pycom06g04580

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013964
Physical Location & Seq
Forward (+)
5950261 .. 5951740
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 936 bp
ATGATGGTTGAAAGAGAAGATTTGGGTCTCAGTCTCAGCTTGAATTTTCCTCACACCCATAACAATCAAAGTAGCAGCCGCTTTCAGCTGAATCTGATGCCTTCTCTCCTCCCAACTTCTGCTTCTGCTTCTTCTTCTCCTTCTGGCTTTCTTCCCCAAAAGCCCCTCTGGAATGATCCCTTGCCTTCTTCAGATCTAAACTCTAACTCGGAGACGCGCCGGGGCGGGCCCCGATCGTTCCTGCGGGGCATCGACGTGAACCAGCTGCCACCGACGGGCGATTGCGAAGAAGAAGCGGGGGTGTCCTCCCCCAACAGCACCGTGTCGACCGTGAGTGGCAAGCGGAGCGAGAGAGACACCAATGGCGAAGATCTCGACCTCGAGAGGGACTGCTCTCGAGGCCTCAGCGACGAAGAGGACGGCGAGACCTCCAGAAAGAAGCTCAGGCTCTCTAAGGACCAGTCCGCCATTCTCGAAGAGAGCTTCAAGGAGCACAACACTCTCAACCCTAAGCAAAAATTGGCGTTGGCGAAACAGCTTGGGCTTCGGTCTAGACAAGTGGAAGTCTGGTTTCAGAACAGAAGAGCAAGAACAAAGCTGAAGCAAACAGAGGTGGACTGTGAGTTCTTGAAGAGGTGCTGTGAGAATCTGACGGAGCGGAACAGGCGGTTGCAAAAAGAGGTTCAGGAGCTGAGAGCACTGAAACTTTCCCCGCAGTTCTACATGCAGATGACCCCACCCACAACACTCACCATGTGCCCCTCGTGTGAGCGTGTCGGGGTCCCACCCAACTCCTCATCGTCCGCGGCCGTTCCCCGGCCCCACTCGCAAATGGGGCCCGTCCAGCCGCATCCGTTGCCCATCAACCCCTGGCCCTCCGCCACGACCGTCCCCCACCGGCCGTTGCCGTTCGATATCTTCCATCCCCGGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ HD-ZIP_N Homeobox

Protein Analysis

312

Amino Acids

34.85

Weight (kDa)

8.48

Isoelectric Point (pI)

