RchiOBHm_Chr7g0210291

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009779
Physical Location & Seq
Reverse (-)
27907483 .. 27915337
7855 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18817

Sequence Viewer

Length: 3792 bp
ATGACTTCAAAGCCGGATACATTTCCCTCTTCCGGCAACGTAAACGGCGATCATGCAGACGACGACGACATGTTGAAGTTGAAGAAGAAGAAGGAGAAACAAGAAGAAGAGAAAGAGAACAAGAAGCGGAACGTTCCATTACTGAAGCTCTTCTCTTTCGCTGATTCCTACGACTGCCTTTTGATGGCAATCGGATCTATCGGGGCCTGTGTTCATGGCGCTTCAGTCCCTGTCTTCTTTATTTTCTTCGGAAAAATGATAAACATTATTGGCCTTGCTTATCTCTTTCCCAAAGAAGCTTCCTCTAAAGTAGCCAAGTACTCCTTGGATTTTTTATATCTCAGTGTAGCTATATTGTTTTCATCATGGACCGAGGTGGCTTGTTGGATGCACACTGGGGAAAGACAAGCAGCGAAAATGAGGATGGCATATTTGAGAGCCATGCTGAATCAAGATATAAGTCTTTTCGACACTGAAGCTTCTACTGGGCAAGTCATTTCTGCAATTACAAGTGACATTATTGTTGTTCAAGATGCTCTTTCTGAGAAGGTGGGGAACTTCATGCACTACATAAGCAGATTTCTTGCAGGATTCACAATTGGGTTTGTTAGGGTTTGGCAAATTAGTCTGGTCACTCTCTCCATTGTACCCCTGATTGCCCTTGCTGGCGGTATCTATGCCTTTGTCACTATTGGCCTCATTGCTAGAGTCAGAAAGTCCTATATCAAGGCTGGTGAAATTGCTGAAGAGGTGATAGGAAATGTAAGGACAGTGCAAGCATTTGCAGCAGAAGAAAGGGCTGTAAGGCAATACAAGACAGCTCTGTTGGGTACATACAAGTATGGGAAGAAAGCAGGACTGGCCAAGGGTTTGGGGCTGGGCTCCCTGCACTGCACCCTTTTTCTTTCATGGGCATTACTCGTTTGGTTCACCAGCGTTGTTGTGCACAAGAATATCGCTAATGGCGGCGAGTCTTTCACCACTATGCTTAATGTTGTTATTGCTGGCCTGTCACTAGGGCAAGCAGCGCCTGACATCTCTGCATTCATACGAGCCAAGGCAGCTGCGTATCCCATATTTGAGATGATAGAGAGGAACACAGTGAACCAATCCAGTAGCAAAACTGGCCGGAAACTGGACAAACTTGAGGGGCATATCCAATTCAAGGATGTATCTTTTAGCTACCCATCTCGTATAGATGTTAGTATCTTCAATAAGCTCAATCTTGATATCCCTGCTGGGAAGATTGTAGCCCTTGTGGGAGGAAGTGGTTCTGGCAAGAGTACAGTTATATCTTTGATTGAACGATTCTATGAGCCACTTGCTGGCCGGGTGTTGTTAGACGGAAATAATATAAGCGAACTTGACCTCAAATGGATGAGGCAACAAATTGGGCTGGTCAATCAGGAGCCTGCTCTTTTTGCAACAAGCATTAGGGAAAATATTCTCTATGGAAAAGGTGATGCTTCAATGGATGATATCAAACGTGCAGCTAAACTTTCAGAGGCTCTTTCTTTCATAAATAACCTCCCAGAGAGATTTGAAACTCAGGTTGGTGAGAGAGGCATACAACTCTCAGGAGGACAAAAGCAAAGGATTGCAATAGCACGTGCAATAGTGAAGAATCCATCAATTCTTCTATTGGATGAAGCAACGAGTGCTCTGGATGCAGAGTCTGAGAAGAGTGTGCAGGAGGCACTTGATCGTGCCATGGTAGGGCGAACGACAGTAGTGGTGGCACATCGTCTGTCCACTGTCAGGAATGCAGATCTTATTGCTGTTGTTCAAGAGGGGAAGATAGTTGAAACTGGGAGCCATGAGGAGCTAATTTCAAACCCCAACAGTGTCTATGCAGCACTTATTCATCTACAAGAGACAGCTTCTTTGCAACGCCACCCCTCATTTGGTCCTAACTTAGGACAGCCACTAAGCATAAGGTATTCACGGGAGTTATCTCGTACTACAGCAAGTTTTGGTGCCAGCTTTCGCTCTGATAAAGAATCTCTTGGCCGTCCTGGTGGTGATGGAACAGAGATTAAGTCAAGATATGTTTCGGCTAGTAGACTGTATTCCATGATCCGTCCAGACTGGCACTATGGGGTGATTGGTACCATTGCTGCCCTTATTGCTGGAGCCCAGATGCCTCTTTTTGCTCTCGGGGTCTCTCAGGCTCTAGTTTCCTATTACATGGACTGGGAAACAACATGCCGTGAGGTTAAAAAGATCTCTTTACTCTTCTGTGGGGCTGCAGTGCTAACTGTCATTGTTCATGCTGTAGCTCATTTTTGTTTTGGAACTATGGGAGAGCGACTCACTCTTCGAGTTAGAGAGAAGATGTTTTCTGCAATTTTGAGGAATGAGATCGGATGGTTTGATGATACAAACAACACCAGTTCTATGCTTTCATCGCGTCTAGAAAGTGATGCAACTTTATTACGAACTATTGTTGTTGATCGCTCAACAATTCTTATACAGAATGTGGGTTTGGTAGTTGCCTCATTTATCATTGCCTTCATCTTGAACTGGAGAATCACATTAGTGGTCTTAGCCACGTATCCTTTGATCATAAGTGGTCACATCAGCGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCACAGCATATCTGAAAGCTAACATGCTAGCTGGGGAAGCTGTAAGTAACATCCGCACTGTTGCTGCATTTTGTTCTGAGGAGAAGGTCATCGACCTATATGCTCATGAGCTTGTTGAGCCTTCTAGACGTTCATTTACTCGTGGTCAGATTGCTGGCATATTCTATGGTGTATCTCAGTTCTTCATATTCTCATCCTATGGCCTGGCCTTGTGGTATGGTTCTGTTTTGATGGAAAAGGAGCTTGCTACCTTTAAATCTGTCATGAAATCATTCTTTGTTTTGATTGTAACGGCATTAGCAATGGGTGAGACTTTAGCACTTGCCCCAGATCTTTTAAAAGGGAACCAAATGGTGGCATCAGTCTTTGATGTAACAGATCGTAGAACAGAAGTCCTAGGGGACGTAGGAGAAGAGGTTACGAAAGTGGAAGGGGCAATTGAGTTAAGGGGTGTTCAATTTAGCTACCCATCAAGACCAGACGTAGTGCTTTTCAGGGACTTCAATTTGAAAGTTCATTCAGGCAAAACTATGGCATTGGTGGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATTTCTCTAATTCTCAGATTTTATGATCCGACAGCTGGGAAAGTTATGGTAGATGGGAAAGACATCAAGAAACTCAATCTCAAATCTCTTCGAAGACACATTGGCCTGGTTCAACAAGAACCAGCTCTCTTTGCCACATCAATTTATGAAAACATCCTTTATGGAAAAGAAGGAGCTTCTGAAGCAGAGGTAATTGAAGCGGCCAAGCTTGCCAATGCACACAGTTACATTAGTGCCCTTCCTGAGGGCTACTCCACTAAAGTTGGGGAGCGAGGGGTGCAACTATCTGGTGGCCAAAGGCAAAGGGTGGCCATTGCCCGAGCAGTTCTAAAGAACCCTGAAATTTTGTTACTAGATGAGGCAACCAGCGCTCTAGATGTGGAGTCTGAGCGTGTGGTGCAACAAGCTCTTGATAGATTGATGAAGACCCGTACAACTATAATGGTGGCACATAGGCTGTCCACAATAAAAAATGCAGATGAAATTTCAGTCATACAAGATGGGAAGATTGTAGAGCAAGGAAGTCATTCAACTCTTATAGAGAACAGAAATGGAGCATATTACAAGTTAATAAACATTCAGCAGCAGCAGCAGCATTGA

Protein Analysis

1263

Amino Acids

138.57

Weight (kDa)

8.92

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 64 - 334 2.6e-44 ABC transporter transmembrane region
