1223, 1418, 1602, 1686
BseNI	ACTGG	1 cut(s)	633
BseRI	GAGGAG	4 cut(s)	233, 476, 1262, 1559
BseSI	GKGCMC	2 cut(s)	330, 1171
BseXI	GCAGC	9 cut(s)	65, 508, 610, 881, 1177, 1376, 1661, 1890, 1940
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	104, 629
BshFI	GGCC	8 cut(s)	126, 161, 169, 476, 508, 632, 683, 1169
BsiHKAI	GWGCWC	3 cut(s)	117, 2017, 2092
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	6 cut(s)	186, 399, 477, 590, 686, 1354
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	7 cut(s)	157, 217, 605, 752, 1018, 1177, 1302
BsmAI	GTCTC	2 cut(s)	176, 1244
BsmFI	GGGAC	1 cut(s)	789
BsmI	GAATGC	3 cut(s)	394, 1396, 1970
BsnI	GGCC	8 cut(s)	126, 161, 169, 476, 508, 632, 683, 1169
Bso31I	GGTCTC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	239
Bsp120I	GGGCCC	1 cut(s)	1167
Bsp1286I	GDGCHC	6 cut(s)	117, 330, 435, 1171, 2017, 2092
Bsp143I	GATC	7 cut(s)	45, 50, 553, 1087, 1210, 1597, 1768
Bsp1720I	GCTNAGC	1 cut(s)	774
Bsp68I	TCGCGA	1 cut(s)	104
BspACI	CCGC	6 cut(s)	339, 605, 627, 629, 708, 911
BspANI	GGCC	8 cut(s)	126, 161, 169, 476, 508, 632, 683, 1169
BspCNI	CTCAG	7 cut(s)	196, 766, 936, 1224, 1419, 1603, 1687
BspFNI	CGCG	2 cut(s)	104, 629
BspHI	TCATGA	1 cut(s)	1207
BspLI	GGNNCC	5 cut(s)	47, 432, 662, 684, 1169
BspMAI	CTGCAG	1 cut(s)	1939
BspMI	ACCTGC	2 cut(s)	490, 687
BspPI	GGATC	4 cut(s)	40, 45, 53, 1605
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	3 cut(s)	73, 730, 2047
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	633
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	6 cut(s)	420, 509, 627, 684, 1653, 1683
BssMI	GATC	7 cut(s)	45, 50, 553, 1087, 1210, 1597, 1768
BssT1I	CCWWGG	2 cut(s)	1653, 1683
Bst2UI	CCWGG	3 cut(s)	511, 1013, 1925
Bst4CI	ACNGT	3 cut(s)	13, 897, 1578
Bst6I	CTCTTC	6 cut(s)	842, 984, 1295, 1484, 1527, 1839
BstAPI	GCANNNNNTGC	1 cut(s)	1974
BstC8I	GCNNGC	3 cut(s)	474, 915, 1188
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	5 cut(s)	352, 486, 949, 1242, 1771
BstFNI	CGCG	2 cut(s)	104, 629
BstH2I	RGCGCY	1 cut(s)	692
BstHHI	GCGC	6 cut(s)	691, 949, 1158, 1731, 1816, 2033
BstKTI	GATC	7 cut(s)	48, 53, 556, 1090, 1213, 1600, 1771
BstMAI	GTCTC	2 cut(s)	176, 1244
BstMBI	GATC	7 cut(s)	45, 50, 553, 1087, 1210, 1597, 1768
BstNI	CCWGG	3 cut(s)	511, 1013, 1925
BstSCI	CCNGG	7 cut(s)	398, 476, 509, 684, 1011, 1353, 1923
BstSFI	CTRYAG	1 cut(s)	1935
BstSLI	GKGCMC	2 cut(s)	330, 1171