69.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD-ZIP_N PF04618 2 - 119 2e-30 HD-ZIP protein N terminus
Homeodomain PF00046 145 - 199 7e-16 Homeodomain
HALZ PF02183 201 - 235 6.7e-10 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16780
fragaria_vesca FvH4_5g19570
malus_domestica MD04G1061200.v1.1 MD06G1054800.v1.1
prunus_persica Prupe.5G064300_v2.0.a1
pyrus_communis pycom04g05500 pycom06g04580
rosa_chinensis RchiOBHm_Chr7g0204271
rosa_laevigata RLG00000003479
rosa_multiflora Rmu_sc0004975.1_g000005
rosa_roxburghii Rroxscaffold_3G00253270
rosa_rugosa Rorug07G0081500
rosa_samantha Rh7AG212100 Rh7BG210300 Rh7CG224200 Rh7DG219000
rosa_wichuraiana Rw7G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 658
AccI GTMKAC 1 cut(s) 326
AccII CGCG 2 cut(s) 217, 806
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 2 cut(s) 807, 899
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 2 cut(s) 174, 620
AdeI CACNNNGTG 1 cut(s) 756
AfiI CCNNNNNNNGG 3 cut(s) 275, 385, 816
AgsI TTSAA 4 cut(s) 11, 43, 487, 631
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 869
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AloI GAACNNNNNNTCC 2 cut(s) 608, 640
AluBI AGCT 8 cut(s) 39, 88, 265, 442, 483, 538, 598, 691
AluI AGCT 8 cut(s) 39, 88, 265, 442, 483, 538, 598, 691
Alw21I GWGCWC 2 cut(s) 495, 700
Alw26I GTCTC 5 cut(s) 32, 38, 206, 348, 419
AlwI GGATC 1 cut(s) 170
AlwNI CAGNNNCTG 1 cut(s) 691
Ama87I CYCGRG 2 cut(s) 380, 396
AoxI GGCC 7 cut(s) 227, 400, 807, 818, 836, 872, 899
ApaI GGGCCC 2 cut(s) 231, 840
ApeKI GCWGC 2 cut(s) 75, 265
ApoI RAATTY 1 cut(s) 43
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 8 cut(s) 227, 228, 457, 781, 819, 836, 837, 873
AsuC2I CCSGG 3 cut(s) 221, 817, 928
AsuHPI GGTGA 1 cut(s) 742
AvaI CYCGRG 2 cut(s) 380, 396
AvaII GGWCC 2 cut(s) 457, 781
BaeGI GKGCMC 3 cut(s) 231, 761, 840
BanII GRGCYC 2 cut(s) 231, 840
BauI CACGAG 1 cut(s) 763
Bbv12I GWGCWC 2 cut(s) 495, 700
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 2 cut(s) 87, 252
BccI CCATC 2 cut(s) 869, 930
BceAI ACGGC 4 cut(s) 436, 794, 886, 892
BciT130I CCWGG 1 cut(s) 871
BcnI CCSGG 3 cut(s) 221, 817, 928
BcoDI GTCTC 5 cut(s) 32, 38, 206, 348, 419
BfaI CTAG 1 cut(s) 552
BglII AGATCT 2 cut(s) 193, 370
BisI GCNGC 5 cut(s) 76, 79, 266, 807, 848
BlsI GCNGC 5 cut(s) 77, 80, 267, 808, 849
Bme1390I CCNGG 4 cut(s) 221, 817, 871, 928
Bme18I GGWCC 2 cut(s) 457, 781
BmeT110I CYCGRG 2 cut(s) 380, 396
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 8 cut(s) 227, 228, 457, 781, 819, 836, 837, 873
BmiI GGNNCC 7 cut(s) 229, 230, 782, 783, 821, 837, 838
BmrFI CCNGG 4 cut(s) 221, 817, 871, 928
BmsI GCATC 3 cut(s) 87, 258, 859
BpmI CTGGAG 1 cut(s) 415
Bpu10I CCTNAGC 3 cut(s) 404, 443, 510
BpuMI CCSGG 3 cut(s) 221, 817, 928
BsaI GGTCTC 2 cut(s) 32, 419
BsaJI CCNNGG 5 cut(s) 220, 804, 815, 869, 926
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 385, 816
Bse118I RCCGGY 1 cut(s) 897
Bse1I ACTGG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 871
BseDI CCNNGG 5 cut(s) 220, 804, 815, 869, 926
