Rorug07G0120500

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0009779
Physical Location & Seq
Forward (+)
9431293 .. 9432092
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0120500.1

Sequence Viewer

Length: 435 bp
ATGAAGAAAAAGTTACAGAATGACCATGAACAAGAACTTGAAATCCTCAAGGCTGTGGCACAAGCCTGGCAGAGCATCAGCAACTCCGGCAGCTCTAGGCCCATGACGGAGTTTGACGCGCGCCGGAGAAACTACAAGGGCAGGTTACCGTCTCGGTTCAAGCTCGAAGCAATGAGAAAAGCAGCATCATCTAGTGAGAGTGGTACCAATGCAAAATGGGACTTTGGACAATCACTGTGGGATGCTTATGAGATTGTGGCAGTGTCCAAAAGGTTAGAGTCAGGGTTAGTACTTGATGGTGAGCTAGATGGTTCTTCGGGTAGGGTCCATCGGAGGCGTAGAGAGAGTAAGAACAGCCTCAGGAATTTTTTTGATAAAAGGTCTTCAAGGAGATATACTGAGGCTGTTATACCACACACTGATGATGATACTTAA

Protein Analysis

144

Amino Acids

16.55

Weight (kDa)

9.86

Isoelectric Point (pI)

72.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10680 AT1G10680 AT4G25960
fragaria_vesca FvH4_5g22520 FvH4_5g22520 FvH4_5g22520 FvH4_5g22520 FvH4_5g22520 FvH4_5g22520
malus_domestica MD06G1037400.v1.1
prunus_persica Prupe.5G031600_v2.0.a1
pyrus_communis pycom06g03090
rosa_chinensis RchiOBHm_Chr7g0210291
rosa_laevigata RLG00000003051 RLG00000029346
rosa_multiflora Rmu_sc0003639.1_g000002
rosa_roxburghii Rroxscaffold_3G00248450
rosa_rugosa Rorug07G0120500
rosa_samantha Rh7AG253400 Rh7CG270300
rosa_wichuraiana Rw7G021600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 132
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AccII CGCG 2 cut(s) 119, 121
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 2 cut(s) 205, 291
AgsI TTSAA 3 cut(s) 41, 160, 387
AjnI CCWGG 1 cut(s) 65
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
AluBI AGCT 3 cut(s) 93, 163, 304
AluI AGCT 3 cut(s) 93, 163, 304
Alw26I GTCTC 1 cut(s) 156
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 90, 182
ApoI RAATTY 1 cut(s) 364
Asp718I GGTACC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 121, 123
AspS9I GGNCC 2 cut(s) 99, 325
AsuHPI GGTGA 1 cut(s) 311
AvaII GGWCC 1 cut(s) 325
AxyI CCTNAGG 1 cut(s) 359
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 102, 194
BccI CCATC 3 cut(s) 290, 302, 336
BciT130I CCWGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 3 cut(s) 96, 192, 305
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 2 cut(s) 91, 183
BlsI GCNGC 2 cut(s) 92, 184
BmcAI AGTACT 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 99, 325
BmiI GGNNCC 2 cut(s) 205, 326
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 3 cut(s) 84, 194, 232
BpiI GAAGAC 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 32
Bse21I CCTNAGG 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 373, 390
BsePI GCGCGC 1 cut(s) 119
BseXI GCAGC 2 cut(s) 102, 194
Bsh1236I CGCG 2 cut(s) 119, 121
BshFI GGCC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 87, 124
BslFI GGGAC 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 156
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 1 cut(s) 100
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 2 cut(s) 372, 391
BspFNI CGCG 2 cut(s) 119, 121
BspLI GGNNCC 2 cut(s) 205, 326
BspMI ACCTGC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 177
BssHII GCGCGC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 150, 237
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 359, 399
BstEII GGTNACC 1 cut(s) 144
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 2 cut(s) 119, 121
BstHHI GCGC 2 cut(s) 121, 123
BstMAI GTCTC 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 67
