Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009779

Physical Location & Seq

Genomic Coordinates Reverse (-)

3908901 .. 3910480

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCTAGCCGGGGAAGCTGTGAGTAACATCCGTACTGTTGCTGCATTTTGTTCTGAGGAGAAGATCATCGACCTTTATGCTCGTGAACTTGTGGATCCTTCTAGACGTTCATTTACTCGCGGTCAGATTGCTGGCATATGCTACGGTGTATCCCAGTTCTTCATATTCTCATCCTACGGCCTGGCCTTGTGGTATGGTTCTGTTTTAATGGGAAAGGAGCTCGCAAGCTTTAAATCAGTCATGAAATCTTTCATGGTTTTGATTGTGACGGCATTAGCTATGGGTGAGACTTTAGCACTTGCCCCAGACCTCTTGAAAGGGAACCAAATGGTGTCATCAGTCTTTGAAGTATTGGATCGTAGAACTGAAGTCCTGGGAGACGTAGGAGAGGAGCTTATGAAAGTTGAAGGTACAATAGAGCTAAGGAGTGTTCACTTTGGCTACCCTTCAAGACCAGACGTATCCATTTTCAAGGACTTCAATTTGGAAGTGCGCTCGGGCAAAAGTATGGCACTAGTGGGGCAAAGTGGATCTGGAAAAAGCTCTGTGCTTTCTCTAATACTCCGATTTTACGATCCAACCTCTGGGAAAGTCATGATTGATGGGAAAGACATCAAGAAACTCAATATCAAGTCTCTTCGTAAACATATTGGCTTGGTTCAACAAGAACCAGCTCTCTTTGCCACATCGATTTATGAAAACATCCTCTATGGAAAAGATGGAGCTTCTGAAGCAGAAGTTACTGAAGCGGCTAAGCTTGCTAATGCGCACAGTTTCATCAGTGCCCTTCCTGAGGGATACTTAACCAAAGTCGGAGAGCGAGGGGTGCAACTATCTGGTGGTCAAAGGCAAAGGGTGGCCATTGCCCGTGCTGTTCTAAAGAACCCAGAAATCTTGTTATTAGATGAAGCTACCAGTGCTCTAGATGTCGAGTCGGAGCGCGTGGTGCAACAAGCTCTTGACAGATTGATGAAGAACCGTACAACGGTATTGGTGGCACATAGGCTTTCGACAATAAAAAACGCAGATGAAATCTCAGTTATACAAGACGGGAAGATTGTTGAGCAAGGAAGTCATTCGACACTTAGAGAGAACAGAAATGGACCATATTTCAAGTTAATAAACATTCAGCAACAGCAGCAACGACAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

385

Amino Acids

42.27

Weight (kDa)