BseGI GGATG 2 cut(s) 850, 922
BseLI CCNNNNNNNGG 3 cut(s) 275, 385, 816
BseMII CTCAG 5 cut(s) 43, 49, 418, 457, 683
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 2 cut(s) 98, 784
BseSI GKGCMC 3 cut(s) 231, 761, 840
BseX3I CGGCCG 2 cut(s) 807, 899
BseXI GCAGC 2 cut(s) 87, 252
Bsh1236I CGCG 2 cut(s) 217, 806
Bsh1285I CGRYCG 6 cut(s) 236, 330, 810, 888, 902, 932
BshFI GGCC 7 cut(s) 229, 402, 809, 820, 838, 874, 901
BsiEI CGRYCG 6 cut(s) 236, 330, 810, 888, 902, 932
BsiHKAI GWGCWC 2 cut(s) 495, 700
BsiHKCI CYCGRG 2 cut(s) 380, 396
BsiSI CCGG 4 cut(s) 220, 817, 898, 928
BslFI GGGAC 3 cut(s) 401, 767, 875
BslI CCNNNNNNNGG 3 cut(s) 275, 385, 816
BsmAI GTCTC 5 cut(s) 32, 38, 206, 348, 419
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 3 cut(s) 401, 767, 875
BsnI GGCC 7 cut(s) 229, 402, 809, 820, 838, 874, 901
Bso31I GGTCTC 2 cut(s) 32, 419
BsoBI CYCGRG 2 cut(s) 380, 396
Bsp120I GGGCCC 2 cut(s) 227, 836
Bsp1286I GDGCHC 5 cut(s) 231, 495, 700, 761, 840
Bsp143I GATC 4 cut(s) 175, 193, 233, 370
BspANI GGCC 7 cut(s) 229, 402, 809, 820, 838, 874, 901
BspCNI CTCAG 5 cut(s) 42, 48, 417, 456, 684
BspFNI CGCG 2 cut(s) 217, 806
BspLI GGNNCC 7 cut(s) 229, 230, 782, 783, 821, 837, 838
BspPI GGATC 1 cut(s) 170
BspQI GCTCTTC 1 cut(s) 577
BspTNI GGTCTC 2 cut(s) 32, 419
BsrBI CCGCTC 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 897
BsrI ACTGG 1 cut(s) 460
BssAI RCCGGY 1 cut(s) 897
BssECI CCNNGG 5 cut(s) 220, 804, 815, 869, 926
BssMI GATC 4 cut(s) 175, 193, 233, 370
BssSI CACGAG 1 cut(s) 763
Bst2BI CACGAG 1 cut(s) 763
Bst2UI CCWGG 1 cut(s) 871
Bst4CI ACNGT 4 cut(s) 322, 331, 620, 889
Bst6I CTCTTC 4 cut(s) 408, 471, 577, 626
BstAPI GCANNNNNTGC 1 cut(s) 856
BstC8I GCNNGC 2 cut(s) 227, 341
BstDEI CTNAG 7 cut(s) 29, 35, 404, 443, 453, 510, 692
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 2 cut(s) 850, 922
BstFNI CGCG 2 cut(s) 217, 806
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 4 cut(s) 178, 196, 236, 373
BstMAI GTCTC 5 cut(s) 32, 38, 206, 348, 419
BstMBI GATC 4 cut(s) 175, 193, 233, 370
BstMCI CGRYCG 6 cut(s) 236, 330, 810, 888, 902, 932
BstMWI GCNNNNNNNGC 7 cut(s) 345, 399, 664, 826, 835, 844, 856
BstNI CCWGG 1 cut(s) 871
BstNSI RCATGY 1 cut(s) 727
BstSCI CCNGG 4 cut(s) 219, 815, 869, 926
BstSLI GKGCMC 3 cut(s) 231, 761, 840
BstUI CGCG 2 cut(s) 217, 806
BstV1I GCAGC 2 cut(s) 87, 252
BstX2I RGATCY 2 cut(s) 193, 370
BstYI RGATCY 2 cut(s) 193, 370
BstZI CGGCCG 2 cut(s) 807, 899
BsuRI GGCC 7 cut(s) 229, 402, 809, 820, 838, 874, 901
BtgI CCRYGG 1 cut(s) 804
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 2 cut(s) 850, 922
BtsIMutI CAGTG 1 cut(s) 698
Cac8I GCNNGC 2 cut(s) 227, 341
CaiI CAGNNNCTG 1 cut(s) 691
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 897
Cfr13I GGNCC 8 cut(s) 227, 228, 457, 781, 819, 836, 837, 873
Cfr42I CCGCGG 1 cut(s) 807
CseI GACGC 1 cut(s) 223
CviAII CATG 2 cut(s) 724, 754
DdeI CTNAG 7 cut(s) 29, 35, 404, 443, 453, 510, 692
DpnI GATC 4 cut(s) 177, 195, 235, 372
DpnII GATC 4 cut(s) 175, 193, 233, 370
DraIII CACNNNGTG 1 cut(s) 756
EaeI YGGCCR 2 cut(s) 807, 899