BstPI GGTNACC 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 65
BstUI CGCG 2 cut(s) 119, 121
BstV1I GCAGC 2 cut(s) 102, 194
BstV2I GAAGAC 1 cut(s) 375
Bsu36I CCTNAGG 1 cut(s) 359
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 3 cut(s) 233, 267, 417
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 2 cut(s) 121, 123
Cfr13I GGNCC 2 cut(s) 99, 325
CseI GACGC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 204, 290
CspCI CAANNNNNGTGG 2 cut(s) 218, 253
CviAII CATG 2 cut(s) 26, 103
CviJI RGCY 8 cut(s) 53, 65, 93, 100, 163, 304, 357, 404
CviKI_1 RGCY 8 cut(s) 53, 65, 93, 100, 163, 304, 357, 404
CviQI GTAC 2 cut(s) 204, 290
DdeI CTNAG 2 cut(s) 359, 399
Eco47I GGWCC 1 cut(s) 325
Eco81I CCTNAGG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 65
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 2 cut(s) 29, 106
FaiI YATR 5 cut(s) 27, 104, 249, 396, 410
FaqI GGGAC 1 cut(s) 233
FatI CATG 2 cut(s) 25, 102
Fnu4HI GCNGC 2 cut(s) 91, 183
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 91, 183
FspBI CTAG 3 cut(s) 96, 192, 305
GlaI GCGC 2 cut(s) 120, 122
GluI GCNGC 2 cut(s) 91, 183
HaeIII GGCC 1 cut(s) 100
HapII CCGG 2 cut(s) 87, 124
HgaI GACGC 1 cut(s) 125
HhaI GCGC 2 cut(s) 121, 123
Hin1II CATG 2 cut(s) 29, 106
Hin6I GCGC 2 cut(s) 119, 121
HinP1I GCGC 2 cut(s) 119, 121
HinfI GANTC 1 cut(s) 278
HpaII CCGG 2 cut(s) 87, 124
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 1 cut(s) 361
HpyCH4III ACNGT 2 cut(s) 150, 237
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 2 cut(s) 359, 399
Hsp92II CATG 2 cut(s) 29, 106
HspAI GCGC 2 cut(s) 119, 121
KpnI GGTACC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 52, 79, 100, 127, 137, 267, 346
Lsp1109I GCAGC 2 cut(s) 102, 194
LweI GCATC 3 cut(s) 84, 194, 232
MaeI CTAG 3 cut(s) 96, 192, 305
MaeIII GTNAC 2 cut(s) 12, 144
MboII GAAGA 3 cut(s) 16, 306, 375
MluCI AATT 1 cut(s) 364
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 4 cut(s) 56, 327, 368, 394
MseI TTAA 1 cut(s) 433
MslI CAYNNNNRTG 1 cut(s) 420
MspI CCGG 2 cut(s) 87, 124
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
MvnI CGCG 2 cut(s) 119, 121
MwoI GCNNNNNNNGC 1 cut(s) 87
NlaIII CATG 2 cut(s) 29, 106
NlaIV GGNNCC 2 cut(s) 205, 326
PauI GCGCGC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 92, 184
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 65
PspEI GGTNACC 1 cut(s) 144
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 205, 326
PspPI GGNCC 2 cut(s) 99, 325
PteI GCGCGC 1 cut(s) 119
RsaI GTAC 2 cut(s) 205, 291
RsaNI GTAC 2 cut(s) 204, 290
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 2 cut(s) 91, 183
Sau96I GGNCC 2 cut(s) 99, 325
ScaI AGTACT 1 cut(s) 291
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 67
SetI ASST 6 cut(s) 95, 146, 165, 275, 306, 383
SfaNI GCATC 3 cut(s) 84, 194, 232
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 364
SspMI CTAG 3 cut(s) 96, 192, 305
StyD4I CCNGG 1 cut(s) 65
TaaI ACNGT 2 cut(s) 150, 237
TaqI TCGA 1 cut(s) 165
TasI AATT 1 cut(s) 364
TatI WGTACW 1 cut(s) 289
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TscAI CASTG 3 cut(s) 240, 267, 424
TseI GCWGC 2 cut(s) 90, 182
TspDTI ATGAA 2 cut(s) 17, 42
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 3 cut(s) 240, 267, 424
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 1 cut(s) 364
XspI CTAG 3 cut(s) 96, 192, 305
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.