Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010123

Physical Location & Seq

Genomic Coordinates Reverse (-)

26563292 .. 26568829

Gene Structure 5538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2406 bp

ATGACCGGCCCAAAACCCGGCGGCCCTACCGAGTGGTGTTGTGGGTCCTCTAACACTCAACACCTAACAAAAAACAAAGAAAGAAAGAAGCTCTTGCATGCCCCCTCCCTCCTCCTCTCCTCTTGTTCTTCTTCCTCTTCATCACTTTCACCAACTCTCTCAGACTCCACCGCCACCACCACCACCACCAACCGCCGACGATCGTCGCCGATTCCATCTAGCTGTTTATATATATCTATACATATACACAGAGAGGCAGAGAGAGACACAAGAATGGGTTGCACTGTGAGAGAGAAGCACGTCCGAACGAATCGGAGGATCCGATCCGTGAAAACCGATTTCGAGCATTGCTGCTACGTCGAGAGAGCCTCAATCGCGAAATCGGTGCTCGAATCGGGCCTCAAACCCTTCAATACTCAAAACCCTAATTCGGCCCAGAGGCCCAATTCCGACGAGACCGGCTGGGGCTACTGCACTGAGGACCAATTGGAGGAGCTTCTGTTGAAGAATCTCGAGTTTCTCTACAATGAGGCGATTTCCAAGCTAGTTGCGTTGGGTTACGACGACGACCTCGCCCTCAAAGCCATTTTGAGAAATGGGCACTGCTACGGCGGCATGGATGTCTTGACTAACATCATGCACAACTCGTTGGCTTATTTGAATACTAGTTCCGGGAGTGGTGATGGGAATTCCGAGGATTCGGAGCCGGTTTTTGCTGATTTGAGGCAGTTGGAGGAGTATTCGCTGGCCGGGATGGTGTGTATGTTGCAGCAGGTTAGGCCGAGGTTGAGTAAAGGTGATGCCATGTGGTGTTTGCTAATGAGTGATCTTCATGTGGGGAGGGCGAGTACTATGGAGATTCCGGTGCTTCCTAGCGCGGGGAATGAGGGTAGTGCTGCTGCAGCTAGTAATGTGGAGAGTGGGGGCAATGGGAGCCATTCGGTTGGTGTCATGGCCCCGGCGCTTTGTAGGTTTCATGGCGGGTGGGGTTTTGGCAATGGGGGGAGTTCGGAGTTTCCTGTTCATGGGTTTTTGTCGTATGGTGCTGAGCTGACTTTACAGAGGGATATTGAGTGTCCCAAGAGGTTTAATCTTTCGCCTTCAATGAAGTCGTTGTTGAAGAGGAATGTAGCGATGTTTGCAGCTGGTTTTCGAGCAAACTCCAAACAGTTACATTCGCAACCGCAGGCTTCCCTCAGCAGTTTGACGAGTGGGGATGCGCTGGTTGCATTGGGGGCTGAAGTTGCAGTCCAGCAATCTGAAGAGTCACAGAAGTCAAAGAACCAGGAGGTGGTTAATTCGGTGTTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAACTTGTAGGGGAAGATCAAAAGAATGAGGTGATAGTAACTTTACTTCATCAGGTTAAAGAGCTTGAGAAGCAAGTGAAGGAGCGCAAGGAGTGGGCCCACCAGAAGGCTATGCAAGCTGCAAAAAAGCTTAGTCATGATCTGACAGAGCTTAAAATGCTGAGGATGGAAAGAGAGGAGACTCAAAGGTTGAAGAAAGGGAAACAAACTCTTGAGGACACGACCATGAAGAGGCTCTCCGAGATGGAAAATGCTCTAAGAAAGGCTAGTGGTCAAGTGGACCGGGCAAATGCAGCTGTTAGAAGACTTGAAAATGAGAATGCAGAAATTAGAGCAGAGATGGAGGCTTCTAAACTGAGTGCGTCAGAGTCAGTCAACACCTGTTTAGAGGTTGCAAAGAGGGAGAAAAAGTGCCTGAAGAGGCTTTTGGCCTGGGAGAAGCAAAAAGGTAAGTTGCAGGAAGAGATTGGAGAGGAGAAACAGAAGATTTCAGAATGGCAACAACAGTTAGCTCGTATCAAGCAGGATCAGAAAGAAGCTGAGGTGAAATGGAAGCAAGAGGTGAAGGCTAAGGAGGCAGCCTTGACACAAGTGGACGAGGAAAGAGTTGCCAAGGAAACAGCTGAGGCTGGTAATAAACGAAAGCTTGAGGCTTTGCGCCTCAAGATAGAAATAGATTTCCAACGTCACAAGGATGATCTCCAAAGACTTGAGCAAGAACTCTCACGTCTAAAATCATCTGCGCAGTCTACCGAATTGCCTCTTCCATCAAATGCTTTGCCAAGAGGAATCTCTGGTGGTGCAAAACCTCAAGGAGAAACAATTGCCAAGCTGCTTCGTGAATTAGATAACCTGGAGAATTCTGCAGAGAAAGAAGTCAGCTGCGATAGAGAATGCATGATATGCATGAAAGATGAAGTGTCTGTTGTTTTCCTGCCCTGTGCTCATCAAGTTCTCTGCGCTAATTGCAATGATGATTATGGCAAGAAAGGTAGAGCTACTTGCCCATGTTGCCGAGCTCCAATTGAACATAGAATTCGTGTTTTTGGTGCAAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

801

Amino Acids

88.95

Weight (kDa)

7.91

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	170 - 285	2.6e-26	PIR2-like, helical domain
zf-C3HC4_3	PF13920	744 - 792	1e-11	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35330 AT2G35330
fragaria_vesca	FvH4_5g21710 FvH4_5g21710
malus_domestica	MD06G1032100.v1.1
prunus_persica	Prupe.5G040000_v2.0.a1 Prupe.5G040000_v2.0.a1
pyrus_communis	pycom06g02660
rosa_chinensis	RchiOBHm_Chr7g0209211
rosa_laevigata	RLG00000003157
rosa_multiflora	Rmu_sc0001701.1_g000007 Rmu_sc0031054.1_g000002
rosa_roxburghii	Rroxscaffold_3G00249630
rosa_rugosa	Rorug07G0110200 Rorug07G0110300 Rorug07G0110400
rosa_samantha	Rh7AG244300 Rh7BG239500 Rh7CG259800 Rh7DG251100
rosa_wichuraiana	Rw7G020720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2088
Acc36I	ACCTGC	1 cut(s)	763
AccB7I	CCANNNNNTGG	1 cut(s)	1291
AccI	GTMKAC	1 cut(s)	2093
AccII	CGCG	2 cut(s)	377, 878
AciI	CCGC	7 cut(s)	21, 171, 193, 612, 878, 981, 1184
AclWI	GGATC	4 cut(s)	313, 318, 326, 1878
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	5 cut(s)	688, 1313, 1339, 2203, 2379
AcuI	CTGAAG	3 cut(s)	1260, 1281, 1781
AfaI	GTAC	1 cut(s)	850
AfiI	CCNNNNNNNGG	8 cut(s)	17, 430, 490, 878, 1025, 1291, 1450, 1575
AgsI	TTSAA	9 cut(s)	412, 505, 661, 1104, 1120, 1327, 1537, 1655, 2372
AhlI	ACTAGT	1 cut(s)	665
AjiI	CACGTC	2 cut(s)	301, 2072
AjnI	CCWGG	3 cut(s)	1284, 1775, 2196
AjuI	GAANNNNNNNTTGG	2 cut(s)	1754, 1786
Alw21I	GWGCWC	3 cut(s)	390, 2290, 2365
Alw26I	GTCTC	3 cut(s)	258, 449, 1517
AlwI	GGATC	4 cut(s)	313, 318, 326, 1878
Ama87I	CYCGRG	1 cut(s)	512
ApaI	GGGCCC	1 cut(s)	1444
ApoI	RAATTY	5 cut(s)	688, 1313, 1339, 2203, 2379
AspLEI	GCGC	7 cut(s)	878, 964, 1222, 1431, 2004, 2089, 2306
AsuC2I	CCSGG	5 cut(s)	18, 673, 751, 959, 1628
AsuHPI	GGTGA	6 cut(s)	141, 692, 809, 1387, 1900, 1918