BstUI	CGCG	2 cut(s)	104, 629
BstV1I	GCAGC	9 cut(s)	65, 508, 610, 881, 1177, 1376, 1661, 1890, 1940
BstV2I	GAAGAC	1 cut(s)	1381
BstX2I	RGATCY	1 cut(s)	45
BstXI	CCANNNNNNTGG	2 cut(s)	640, 671
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	8 cut(s)	126, 161, 169, 476, 508, 632, 683, 1169
BtgI	CCRYGG	1 cut(s)	627
BtgZI	GCGATG	1 cut(s)	875
BtrI	CACGTC	2 cut(s)	28, 1799
BtsCI	GGATG	5 cut(s)	352, 486, 949, 1242, 1771
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	9, 201, 328
BtuMI	TCGCGA	1 cut(s)	104
BveI	ACCTGC	2 cut(s)	490, 687
Cac8I	GCNNGC	3 cut(s)	474, 915, 1188
CciI	TCATGA	1 cut(s)	1207
CfoI	GCGC	6 cut(s)	691, 949, 1158, 1731, 1816, 2033
Cfr10I	RCCGGY	1 cut(s)	185
Cfr42I	CCGCGG	1 cut(s)	630
CseI	GACGC	1 cut(s)	1422
Csp6I	GTAC	1 cut(s)	576
CviQI	GTAC	1 cut(s)	576
DpnI	GATC	7 cut(s)	47, 52, 555, 1089, 1212, 1599, 1770
DpnII	GATC	7 cut(s)	45, 50, 553, 1087, 1210, 1597, 1768
EaeI	YGGCCR	2 cut(s)	474, 630
Eam1104I	CTCTTC	6 cut(s)	842, 984, 1295, 1484, 1527, 1839
EarI	CTCTTC	6 cut(s)	842, 984, 1295, 1484, 1527, 1839
Ecl136II	GAGCTC	1 cut(s)	2090
Eco130I	CCWWGG	2 cut(s)	1653, 1683
Eco24I	GRGCYC	3 cut(s)	435, 1171, 2092
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	3 cut(s)	208, 295, 1351
Eco53kI	GAGCTC	1 cut(s)	2090
Eco57I	CTGAAG	3 cut(s)	987, 1008, 1508
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	2090
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRI	GAATTC	3 cut(s)	415, 1930, 2106
EcoRII	CCWGG	3 cut(s)	509, 1011, 1923
EcoT14I	CCWWGG	2 cut(s)	1653, 1683
EcoT22I	ATGCAT	2 cut(s)	1970, 1979
EcoT38I	GRGCYC	3 cut(s)	435, 1171, 2092
ErhI	CCWWGG	2 cut(s)	1653, 1683
FaqI	GGGAC	1 cut(s)	789
FauI	CCCGC	2 cut(s)	598, 701
FauNDI	CATATG	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	1820
FokI	GGATG	5 cut(s)	359, 493, 956, 1249, 1778
FriOI	GRGCYC	3 cut(s)	435, 1171, 2092
FspBI	CTAG	4 cut(s)	272, 393, 600, 1338
FspI	TGCGCA	1 cut(s)	1815
GlaI	GCGC	6 cut(s)	690, 948, 1157, 1730, 1815, 2032
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	1946
HaeII	RGCGCY	1 cut(s)	692
HaeIII	GGCC	8 cut(s)	126, 161, 169, 476, 508, 632, 683, 1169
HapII	CCGG	6 cut(s)	186, 399, 477, 590, 686, 1354
HgaI	GACGC	1 cut(s)	1422
HhaI	GCGC	6 cut(s)	691, 949, 1158, 1731, 1816, 2033
Hin6I	GCGC	6 cut(s)	689, 947, 1156, 1729, 1814, 2031
HinP1I	GCGC	6 cut(s)	689, 947, 1156, 1729, 1814, 2031
HincII	GTYRAC	1 cut(s)	1447