8.65

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10680 AT1G10680 AT4G25960
fragaria_vesca	FvH4_5g22520 FvH4_5g22520 FvH4_5g22520 FvH4_5g22520 FvH4_5g22520 FvH4_5g22520
malus_domestica	MD06G1037400.v1.1
prunus_persica	Prupe.5G031600_v2.0.a1
pyrus_communis	pycom06g03090
rosa_chinensis	RchiOBHm_Chr7g0210291
rosa_laevigata	RLG00000003051 RLG00000029346
rosa_multiflora	Rmu_sc0003639.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248450
rosa_rugosa	Rorug07G0120500
rosa_samantha	Rh7AG253400 Rh7CG270300
rosa_wichuraiana	Rw7G021600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	768
AccB7I	CCANNNNNTGG	1 cut(s)	584
AccII	CGCG	2 cut(s)	120, 942
AciI	CCGC	2 cut(s)	120, 749
AclWI	GGATC	5 cut(s)	89, 102, 363, 538, 569
AcoI	YGGCCR	1 cut(s)	858
AcuI	CTGAAG	3 cut(s)	387, 750, 765
AfaI	GTAC	3 cut(s)	34, 412, 982
AfiI	CCNNNNNNNGG	3 cut(s)	584, 793, 985
AgsI	TTSAA	8 cut(s)	316, 347, 407, 450, 472, 481, 662, 1114
AhlI	ACTAGT	1 cut(s)	514
AjnI	CCWGG	2 cut(s)	180, 372
Alw21I	GWGCWC	2 cut(s)	222, 922
Alw26I	GTCTC	3 cut(s)	281, 372, 639
AlwI	GGATC	5 cut(s)	89, 102, 363, 538, 569
Ama87I	CYCGRG	1 cut(s)	496
AoxI	GGCC	3 cut(s)	178, 183, 858
ApeKI	GCWGC	2 cut(s)	41, 1138
Asp700I	GAANNNNTTC	2 cut(s)	248, 1075
AspLEI	GCGC	3 cut(s)	495, 769, 942
AspS9I	GGNCC	1 cut(s)	1103
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	296
AsuNHI	GCTAGC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	1103
AxyI	CCTNAGG	1 cut(s)	792
BaeGI	GKGCMC	1 cut(s)	787
BalI	TGGCCA	1 cut(s)	860
BamHI	GGATCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	222, 922
BbvI	GCAGC	2 cut(s)	28, 1150
BccI	CCATC	2 cut(s)	596, 713
BceAI	ACGGC	2 cut(s)	193, 285
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	2 cut(s)	182, 374
BciVI	GTATCC	3 cut(s)	160, 472, 791
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	281, 372, 639
BcuI	ACTAGT	1 cut(s)	514
BfaI	CTAG	4 cut(s)	5, 102, 515, 923
BfuI	GTATCC	3 cut(s)	160, 472, 791
BisI	GCNGC	3 cut(s)	42, 750, 1139
BlpI	GCTNAGC	1 cut(s)	753
BlsI	GCNGC	3 cut(s)	43, 751, 1140
Bme1390I	CCNGG	3 cut(s)	10, 182, 374
Bme18I	GGWCC	1 cut(s)	1103
BmeT110I	CYCGRG	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	1103
BmiI	GGNNCC	2 cut(s)	96, 323
BmrFI	CCNGG	3 cut(s)	10, 182, 374
BmrI	ACTGGG	1 cut(s)	148
BmtI	GCTAGC	1 cut(s)	8
BmuI	ACTGGG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	422
Bpu1102I	GCTNAGC	1 cut(s)	753
BpuMI	CCSGG	1 cut(s)	10
Bsa29I	ATCGAT	1 cut(s)	689
BsaJI	CCNNGG	2 cut(s)	9, 373
Bsc4I	CCNNNNNNNGG	3 cut(s)	584, 793, 985
Bse1I	ACTGG	2 cut(s)	154, 915
Bse21I	CCTNAGG	1 cut(s)	792
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	2 cut(s)	182, 374
BseCI	ATCGAT	1 cut(s)	689
BseDI	CCNNGG	2 cut(s)	9, 373
BseGI	GGATG	3 cut(s)	27, 170, 702
BseLI	CCNNNNNNNGG	3 cut(s)	584, 793, 985
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	3 cut(s)	45, 783, 1050
BseNI	ACTGG	2 cut(s)	154, 915
BseRI	GAGGAG	2 cut(s)	71, 404
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	2 cut(s)	28, 1150
Bsh1236I	CGCG	2 cut(s)	120, 942
BshFI	GGCC	3 cut(s)	180, 185, 860
BshVI	ATCGAT	1 cut(s)	689
BsiHKAI	GWGCWC	2 cut(s)	222, 922
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	3 cut(s)	584, 793, 985
BsmAI	GTCTC	3 cut(s)	281, 372, 639
BsmBI	CGTCTC	1 cut(s)	372
BsnI	GGCC	3 cut(s)	180, 185, 860