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	3 cut(s)	45, 481, 1624
BaeGI	GKGCMC	2 cut(s)	603, 1444
BamHI	GGATCC	1 cut(s)	318
BanII	GRGCYC	2 cut(s)	1444, 2365
BarI	GAAGNNNNNNTAC	2 cut(s)	1374, 1406
BbsI	GAAGAC	1 cut(s)	1654
Bbv12I	GWGCWC	3 cut(s)	390, 2290, 2365
BbvCI	CCTCAGC	4 cut(s)	1196, 1505, 1884, 1968
BccI	CCATC	7 cut(s)	223, 677, 748, 1504, 1582, 1678, 2119
BceAI	ACGGC	1 cut(s)	625
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciT130I	CCWGG	3 cut(s)	1286, 1777, 2198
BcnI	CCSGG	5 cut(s)	18, 673, 751, 959, 1628
BcoDI	GTCTC	3 cut(s)	258, 449, 1517
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	6 cut(s)	219, 545, 666, 873, 906, 1611
BfmI	CTRYAG	2 cut(s)	900, 2208
BfoI	RGCGCY	1 cut(s)	965
BfuAI	ACCTGC	1 cut(s)	763
BlpI	GCTNAGC	1 cut(s)	1047
BmcAI	AGTACT	1 cut(s)	850
Bme1390I	CCNGG	8 cut(s)	18, 673, 751, 959, 1286, 1628, 1777, 2198
Bme18I	GGWCC	3 cut(s)	45, 481, 1624
BmeT110I	CYCGRG	1 cut(s)	512
BmgBI	CACGTC	2 cut(s)	301, 2072
BmiI	GGNNCC	6 cut(s)	46, 320, 705, 935, 957, 1442
BmrFI	CCNGG	8 cut(s)	18, 673, 751, 959, 1286, 1628, 1777, 2198
BmsI	GCATC	2 cut(s)	790, 1207
BoxI	GACNNNNGTC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	1654
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpmI	CTGGAG	1 cut(s)	2219
Bpu10I	CCTNAGC	5 cut(s)	1196, 1505, 1884, 1914, 1968
Bpu1102I	GCTNAGC	1 cut(s)	1047
BpuEI	CTTGAG	6 cut(s)	1430, 1577, 1991, 2012, 2075, 2139
BpuMI	CCSGG	5 cut(s)	18, 673, 751, 959, 1628
BsaBI	GATNNNNATC	1 cut(s)	1326
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	5 cut(s)	693, 782, 957, 1776, 1956
BsaWI	WCCGGW	1 cut(s)	862
BsaXI	ACNNNNNCTCC	6 cut(s)	485, 515, 832, 862, 1739, 1769
Bsc4I	CCNNNNNNNGG	8 cut(s)	17, 430, 490, 878, 1025, 1291, 1450, 1575
Bse118I	RCCGGY	3 cut(s)	5, 458, 706
Bse3DI	GCAATG	4 cut(s)	346, 934, 1003, 2320
Bse8I	GATNNNNATC	1 cut(s)	1326
BseBI	CCWGG	3 cut(s)	1286, 1777, 2198
BseDI	CCNNGG	5 cut(s)	693, 782, 957, 1776, 1956
BseGI	GGATG	5 cut(s)	625, 759, 1222, 1515, 2044
BseJI	GATNNNNATC	1 cut(s)	1326
BseLI	CCNNNNNNNGG	8 cut(s)	17, 430, 490, 878, 1025, 1291, 1450, 1575
BseMI	GCAATG	4 cut(s)	346, 934, 1003, 2320
BseMII	CTCAG	8 cut(s)	174, 468, 1038, 1210, 1496, 1691, 1875, 1959
BseRI	GAGGAG	7 cut(s)	101, 104, 109, 506, 749, 1535, 1832
BseSI	GKGCMC	2 cut(s)	603, 1444
BseYI	CCCAGC	1 cut(s)	462