HindII	GTYRAC	1 cut(s)	1447
HindIII	AAGCTT	2 cut(s)	1199, 1715
HpaII	CCGG	6 cut(s)	186, 399, 477, 590, 686, 1354
HphI	GGTGA	5 cut(s)	419, 536, 1114, 1627, 1645
Hpy166II	GTNNAC	4 cut(s)	1351, 1447, 1666, 1821
Hpy188III	TCNNGA	9 cut(s)	88, 103, 239, 352, 1046, 1058, 1208, 1283, 1910
Hpy8I	GTNNAC	4 cut(s)	1351, 1447, 1666, 1821
Hpy99I	CGWCG	3 cut(s)	89, 182, 293
HpyAV	CCTTC	6 cut(s)	145, 837, 1144, 1171, 1630, 2015
HpyCH4III	ACNGT	3 cut(s)	13, 897, 1578
HpyCH4IV	ACGT	4 cut(s)	27, 84, 1756, 1798
HpySE526I	ACGT	4 cut(s)	27, 84, 1756, 1798
HspAI	GCGC	6 cut(s)	689, 947, 1156, 1729, 1814, 2031
KspI	CCGCGG	1 cut(s)	630
Kzo9I	GATC	7 cut(s)	45, 50, 553, 1087, 1210, 1597, 1768
LmnI	GCTCC	5 cut(s)	220, 430, 660, 1153, 2095
Lsp1109I	GCAGC	9 cut(s)	65, 508, 610, 881, 1177, 1376, 1661, 1890, 1940
LweI	GCATC	2 cut(s)	517, 934
MaeI	CTAG	4 cut(s)	272, 393, 600, 1338
MaeII	ACGT	4 cut(s)	27, 84, 1756, 1798
MaeIII	GTNAC	5 cut(s)	284, 897, 993, 1108, 1757
MalI	GATC	7 cut(s)	47, 52, 555, 1089, 1212, 1599, 1770
MboI	GATC	7 cut(s)	45, 50, 553, 1087, 1210, 1597, 1768
MfeI	CAATTG	3 cut(s)	212, 1893, 2094
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	6 cut(s)	117, 330, 435, 1171, 2017, 2092
MlyI	GAGTC	3 cut(s)	1001, 1246, 1448
MmeI	TCCRAC	3 cut(s)	201, 438, 1777
Mph1103I	ATGCAT	2 cut(s)	1970, 1979
MseI	TTAA	4 cut(s)	816, 1023, 1128, 1224
MslI	CAYNNNNRTG	3 cut(s)	333, 1295, 1764
MspA1I	CMGCKG	5 cut(s)	629, 872, 1367, 1694, 1953
MspI	CCGG	6 cut(s)	186, 399, 477, 590, 686, 1354
MspR9I	CCNGG	7 cut(s)	400, 478, 511, 686, 1013, 1355, 1925
MunI	CAATTG	3 cut(s)	212, 1893, 2094
Mva1269I	GAATGC	3 cut(s)	394, 1396, 1970
MvaI	CCWGG	3 cut(s)	511, 1013, 1925
MvnI	CGCG	2 cut(s)	104, 629
NciI	CCSGG	4 cut(s)	400, 478, 686, 1355
NdeI	CATATG	1 cut(s)	766
NdeII	GATC	7 cut(s)	45, 50, 553, 1087, 1210, 1597, 1768
NlaIV	GGNNCC	5 cut(s)	47, 432, 662, 684, 1169
NmeAIII	GCCGAG	1 cut(s)	2111
NmuCI	GTSAC	2 cut(s)	993, 1757
NruI	TCGCGA	1 cut(s)	104
NsbI	TGCGCA	1 cut(s)	1815
NsiI	ATGCAT	2 cut(s)	1970, 1979
PaeR7I	CTCGAG	1 cut(s)	239
PagI	TCATGA	1 cut(s)	1207
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PctI	GAATGC	3 cut(s)	394, 1396, 1970
PfeI	GAWTC	7 cut(s)	37, 119, 235, 425, 586, 1054, 1860
PflMI	CCANNNNNTGG	1 cut(s)	1018
PfoI	TCCNGGA	1 cut(s)	398
PleI	GAGTC	3 cut(s)	1000, 1246, 1447
PpsI	GAGTC	3 cut(s)	1000, 1246, 1447
PpuMI	RGGWCCY	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	2092