ABC_tran PF00005 405 - 553 3e-34 ABC transporter
ABC_membrane PF00664 702 - 972 1.9e-47 ABC transporter transmembrane region
ABC_tran PF00005 1039 - 1187 1.7e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10680 AT1G10680 AT4G25960
fragaria_vesca FvH4_5g22520 FvH4_5g22520 FvH4_5g22520 FvH4_5g22520 FvH4_5g22520 FvH4_5g22520
malus_domestica MD06G1037400.v1.1
prunus_persica Prupe.5G031600_v2.0.a1
pyrus_communis pycom06g03090
rosa_chinensis RchiOBHm_Chr7g0210291
rosa_laevigata RLG00000003051 RLG00000029346
rosa_multiflora Rmu_sc0003639.1_g000002
rosa_roxburghii Rroxscaffold_3G00248450
rosa_rugosa Rorug07G0120500
rosa_samantha Rh7AG253400 Rh7CG270300
rosa_wichuraiana Rw7G021600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2108
AccB1I GGYRCC 2 cut(s) 1976, 2108
AccB7I CCANNNNNTGG 2 cut(s) 1325, 2974
AccI GTMKAC 1 cut(s) 2062
AccII CGCG 1 cut(s) 2410
AciI CCGC 5 cut(s) 127, 669, 966, 2674, 3392
AclI AACGTT 1 cut(s) 132
AclWI GGATC 3 cut(s) 202, 2071, 3212
AcoI YGGCCR 7 cut(s) 861, 1126, 1327, 2008, 3393, 3484, 3501
AcsI RAATTY 2 cut(s) 3534, 3675
AcuI CTGAAG 5 cut(s) 164, 207, 495, 765, 3393
AcvI CACGTG 1 cut(s) 1610
AfaI GTAC 7 cut(s) 320, 648, 832, 1285, 1960, 2110, 3625
AfeI AGCGCT 1 cut(s) 3562
AflIII ACRYGT 1 cut(s) 69
AjnI CCWGG 3 cut(s) 2014, 2823, 3297
AjuI GAANNNNNNNTTGG 4 cut(s) 1536, 1568, 2468, 2500
AleI CACNNNNGTG 1 cut(s) 2537
Alw21I GWGCWC 3 cut(s) 948, 1663, 2624
Alw26I GTCTC 3 cut(s) 1868, 2167, 2924
Alw44I GTGCAC 1 cut(s) 944
AlwI GGATC 3 cut(s) 202, 2071, 3212
AlwNI CAGNNNCTG 3 cut(s) 230, 1031, 1676
Ama87I CYCGRG 2 cut(s) 2156, 3510
Aor51HI AGCGCT 1 cut(s) 3562
ApaLI GTGCAC 1 cut(s) 944
ApoI RAATTY 2 cut(s) 3534, 3675
ArsI GACNNNNNNTTYG 4 cut(s) 1867, 1899, 2301, 2333
Asp700I GAANNNNTTC 6 cut(s) 149, 1270, 1443, 2591, 2891, 3718
Asp718I GGTACC 1 cut(s) 2108
AspA2I CCTAGG 1 cut(s) 3016
AspLEI GCGC 3 cut(s) 221, 1030, 3563
AspS9I GGNCC 3 cut(s) 204, 369, 1907
AsuC2I CCSGG 1 cut(s) 1331
AsuHPI GGTGA 9 cut(s) 746, 763, 922, 970, 1472, 1568, 2033, 2113, 2939
AsuII TTCGAA 1 cut(s) 3283