BsgI	GTGCAG	1 cut(s)	457
Bsh1236I	CGCG	2 cut(s)	377, 878
Bsh1285I	CGRYCG	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	203
BsiHKAI	GWGCWC	3 cut(s)	390, 2290, 2365
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	9 cut(s)	6, 18, 459, 672, 707, 750, 863, 959, 1627
BslFI	GGGAC	1 cut(s)	1062
BslI	CCNNNNNNNGG	8 cut(s)	17, 430, 490, 878, 1025, 1291, 1450, 1575
BsmAI	GTCTC	3 cut(s)	258, 449, 1517
BsmFI	GGGAC	1 cut(s)	1062
BsmI	GAATGC	2 cut(s)	1669, 2243
Bso31I	GGTCTC	1 cut(s)	449
BsoBI	CYCGRG	1 cut(s)	512
Bsp120I	GGGCCC	1 cut(s)	1440
Bsp1286I	GDGCHC	5 cut(s)	390, 603, 1444, 2290, 2365
Bsp143I	GATC	8 cut(s)	200, 318, 323, 826, 1360, 1483, 1870, 2041
Bsp1720I	GCTNAGC	1 cut(s)	1047
Bsp68I	TCGCGA	1 cut(s)	377
BspACI	CCGC	7 cut(s)	21, 171, 193, 612, 878, 981, 1184
BspCNI	CTCAG	8 cut(s)	173, 469, 1039, 1209, 1497, 1692, 1876, 1960
BspFNI	CGCG	2 cut(s)	377, 878
BspHI	TCATGA	1 cut(s)	1480
BspLI	GGNNCC	6 cut(s)	46, 320, 705, 935, 957, 1442
BspMAI	CTGCAG	2 cut(s)	904, 2212
BspMI	ACCTGC	1 cut(s)	763
BspPI	GGATC	4 cut(s)	313, 318, 326, 1878
BspTNI	GGTCTC	1 cut(s)	449
BsrDI	GCAATG	4 cut(s)	346, 934, 1003, 2320
BsrFI	RCCGGY	3 cut(s)	5, 458, 706
BssAI	RCCGGY	3 cut(s)	5, 458, 706
BssECI	CCNNGG	5 cut(s)	693, 782, 957, 1776, 1956
BssMI	GATC	8 cut(s)	200, 318, 323, 826, 1360, 1483, 1870, 2041
BssT1I	CCWWGG	1 cut(s)	1956
Bst2UI	CCWGG	3 cut(s)	1286, 1777, 2198
Bst4CI	ACNGT	3 cut(s)	286, 1170, 1851
Bst6I	CTCTTC	7 cut(s)	142, 1115, 1257, 1568, 1757, 1800, 2112
BstAPI	GCANNNNNTGC	1 cut(s)	2247
BstC8I	GCNNGC	4 cut(s)	99, 747, 1188, 1461
BstF5I	GGATG	5 cut(s)	625, 759, 1222, 1515, 2044
BstFNI	CGCG	2 cut(s)	377, 878
BstH2I	RGCGCY	1 cut(s)	965
BstHHI	GCGC	7 cut(s)	878, 964, 1222, 1431, 2004, 2089, 2306
BstKTI	GATC	8 cut(s)	203, 321, 326, 829, 1363, 1486, 1873, 2044
BstMAI	GTCTC	3 cut(s)	258, 449, 1517
BstMBI	GATC	8 cut(s)	200, 318, 323, 826, 1360, 1483, 1870, 2041
BstMCI	CGRYCG	1 cut(s)	203
BstNI	CCWGG	3 cut(s)	1286, 1777, 2198
BstNSI	RCATGY	1 cut(s)	101
BstPAI	GACNNNNGTC	1 cut(s)	202
BstSCI	CCNGG	8 cut(s)	16, 671, 749, 957, 1284, 1626, 1775, 2196
BstSFI	CTRYAG	2 cut(s)	900, 2208
BstSLI	GKGCMC	2 cut(s)	603, 1444
BstUI	CGCG	2 cut(s)	377, 878
BstV2I	GAAGAC	1 cut(s)	1654
BstX2I	RGATCY	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	944