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	3 cut(s)	509, 1011, 1923
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	3 cut(s)	509, 1011, 1923
PspN4I	GGNNCC	5 cut(s)	47, 432, 662, 684, 1169
PspOMI	GGGCCC	1 cut(s)	1167
PspPPI	RGGWCCY	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	1939
PsuI	RGATCY	1 cut(s)	45
PvuII	CAGCTG	4 cut(s)	872, 1367, 1694, 1953
RruI	TCGCGA	1 cut(s)	104
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
RseI	CAYNNNNRTG	3 cut(s)	333, 1295, 1764
SacI	GAGCTC	1 cut(s)	2092
SacII	CCGCGG	1 cut(s)	630
SaqAI	TTAA	4 cut(s)	816, 1023, 1128, 1224
Sau3AI	GATC	7 cut(s)	45, 50, 553, 1087, 1210, 1597, 1768
ScaI	AGTACT	1 cut(s)	577
SchI	GAGTC	3 cut(s)	1001, 1246, 1448
ScrFI	CCNGG	7 cut(s)	400, 478, 511, 686, 1013, 1355, 1925
SduI	GDGCHC	6 cut(s)	117, 330, 435, 1171, 2017, 2092
SfaNI	GCATC	2 cut(s)	517, 934
SfcI	CTRYAG	1 cut(s)	1935
Sfr274I	CTCGAG	1 cut(s)	239
Sfr303I	CCGCGG	1 cut(s)	630
SgrBI	CCGCGG	1 cut(s)	630
SinI	GGWCC	3 cut(s)	208, 295, 1351
SlaI	CTCGAG	1 cut(s)	239
SmiMI	CAYNNNNRTG	3 cut(s)	333, 1295, 1764
SmlI	CTYRAG	6 cut(s)	239, 1136, 1283, 1718, 1781, 1881
SmoI	CTYRAG	6 cut(s)	239, 1136, 1283, 1718, 1781, 1881
SsiI	CCGC	6 cut(s)	339, 605, 627, 629, 708, 911
SspMI	CTAG	4 cut(s)	272, 393, 600, 1338
SstI	GAGCTC	1 cut(s)	2092
StyD4I	CCNGG	7 cut(s)	398, 476, 509, 684, 1011, 1353, 1923
StyI	CCWWGG	2 cut(s)	1653, 1683
TaaI	ACNGT	3 cut(s)	13, 897, 1578
TaiI	ACGT	4 cut(s)	30, 87, 1759, 1801
TaqI	TCGA	5 cut(s)	69, 87, 117, 240, 880
TatI	WGTACW	1 cut(s)	575
TauI	GCSGC	3 cut(s)	342, 629, 632
TfiI	GAWTC	7 cut(s)	37, 119, 235, 425, 586, 1054, 1860
Tru1I	TTAA	4 cut(s)	816, 1023, 1128, 1224
Tru9I	TTAA	4 cut(s)	816, 1023, 1128, 1224
TscAI	CASTG	3 cut(s)	16, 208, 335
TseFI	GTSAC	2 cut(s)	993, 1757
TseI	GCWGC	9 cut(s)	78, 496, 623, 869, 1190, 1364, 1649, 1903, 1953
Tsp45I	GTSAC	2 cut(s)	993, 1757
TspDTI	ATGAA	8 cut(s)	548, 692, 740, 848, 1109, 1313, 1994, 2001
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	3 cut(s)	16, 208, 335
Van91I	CCANNNNNTGG	1 cut(s)	1018
VpaK11BI	GGWCC	3 cut(s)	208, 295, 1351
XapI	RAATTY	5 cut(s)	415, 1040, 1066, 1930, 2106
XhoI	CTCGAG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	1820
XspI	CTAG	4 cut(s)	272, 393, 600, 1338
ZrmI	AGTACT	1 cut(s)	577
Zsp2I	ATGCAT	2 cut(s)	1970, 1979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.