BsoBI	CYCGRG	1 cut(s)	496
Bsp1286I	GDGCHC	3 cut(s)	222, 787, 922
Bsp143I	GATC	5 cut(s)	63, 94, 355, 530, 574
Bsp1720I	GCTNAGC	1 cut(s)	753
BspACI	CCGC	2 cut(s)	120, 749
BspANI	GGCC	3 cut(s)	180, 185, 860
BspCNI	CTCAG	3 cut(s)	46, 784, 1049
BspDI	ATCGAT	1 cut(s)	689
BspFNI	CGCG	2 cut(s)	120, 942
BspHI	TCATGA	2 cut(s)	240, 594
BspLI	GGNNCC	2 cut(s)	96, 323
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	5 cut(s)	89, 102, 363, 538, 569
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	2 cut(s)	154, 915
BssECI	CCNNGG	2 cut(s)	9, 373
BssMI	GATC	5 cut(s)	63, 94, 355, 530, 574
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	182, 374
Bst4CI	ACNGT	6 cut(s)	37, 146, 773, 980, 988, 1152
Bst6I	CTCTTC	1 cut(s)	642
BstC8I	GCNNGC	5 cut(s)	6, 133, 222, 226, 759
BstDEI	CTNAG	6 cut(s)	54, 422, 753, 792, 1036, 1085
BstENI	CCTNNNNNAGG	1 cut(s)	791
BstF5I	GGATG	3 cut(s)	27, 170, 702
BstFNI	CGCG	2 cut(s)	120, 942
BstHHI	GCGC	3 cut(s)	495, 769, 942
BstKTI	GATC	5 cut(s)	66, 97, 358, 533, 577
BstMAI	GTCTC	3 cut(s)	281, 372, 639
BstMBI	GATC	5 cut(s)	63, 94, 355, 530, 574
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 680, 731, 758, 826, 917, 946, 1138
BstNI	CCWGG	2 cut(s)	182, 374
BstSCI	CCNGG	3 cut(s)	8, 180, 372
BstSLI	GKGCMC	1 cut(s)	787
BstUI	CGCG	2 cut(s)	120, 942
BstV1I	GCAGC	2 cut(s)	28, 1150
BstX2I	RGATCY	2 cut(s)	94, 530
BstYI	RGATCY	2 cut(s)	94, 530
Bsu15I	ATCGAT	1 cut(s)	689
Bsu36I	CCTNAGG	1 cut(s)	792
BsuI	GTATCC	3 cut(s)	160, 472, 791
BsuRI	GGCC	3 cut(s)	180, 185, 860
BsuTUI	ATCGAT	1 cut(s)	689
BtsCI	GGATG	3 cut(s)	27, 170, 702
BtsIMutI	CAGTG	2 cut(s)	787, 922
Cac8I	GCNNGC	5 cut(s)	6, 133, 222, 226, 759
CciI	TCATGA	2 cut(s)	240, 594
CfoI	GCGC	3 cut(s)	495, 769, 942
Cfr13I	GGNCC	1 cut(s)	1103
ClaI	ATCGAT	1 cut(s)	689
Csp6I	GTAC	3 cut(s)	33, 411, 981
CviAII	CATG	3 cut(s)	241, 253, 595
CviQI	GTAC	3 cut(s)	33, 411, 981
DdeI	CTNAG	6 cut(s)	54, 422, 753, 792, 1036, 1085
DpnI	GATC	5 cut(s)	65, 96, 357, 532, 576
DpnII	GATC	5 cut(s)	63, 94, 355, 530, 574
DraI	TTTAAA	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	858
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	1103
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	3 cut(s)	387, 750, 765
Eco81I	CCTNAGG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	496
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	791
EcoRII	CCWGG	2 cut(s)	180, 372
EcoT38I	GRGCYC	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	372
FaeI	CATG	3 cut(s)	244, 256, 598
FatI	CATG	3 cut(s)	240, 252, 594
FauNDI	CATATG	1 cut(s)	137
Fnu4HI	GCNGC	3 cut(s)	42, 750, 1139
FokI	GGATG	3 cut(s)	14, 157, 689
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	42, 750, 1139
FspAI	RTGCGCAY	1 cut(s)	768
FspBI	CTAG	4 cut(s)	5, 102, 515, 923
FspI	TGCGCA	1 cut(s)	768
GlaI	GCGC	3 cut(s)	494, 768, 941
GluI	GCNGC	3 cut(s)	42, 750, 1139
HaeIII	GGCC	3 cut(s)	180, 185, 860
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	3 cut(s)	495, 769, 942
Hin1II	CATG	3 cut(s)	244, 256, 598
Hin6I	GCGC	3 cut(s)	493, 767, 940
HinP1I	GCGC	3 cut(s)	493, 767, 940
HindIII	AAGCTT	2 cut(s)	226, 755
HinfI	GANTC	1 cut(s)	932
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	86, 433, 644
Hpy188I	TCNGA	6 cut(s)	55, 126, 566, 730, 815, 937