BstYI	RGATCY	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	1148
BtrI	CACGTC	2 cut(s)	301, 2072
BtsCI	GGATG	5 cut(s)	625, 759, 1222, 1515, 2044
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	3 cut(s)	282, 474, 601
BtuMI	TCGCGA	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	4 cut(s)	99, 747, 1188, 1461
CciI	TCATGA	1 cut(s)	1480
CfoI	GCGC	7 cut(s)	878, 964, 1222, 1431, 2004, 2089, 2306
Cfr10I	RCCGGY	3 cut(s)	5, 458, 706
CseI	GACGC	1 cut(s)	1695
Csp6I	GTAC	1 cut(s)	849
CviQI	GTAC	1 cut(s)	849
DpnI	GATC	8 cut(s)	202, 320, 325, 828, 1362, 1485, 1872, 2043
DpnII	GATC	8 cut(s)	200, 318, 323, 826, 1360, 1483, 1870, 2041
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	7 cut(s)	142, 1115, 1257, 1568, 1757, 1800, 2112
EarI	CTCTTC	7 cut(s)	142, 1115, 1257, 1568, 1757, 1800, 2112
Ecl136II	GAGCTC	1 cut(s)	2363
Eco130I	CCWWGG	1 cut(s)	1956
Eco24I	GRGCYC	2 cut(s)	1444, 2365
Eco31I	GGTCTC	1 cut(s)	449
Eco47I	GGWCC	3 cut(s)	45, 481, 1624
Eco53kI	GAGCTC	1 cut(s)	2363
Eco57I	CTGAAG	3 cut(s)	1260, 1281, 1781
Eco88I	CYCGRG	1 cut(s)	512
EcoICRI	GAGCTC	1 cut(s)	2363
EcoO109I	RGGNCCY	1 cut(s)	45
EcoRI	GAATTC	3 cut(s)	688, 2203, 2379
EcoRII	CCWGG	3 cut(s)	1284, 1775, 2196
EcoT14I	CCWWGG	1 cut(s)	1956
EcoT22I	ATGCAT	2 cut(s)	2243, 2252
EcoT38I	GRGCYC	2 cut(s)	1444, 2365
ErhI	CCWWGG	1 cut(s)	1956
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	1062
FauI	CCCGC	2 cut(s)	871, 974
FblI	GTMKAC	1 cut(s)	2093
FokI	GGATG	5 cut(s)	632, 766, 1229, 1522, 2051
FriOI	GRGCYC	2 cut(s)	1444, 2365
FspBI	CTAG	6 cut(s)	219, 545, 666, 873, 906, 1611
FspI	TGCGCA	1 cut(s)	2088
GlaI	GCGC	7 cut(s)	877, 963, 1221, 1430, 2003, 2088, 2305
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	2219
HaeII	RGCGCY	1 cut(s)	965
HapII	CCGG	9 cut(s)	6, 18, 459, 672, 707, 750, 863, 959, 1627
HgaI	GACGC	1 cut(s)	1695
HhaI	GCGC	7 cut(s)	878, 964, 1222, 1431, 2004, 2089, 2306
Hin6I	GCGC	7 cut(s)	876, 962, 1220, 1429, 2002, 2087, 2304
HinP1I	GCGC	7 cut(s)	876, 962, 1220, 1429, 2002, 2087, 2304
HincII	GTYRAC	1 cut(s)	1720
HindII	GTYRAC	1 cut(s)	1720
HindIII	AAGCTT	2 cut(s)	1472, 1988
HpaII	CCGG	9 cut(s)	6, 18, 459, 672, 707, 750, 863, 959, 1627
HphI	GGTGA	6 cut(s)	141, 692, 809, 1387, 1900, 1918
Hpy166II	GTNNAC	4 cut(s)	1624, 1720, 1939, 2094