AsuNHI GCTAGC 1 cut(s) 2647
AvaI CYCGRG 2 cut(s) 2156, 3510
AvaII GGWCC 2 cut(s) 369, 1907
AvrII CCTAGG 1 cut(s) 3016
AxyI CCTNAGG 1 cut(s) 3435
BaeGI GKGCMC 2 cut(s) 948, 3430
BalI TGGCCA 3 cut(s) 863, 3486, 3503
BanI GGYRCC 2 cut(s) 1976, 2108
BanII GRGCYC 2 cut(s) 884, 2137
BauI CACGAG 1 cut(s) 2760
BbrPI CACGTG 1 cut(s) 1610
BbsI GAAGAC 3 cut(s) 226, 3292, 3623
Bbv12I GWGCWC 3 cut(s) 948, 1663, 2624
BceAI ACGGC 4 cut(s) 61, 1995, 2193, 2928
BcgI CGANNNNNNTGC 2 cut(s) 2702, 2736
BciT130I CCWGG 3 cut(s) 2016, 2825, 3299
BciVI GTATCC 3 cut(s) 10, 1080, 2565
BclI TGATCA 1 cut(s) 2562
BcnI CCSGG 1 cut(s) 1331
BcoDI GTCTC 3 cut(s) 1868, 2167, 2924
BfmI CTRYAG 3 cut(s) 1962, 2247, 2274
BfoI RGCGCY 3 cut(s) 222, 1031, 3564
BfuI GTATCC 3 cut(s) 10, 1080, 2565
BglII AGATCT 3 cut(s) 1768, 2223, 2950
BlnI CCTAGG 1 cut(s) 3016
BmcAI AGTACT 1 cut(s) 320
Bme1390I CCNGG 4 cut(s) 1331, 2016, 2825, 3299
Bme18I GGWCC 2 cut(s) 369, 1907
BmeT110I CYCGRG 2 cut(s) 2156, 3510
BmgT120I GGNCC 3 cut(s) 204, 369, 1907
BmiI GGNNCC 8 cut(s) 205, 883, 1410, 1814, 1978, 2110, 2134, 2966
BmrFI CCNGG 4 cut(s) 1331, 2016, 2825, 3299
BmrI ACTGGG 4 cut(s) 405, 495, 1818, 2203
BmsI GCATC 7 cut(s) 378, 523, 1453, 1657, 2130, 2413, 2987
BmtI GCTAGC 1 cut(s) 2651
BmuI ACTGGG 4 cut(s) 405, 495, 1818, 2203
BpiI GAAGAC 3 cut(s) 226, 3292, 3623
BplI GAGNNNNNCTC 4 cut(s) 2295, 2327, 3428, 3460
BpmI CTGGAG 2 cut(s) 2151, 2545
Bpu14I TTCGAA 1 cut(s) 3283
BpuEI CTTGAG 2 cut(s) 1166, 2638
BpuMI CCSGG 1 cut(s) 1331
BsaAI YACGTR 2 cut(s) 1610, 2553
BsaBI GATNNNNATC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 2167
BsaJI CCNNGG 6 cut(s) 324, 372, 864, 1056, 1710, 3016
BsaXI ACNNNNNCTCC 2 cut(s) 3021, 3051
Bse21I CCTNAGG 1 cut(s) 3435
Bse3DI GCAATG 5 cut(s) 699, 2112, 2505, 2928, 3504
Bse8I GATNNNNATC 1 cut(s) 188
BseBI CCWGG 3 cut(s) 2016, 2825, 3299
BseDI CCNNGG 6 cut(s) 324, 372, 864, 1056, 1710, 3016
BseJI GATNNNNATC 1 cut(s) 188
BseMI GCAATG 5 cut(s) 699, 2112, 2505, 2928, 3504
BseRI GAGGAG 2 cut(s) 1835, 2714
BseSI GKGCMC 2 cut(s) 948, 3430
BseYI CCCAGC 4 cut(s) 877, 1238, 2651, 3227
BsgI GTGCAG 4 cut(s) 872, 877, 1509, 1709