Hpy8I	GTNNAC	3 cut(s)	86, 433, 644
HpyAV	CCTTC	4 cut(s)	108, 401, 456, 797
HpyCH4III	ACNGT	6 cut(s)	37, 146, 773, 980, 988, 1152
HpyCH4IV	ACGT	3 cut(s)	106, 381, 459
HpyCH4V	TGCA	3 cut(s)	44, 829, 949
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 680, 731, 758, 826, 917, 946, 1138
HpyF3I	CTNAG	6 cut(s)	54, 422, 753, 792, 1036, 1085
HpySE526I	ACGT	3 cut(s)	106, 381, 459
Hsp92II	CATG	3 cut(s)	244, 256, 598
HspAI	GCGC	3 cut(s)	493, 767, 940
Kzo9I	GATC	5 cut(s)	63, 94, 355, 530, 574
LmnI	GCTCC	4 cut(s)	217, 391, 722, 937
Lsp1109I	GCAGC	2 cut(s)	28, 1150
MaeI	CTAG	4 cut(s)	5, 102, 515, 923
MaeII	ACGT	3 cut(s)	106, 381, 459
MaeIII	GTNAC	3 cut(s)	23, 265, 739
MalI	GATC	5 cut(s)	65, 96, 357, 532, 576
MboI	GATC	5 cut(s)	63, 94, 355, 530, 574
MboII	GAAGA	5 cut(s)	73, 151, 629, 985, 1066
MflI	RGATCY	2 cut(s)	94, 530
MhlI	GDGCHC	3 cut(s)	222, 787, 922
MlsI	TGGCCA	1 cut(s)	860
MluCI	AATT	1 cut(s)	481
MluNI	TGGCCA	1 cut(s)	860
MlyI	GAGTC	1 cut(s)	941
MmeI	TCCRAC	3 cut(s)	602, 793, 915
MnlI	CCTC	7 cut(s)	49, 320, 382, 592, 716, 787, 815
Mox20I	TGGCCA	1 cut(s)	860
MroXI	GAANNNNTTC	2 cut(s)	248, 1075
MscI	TGGCCA	1 cut(s)	860
MseI	TTAA	4 cut(s)	206, 231, 803, 1118
Msp20I	TGGCCA	1 cut(s)	860
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	3 cut(s)	10, 182, 374
MvaI	CCWGG	2 cut(s)	182, 374
MvnI	CGCG	2 cut(s)	120, 942
MwoI	GCNNNNNNNGC	8 cut(s)	14, 680, 731, 758, 826, 917, 946, 1138
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	1 cut(s)	137
NdeII	GATC	5 cut(s)	63, 94, 355, 530, 574
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	244, 256, 598
NlaIV	GGNNCC	2 cut(s)	96, 323
NmuCI	GTSAC	1 cut(s)	265
NsbI	TGCGCA	1 cut(s)	768
PagI	TCATGA	2 cut(s)	240, 594
PdmI	GAANNNNTTC	2 cut(s)	248, 1075
PflMI	CCANNNNNTGG	1 cut(s)	584
PkrI	GCNGC	3 cut(s)	43, 751, 1140
PleI	GAGTC	1 cut(s)	940
PpsI	GAGTC	1 cut(s)	940
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	180, 372
PspGI	CCWGG	2 cut(s)	180, 372
PspN4I	GGNNCC	2 cut(s)	96, 323
PspPI	GGNCC	1 cut(s)	1103
PsuI	RGATCY	2 cut(s)	94, 530
RsaI	GTAC	3 cut(s)	34, 412, 982
RsaNI	GTAC	3 cut(s)	33, 411, 981
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	4 cut(s)	206, 231, 803, 1118
SatI	GCNGC	3 cut(s)	42, 750, 1139
Sau3AI	GATC	5 cut(s)	63, 94, 355, 530, 574
Sau96I	GGNCC	1 cut(s)	1103
SchI	GAGTC	1 cut(s)	941
ScrFI	CCNGG	3 cut(s)	10, 182, 374
SduI	GDGCHC	3 cut(s)	222, 787, 922
SinI	GGWCC	1 cut(s)	1103
SpeI	ACTAGT	1 cut(s)	514
Sse9I	AATT	1 cut(s)	481
SsiI	CCGC	2 cut(s)	120, 749
SspMI	CTAG	4 cut(s)	5, 102, 515, 923
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	8, 180, 372
TaaI	ACNGT	6 cut(s)	37, 146, 773, 980, 988, 1152
TaiI	ACGT	3 cut(s)	109, 384, 462
TaqI	TCGA	5 cut(s)	69, 689, 930, 1010, 1079
TasI	AATT	1 cut(s)	481
TauI	GCSGC	1 cut(s)	752
Tru1I	TTAA	4 cut(s)	206, 231, 803, 1118
Tru9I	TTAA	4 cut(s)	206, 231, 803, 1118
TscAI	CASTG	2 cut(s)	787, 922
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	41, 1138
Tsp45I	GTSAC	1 cut(s)	265
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	787, 922
Van91I	CCANNNNNTGG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	1103
XagI	CCTNNNNNAGG	1 cut(s)	791
XbaI	TCTAGA	2 cut(s)	101, 922
XmnI	GAANNNNTTC	2 cut(s)	248, 1075
XspI	CTAG	4 cut(s)	5, 102, 515, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.