Hpy8I	GTNNAC	4 cut(s)	1624, 1720, 1939, 2094
Hpy99I	CGWCG	6 cut(s)	201, 208, 362, 455, 566, 569
HpyAV	CCTTC	5 cut(s)	418, 1110, 1417, 1444, 1903
HpyCH4III	ACNGT	3 cut(s)	286, 1170, 1851
HpyCH4IV	ACGT	4 cut(s)	300, 357, 2029, 2071
HpySE526I	ACGT	4 cut(s)	300, 357, 2029, 2071
HspAI	GCGC	7 cut(s)	876, 962, 1220, 1429, 2002, 2087, 2304
Kzo9I	GATC	8 cut(s)	200, 318, 323, 826, 1360, 1483, 1870, 2041
LmnI	GCTCC	5 cut(s)	493, 703, 933, 1426, 2368
LweI	GCATC	2 cut(s)	790, 1207
MaeI	CTAG	6 cut(s)	219, 545, 666, 873, 906, 1611
MaeII	ACGT	4 cut(s)	300, 357, 2029, 2071
MaeIII	GTNAC	5 cut(s)	557, 1170, 1266, 1381, 2030
MalI	GATC	8 cut(s)	202, 320, 325, 828, 1362, 1485, 1872, 2043
MboI	GATC	8 cut(s)	200, 318, 323, 826, 1360, 1483, 1870, 2041
MfeI	CAATTG	3 cut(s)	485, 2166, 2367
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	5 cut(s)	390, 603, 1444, 2290, 2365
MlyI	GAGTC	4 cut(s)	158, 1274, 1519, 1721
MmeI	TCCRAC	3 cut(s)	474, 711, 2050
Mph1103I	ATGCAT	2 cut(s)	2243, 2252
MseI	TTAA	4 cut(s)	1089, 1296, 1401, 1497
MslI	CAYNNNNRTG	3 cut(s)	272, 1568, 2037
MspA1I	CMGCKG	4 cut(s)	1145, 1640, 1967, 2226
MspI	CCGG	9 cut(s)	6, 18, 459, 672, 707, 750, 863, 959, 1627
MspR9I	CCNGG	8 cut(s)	18, 673, 751, 959, 1286, 1628, 1777, 2198
MunI	CAATTG	3 cut(s)	485, 2166, 2367
Mva1269I	GAATGC	2 cut(s)	1669, 2243
MvaI	CCWGG	3 cut(s)	1286, 1777, 2198
MvnI	CGCG	2 cut(s)	377, 878
NciI	CCSGG	5 cut(s)	18, 673, 751, 959, 1628
NdeII	GATC	8 cut(s)	200, 318, 323, 826, 1360, 1483, 1870, 2041
NlaIV	GGNNCC	6 cut(s)	46, 320, 705, 935, 957, 1442
NmeAIII	GCCGAG	2 cut(s)	807, 2384
NmuCI	GTSAC	2 cut(s)	1266, 2030
NruI	TCGCGA	1 cut(s)	377
NsbI	TGCGCA	1 cut(s)	2088
NsiI	ATGCAT	2 cut(s)	2243, 2252
NspI	RCATGY	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	512
PagI	TCATGA	1 cut(s)	1480
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PctI	GAATGC	2 cut(s)	1669, 2243
PfeI	GAWTC	8 cut(s)	211, 310, 392, 508, 698, 859, 1327, 2133
PflMI	CCANNNNNTGG	1 cut(s)	1291
PfoI	TCCNGGA	1 cut(s)	671
Ple19I	CGATCG	1 cut(s)	203
PleI	GAGTC	4 cut(s)	158, 1273, 1519, 1720
PpsI	GAGTC	4 cut(s)	158, 1273, 1519, 1720
PpuMI	RGGWCCY	1 cut(s)	45
PshAI	GACNNNNGTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	2365
Psp5II	RGGWCCY	1 cut(s)	45
Psp6I	CCWGG	3 cut(s)	1284, 1775, 2196