Bsh1236I CGCG 1 cut(s) 2410
BshNI GGYRCC 2 cut(s) 1976, 2108
BsiHKAI GWGCWC 3 cut(s) 948, 1663, 2624
BsiHKCI CYCGRG 2 cut(s) 2156, 3510
BsiSI CCGG 4 cut(s) 14, 33, 1129, 1330
BslFI GGGAC 3 cut(s) 212, 3035, 3131
BsmAI GTCTC 3 cut(s) 1868, 2167, 2924
BsmFI GGGAC 3 cut(s) 212, 3035, 3131
BsmI GAATGC 2 cut(s) 1043, 1768
Bso31I GGTCTC 1 cut(s) 2167
BsoBI CYCGRG 2 cut(s) 2156, 3510
Bsp119I TTCGAA 1 cut(s) 3283
Bsp1286I GDGCHC 6 cut(s) 884, 948, 1663, 2137, 2624, 3430
Bsp19I CCATGG 1 cut(s) 1710
BspACI CCGC 5 cut(s) 127, 669, 966, 2674, 3392
BspFNI CGCG 1 cut(s) 2410
BspHI TCATGA 3 cut(s) 2595, 2725, 2883
BspLI GGNNCC 8 cut(s) 205, 883, 1410, 1814, 1978, 2110, 2134, 2966
BspMAI CTGCAG 1 cut(s) 2251
BspOI GCTAGC 1 cut(s) 2651
BspPI GGATC 3 cut(s) 202, 2071, 3212
BspQI GCTCTTC 1 cut(s) 155
BspT104I TTCGAA 1 cut(s) 3283
BspT107I GGYRCC 2 cut(s) 1976, 2108
BspTNI GGTCTC 1 cut(s) 2167
BsrDI GCAATG 5 cut(s) 699, 2112, 2505, 2928, 3504
BssECI CCNNGG 6 cut(s) 324, 372, 864, 1056, 1710, 3016
BssSI CACGAG 1 cut(s) 2760
BssT1I CCWWGG 5 cut(s) 324, 864, 1056, 1710, 3016
Bst2BI CACGAG 1 cut(s) 2760
Bst2UI CCWGG 3 cut(s) 2016, 2825, 3299
Bst6I CTCTTC 9 cut(s) 34, 102, 155, 741, 1676, 2240, 2322, 3027, 3285
BstAPI GCANNNNNTGC 1 cut(s) 1658
BstBAI YACGTR 2 cut(s) 1610, 2553
BstBI TTCGAA 1 cut(s) 3283
BstDSI CCRYGG 1 cut(s) 1710
BstENI CCTNNNNNAGG 2 cut(s) 1914, 3434
BstFNI CGCG 1 cut(s) 2410
BstH2I RGCGCY 3 cut(s) 222, 1031, 3564
BstHHI GCGC 3 cut(s) 221, 1030, 3563
BstMAI GTCTC 3 cut(s) 1868, 2167, 2924
BstNI CCWGG 3 cut(s) 2016, 2825, 3299
BstNSI RCATGY 3 cut(s) 73, 2208, 2647
BstSCI CCNGG 4 cut(s) 1329, 2014, 2823, 3297
BstSFI CTRYAG 3 cut(s) 1962, 2247, 2274
BstSLI GKGCMC 2 cut(s) 948, 3430
BstUI CGCG 1 cut(s) 2410
BstV2I GAAGAC 3 cut(s) 226, 3292, 3623
BstX2I RGATCY 4 cut(s) 194, 1768, 2223, 2950
BstXI CCANNNNNNTGG 1 cut(s) 871
BstYI RGATCY 4 cut(s) 194, 1768, 2223, 2950
Bsu36I CCTNAGG 1 cut(s) 3435
BsuI GTATCC 3 cut(s) 10, 1080, 2565
BtgI CCRYGG 1 cut(s) 1710
BtgZI GCGATG 1 cut(s) 2391
BtsI GCAGTG 2 cut(s) 889, 2256
CaiI CAGNNNCTG 3 cut(s) 230, 1031, 1676