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	3 cut(s)	1284, 1775, 2196
PspN4I	GGNNCC	6 cut(s)	46, 320, 705, 935, 957, 1442
PspOMI	GGGCCC	1 cut(s)	1440
PspPPI	RGGWCCY	1 cut(s)	45
PstI	CTGCAG	2 cut(s)	904, 2212
PsuI	RGATCY	1 cut(s)	318
PvuI	CGATCG	1 cut(s)	203
PvuII	CAGCTG	4 cut(s)	1145, 1640, 1967, 2226
RruI	TCGCGA	1 cut(s)	377
RsaI	GTAC	1 cut(s)	850
RsaNI	GTAC	1 cut(s)	849
RseI	CAYNNNNRTG	3 cut(s)	272, 1568, 2037
SacI	GAGCTC	1 cut(s)	2365
SaqAI	TTAA	4 cut(s)	1089, 1296, 1401, 1497
Sau3AI	GATC	8 cut(s)	200, 318, 323, 826, 1360, 1483, 1870, 2041
ScaI	AGTACT	1 cut(s)	850
SchI	GAGTC	4 cut(s)	158, 1274, 1519, 1721
ScrFI	CCNGG	8 cut(s)	18, 673, 751, 959, 1286, 1628, 1777, 2198
SduI	GDGCHC	5 cut(s)	390, 603, 1444, 2290, 2365
SfaNI	GCATC	2 cut(s)	790, 1207
SfcI	CTRYAG	2 cut(s)	900, 2208
Sfr274I	CTCGAG	1 cut(s)	512
SinI	GGWCC	3 cut(s)	45, 481, 1624
SlaI	CTCGAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	3 cut(s)	272, 1568, 2037
SmlI	CTYRAG	7 cut(s)	512, 1409, 1556, 1991, 2006, 2054, 2154
SmoI	CTYRAG	7 cut(s)	512, 1409, 1556, 1991, 2006, 2054, 2154
SpeI	ACTAGT	1 cut(s)	665
SphI	GCATGC	1 cut(s)	101
SsiI	CCGC	7 cut(s)	21, 171, 193, 612, 878, 981, 1184
SspMI	CTAG	6 cut(s)	219, 545, 666, 873, 906, 1611
SstI	GAGCTC	1 cut(s)	2365
StyD4I	CCNGG	8 cut(s)	16, 671, 749, 957, 1284, 1626, 1775, 2196
StyI	CCWWGG	1 cut(s)	1956
TaaI	ACNGT	3 cut(s)	286, 1170, 1851
TaiI	ACGT	4 cut(s)	303, 360, 2032, 2074
TaqI	TCGA	5 cut(s)	342, 360, 390, 513, 1153
TatI	WGTACW	1 cut(s)	848
TauI	GCSGC	2 cut(s)	24, 615
TfiI	GAWTC	8 cut(s)	211, 310, 392, 508, 698, 859, 1327, 2133
Tru1I	TTAA	4 cut(s)	1089, 1296, 1401, 1497
Tru9I	TTAA	4 cut(s)	1089, 1296, 1401, 1497
TscAI	CASTG	3 cut(s)	289, 481, 608
TseFI	GTSAC	2 cut(s)	1266, 2030
Tsp45I	GTSAC	2 cut(s)	1266, 2030
TspDTI	ATGAA	9 cut(s)	129, 821, 965, 1013, 1121, 1382, 1586, 2267, 2274
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	3 cut(s)	289, 481, 608
Van91I	CCANNNNNTGG	1 cut(s)	1291
VpaK11BI	GGWCC	3 cut(s)	45, 481, 1624
XapI	RAATTY	5 cut(s)	688, 1313, 1339, 2203, 2379
XceI	RCATGY	1 cut(s)	101
XhoI	CTCGAG	1 cut(s)	512
XmiI	GTMKAC	1 cut(s)	2093
XspI	CTAG	6 cut(s)	219, 545, 666, 873, 906, 1611
ZrmI	AGTACT	1 cut(s)	850
Zsp2I	ATGCAT	2 cut(s)	2243, 2252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.