CciI TCATGA 3 cut(s) 2595, 2725, 2883
CfoI GCGC 3 cut(s) 221, 1030, 3563
Cfr13I GGNCC 3 cut(s) 204, 369, 1907
CseI GACGC 1 cut(s) 2399
Csp6I GTAC 7 cut(s) 319, 647, 831, 1284, 1959, 2109, 3624
CspCI CAANNNNNGTGG 2 cut(s) 3436, 3471
CviQI GTAC 7 cut(s) 319, 647, 831, 1284, 1959, 2109, 3624
DraI TTTAAA 2 cut(s) 2875, 2958
EaeI YGGCCR 7 cut(s) 861, 1126, 1327, 2008, 3393, 3484, 3501
Eam1104I CTCTTC 9 cut(s) 34, 102, 155, 741, 1676, 2240, 2322, 3027, 3285
EarI CTCTTC 9 cut(s) 34, 102, 155, 741, 1676, 2240, 2322, 3027, 3285
Eco130I CCWWGG 5 cut(s) 324, 864, 1056, 1710, 3016
Eco24I GRGCYC 2 cut(s) 884, 2137
Eco31I GGTCTC 1 cut(s) 2167
Eco32I GATATC 2 cut(s) 1231, 1480
Eco47I GGWCC 2 cut(s) 369, 1907
Eco47III AGCGCT 1 cut(s) 3562
Eco57I CTGAAG 5 cut(s) 164, 207, 495, 765, 3393
Eco72I CACGTG 1 cut(s) 1610
Eco81I CCTNAGG 1 cut(s) 3435
Eco88I CYCGRG 2 cut(s) 2156, 3510
EcoNI CCTNNNNNAGG 2 cut(s) 1914, 3434
EcoO109I RGGNCCY 1 cut(s) 204
EcoRII CCWGG 3 cut(s) 2014, 2823, 3297
EcoRV GATATC 2 cut(s) 1231, 1480
EcoT14I CCWWGG 5 cut(s) 324, 864, 1056, 1710, 3016
EcoT38I GRGCYC 2 cut(s) 884, 2137
ErhI CCWWGG 5 cut(s) 324, 864, 1056, 1710, 3016
FalI AAGNNNNNCTT 6 cut(s) 308, 340, 522, 554, 1989, 2021
FaqI GGGAC 3 cut(s) 212, 3035, 3131
FbaI TGATCA 1 cut(s) 2562
FblI GTMKAC 1 cut(s) 2062
FriOI GRGCYC 2 cut(s) 884, 2137
GlaI GCGC 3 cut(s) 220, 1029, 3562
GsaI CCCAGC 4 cut(s) 881, 1242, 2655, 3231
GsuI CTGGAG 2 cut(s) 2151, 2545
HaeII RGCGCY 3 cut(s) 222, 1031, 3564
HapII CCGG 4 cut(s) 14, 33, 1129, 1330
HgaI GACGC 1 cut(s) 2399
HhaI GCGC 3 cut(s) 221, 1030, 3563
Hin6I GCGC 3 cut(s) 219, 1028, 3561
HinP1I GCGC 3 cut(s) 219, 1028, 3561
HindIII AAGCTT 3 cut(s) 297, 477, 3398
HpaII CCGG 4 cut(s) 14, 33, 1129, 1330
HphI GGTGA 9 cut(s) 746, 763, 922, 970, 1472, 1568, 2033, 2113, 2939
Hpy166II GTNNAC 7 cut(s) 43, 930, 946, 1105, 1752, 2063, 3654
Hpy8I GTNNAC 7 cut(s) 43, 930, 946, 1105, 1752, 2063, 3654
Hpy99I CGWCG 2 cut(s) 65, 68
HpyAV CCTTC 8 cut(s) 85, 541, 2521, 2698, 2751, 3044, 3356, 3440
HpyCH4IV ACGT 8 cut(s) 39, 132, 1486, 1609, 2552, 2749, 3024, 3102
HpySE526I ACGT 8 cut(s) 39, 132, 1486, 1609, 2552, 2749, 3024, 3102
HspAI GCGC 3 cut(s) 219, 1028, 3561
KpnI GGTACC 1 cut(s) 2112
Ksp22I TGATCA 1 cut(s) 2562
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 9 cut(s) 887, 1408, 1812, 1822, 2132, 2860, 3365, 3460, 3746
LweI GCATC 7 cut(s) 378, 523, 1453, 1657, 2130, 2413, 2987
MaeII ACGT 8 cut(s) 39, 132, 1486, 1609, 2552, 2749, 3024, 3102
MfeI CAATTG 2 cut(s) 597, 3057
MflI RGATCY 4 cut(s) 194, 1768, 2223, 2950
MhlI GDGCHC 6 cut(s) 884, 948, 1663, 2137, 2624, 3430
MlsI TGGCCA 3 cut(s) 863, 3486, 3503
MluNI TGGCCA 3 cut(s) 863, 3486, 3503
MlyI GAGTC 5 cut(s) 717, 980, 1682, 2304, 3584
MmeI TCCRAC 2 cut(s) 365, 3245
Mox20I TGGCCA 3 cut(s) 863, 3486, 3503
MroXI GAANNNNTTC 6 cut(s) 149, 1270, 1443, 2591, 2891, 3718
MscI TGGCCA 3 cut(s) 863, 3486, 3503
MseI TTAA 7 cut(s) 990, 2037, 2217, 2874, 2957, 3065, 3761
MslI CAYNNNNRTG 2 cut(s) 983, 2537
Msp20I TGGCCA 3 cut(s) 863, 3486, 3503
MspA1I CMGCKG 2 cut(s) 1064, 3227
MspI CCGG 4 cut(s) 14, 33, 1129, 1330
MspR9I CCNGG 4 cut(s) 1331, 2016, 2825, 3299
MunI CAATTG 2 cut(s) 597, 3057
Mva1269I GAATGC 2 cut(s) 1043, 1768
MvaI CCWGG 3 cut(s) 2016, 2825, 3299
MvnI CGCG 1 cut(s) 2410
NciI CCSGG 1 cut(s) 1331
NcoI CCATGG 1 cut(s) 1710
NheI GCTAGC 1 cut(s) 2647
NlaIV GGNNCC 8 cut(s) 205, 883, 1410, 1814, 1978, 2110, 2134, 2966
NmuCI GTSAC 5 cut(s) 512, 631, 685, 1011, 2573
NspI RCATGY 3 cut(s) 73, 2208, 2647
NspV TTCGAA 1 cut(s) 3283
OliI CACNNNNGTG 1 cut(s) 2537
PagI TCATGA 3 cut(s) 2595, 2725, 2883
PciI ACATGT 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 2 cut(s) 1043, 1768
PdmI GAANNNNTTC 6 cut(s) 149, 1270, 1443, 2591, 2891, 3718
PfeI GAWTC 7 cut(s) 164, 448, 591, 1308, 1624, 2000, 2529
PflMI CCANNNNNTGG 2 cut(s) 1325, 2974
PleI GAGTC 5 cut(s) 716, 979, 1681, 2304, 3583
PmaCI CACGTG 1 cut(s) 1610
PmlI CACGTG 1 cut(s) 1610
PpsI GAGTC 5 cut(s) 716, 979, 1681, 2304, 3583
Ppu21I YACGTR 2 cut(s) 1610, 2553
PscI ACATGT 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 132
Psp6I CCWGG 3 cut(s) 2014, 2823, 3297
PspCI CACGTG 1 cut(s) 1610
PspFI CCCAGC 4 cut(s) 877, 1238, 2651, 3227
PspGI CCWGG 3 cut(s) 2014, 2823, 3297
PspN4I GGNNCC 8 cut(s) 205, 883, 1410, 1814, 1978, 2110, 2134, 2966
PspPI GGNCC 3 cut(s) 204, 369, 1907
PstI CTGCAG 1 cut(s) 2251
PstNI CAGNNNCTG 3 cut(s) 230, 1031, 1676
PsuI RGATCY 4 cut(s) 194, 1768, 2223, 2950
PvuII CAGCTG 2 cut(s) 1064, 3227
RsaI GTAC 7 cut(s) 320, 648, 832, 1285, 1960, 2110, 3625
RsaNI GTAC 7 cut(s) 319, 647, 831, 1284, 1959, 2109, 3624
RseI CAYNNNNRTG 2 cut(s) 983, 2537
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 7 cut(s) 990, 2037, 2217, 2874, 2957, 3065, 3761
Sau96I GGNCC 3 cut(s) 204, 369, 1907
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 5 cut(s) 717, 980, 1682, 2304, 3584
ScrFI CCNGG 4 cut(s) 1331, 2016, 2825, 3299
SduI GDGCHC 6 cut(s) 884, 948, 1663, 2137, 2624, 3430
SfaNI GCATC 7 cut(s) 378, 523, 1453, 1657, 2130, 2413, 2987
SfcI CTRYAG 3 cut(s) 1962, 2247, 2274
SfuI TTCGAA 1 cut(s) 3283
SinI GGWCC 2 cut(s) 369, 1907
SmiMI CAYNNNNRTG 2 cut(s) 983, 2537
SmlI CTYRAG 2 cut(s) 1145, 2617
SmoI CTYRAG 2 cut(s) 1145, 2617
SsiI CCGC 5 cut(s) 127, 669, 966, 2674, 3392
SspI AATATT 1 cut(s) 1444
StyD4I CCNGG 4 cut(s) 1329, 2014, 2823, 3297
StyI CCWWGG 5 cut(s) 324, 864, 1056, 1710, 3016
TaiI ACGT 8 cut(s) 42, 135, 1489, 1612, 2555, 2752, 3027, 3105
TaqI TCGA 4 cut(s) 468, 2320, 2712, 3283
TaqII GACCGA 1 cut(s) 386
TatI WGTACW 2 cut(s) 318, 1283
TauI GCSGC 2 cut(s) 969, 3395
TfiI GAWTC 7 cut(s) 164, 448, 591, 1308, 1624, 2000, 2529
Tru1I TTAA 7 cut(s) 990, 2037, 2217, 2874, 2957, 3065, 3761
Tru9I TTAA 7 cut(s) 990, 2037, 2217, 2874, 2957, 3065, 3761
TseFI GTSAC 5 cut(s) 512, 631, 685, 1011, 2573
Tsp45I GTSAC 5 cut(s) 512, 631, 685, 1011, 2573
TspGWI ACGGA 2 cut(s) 1359, 2069
Van91I CCANNNNNTGG 2 cut(s) 1325, 2974
VneI GTGCAC 1 cut(s) 944
VpaK11BI GGWCC 2 cut(s) 369, 1907
XagI CCTNNNNNAGG 2 cut(s) 1914, 3434
XapI RAATTY 2 cut(s) 3534, 3675
XbaI TCTAGA 3 cut(s) 2413, 2744, 3565
XceI RCATGY 3 cut(s) 73, 2208, 2647
XcmI CCANNNNNNNNNTGG 2 cut(s) 322, 1901
XmaJI CCTAGG 1 cut(s) 3016
XmiI GTMKAC 1 cut(s) 2062
XmnI GAANNNNTTC 6 cut(s) 149, 1270, 1443, 2591, 2891, 3718
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.