EagI CGGCCG 2 cut(s) 807, 899
Eam1104I CTCTTC 4 cut(s) 408, 471, 577, 626
EarI CTCTTC 4 cut(s) 408, 471, 577, 626
EciI GGCGGA 2 cut(s) 454, 868
EclXI CGGCCG 2 cut(s) 807, 899
Eco147I AGGCCT 1 cut(s) 402
Eco24I GRGCYC 2 cut(s) 231, 840
Eco31I GGTCTC 2 cut(s) 32, 419
Eco32I GATATC 1 cut(s) 916
Eco47I GGWCC 2 cut(s) 457, 781
Eco52I CGGCCG 2 cut(s) 807, 899
Eco57I CTGAAG 2 cut(s) 174, 620
Eco88I CYCGRG 2 cut(s) 380, 396
EcoO109I RGGNCCY 3 cut(s) 228, 781, 836
EcoRII CCWGG 1 cut(s) 869
EcoRV GATATC 1 cut(s) 916
EcoT38I GRGCYC 2 cut(s) 231, 840
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 2 cut(s) 727, 757
FaiI YATR 3 cut(s) 60, 725, 755
FaqI GGGAC 3 cut(s) 401, 767, 875
FatI CATG 2 cut(s) 723, 753
FauI CCCGC 4 cut(s) 218, 237, 289, 720
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 5 cut(s) 76, 79, 266, 807, 848
FokI GGATG 2 cut(s) 837, 909
FriOI GRGCYC 2 cut(s) 231, 840
Fsp4HI GCNGC 5 cut(s) 76, 79, 266, 807, 848
FspBI CTAG 1 cut(s) 552
GlaI GCGC 1 cut(s) 218
GluI GCNGC 5 cut(s) 76, 79, 266, 807, 848
GsuI CTGGAG 1 cut(s) 415
HaeIII GGCC 7 cut(s) 229, 402, 809, 820, 838, 874, 901
HapII CCGG 4 cut(s) 220, 817, 898, 928
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 219
Hin1II CATG 2 cut(s) 727, 757
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 2 cut(s) 91, 646
HpaII CCGG 4 cut(s) 220, 817, 898, 928
HphI GGTGA 1 cut(s) 742
Hpy166II GTNNAC 3 cut(s) 259, 327, 616
Hpy188I TCNGA 5 cut(s) 96, 193, 211, 576, 651
Hpy188III TCNNGA 9 cut(s) 169, 374, 382, 396, 432, 473, 552, 628, 686
Hpy8I GTNNAC 3 cut(s) 259, 327, 616
Hpy99I CGWCG 3 cut(s) 257, 277, 413
HpyAV CCTTC 3 cut(s) 111, 150, 195
HpyCH4III ACNGT 4 cut(s) 322, 331, 620, 889
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 673, 727
HpyF10VI GCNNNNNNNGC 7 cut(s) 345, 399, 664, 826, 835, 844, 856
HpyF3I CTNAG 7 cut(s) 29, 35, 404, 443, 453, 510, 692
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 2 cut(s) 727, 757
HspAI GCGC 1 cut(s) 217
KflI GGGWCCC 1 cut(s) 781
KspI CCGCGG 1 cut(s) 807
Kzo9I GATC 4 cut(s) 175, 193, 233, 370
LguI GCTCTTC 1 cut(s) 577
LmnI GCTCC 4 cut(s) 345, 490, 655, 688
Lsp1109I GCAGC 2 cut(s) 87, 252
LweI GCATC 3 cut(s) 87, 258, 859
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 255
MalI GATC 4 cut(s) 177, 195, 235, 372
MbiI CCGCTC 1 cut(s) 658
MboI GATC 4 cut(s) 175, 193, 233, 370
MflI RGATCY 2 cut(s) 193, 370
MhlI GDGCHC 5 cut(s) 231, 495, 700, 761, 840
MluCI AATT 2 cut(s) 43, 518
MslI CAYNNNNRTG 2 cut(s) 254, 728
MspA1I CMGCKG 3 cut(s) 88, 265, 806
MspI CCGG 4 cut(s) 220, 817, 898, 928
MspR9I CCNGG 4 cut(s) 221, 817, 871, 928
MvaI CCWGG 1 cut(s) 871
MvnI CGCG 2 cut(s) 217, 806
MwoI GCNNNNNNNGC 7 cut(s) 345, 399, 664, 826, 835, 844, 856
NciI CCSGG 3 cut(s) 221, 817, 928
NdeII GATC 4 cut(s) 175, 193, 233, 370
NlaIII CATG 2 cut(s) 727, 757
NlaIV GGNNCC 7 cut(s) 229, 230, 782, 783, 821, 837, 838
NspI RCATGY 1 cut(s) 727
PaeR7I CTCGAG 2 cut(s) 380, 396
PceI AGGCCT 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 577
PfeI GAWTC 2 cut(s) 91, 646
PkrI GCNGC 5 cut(s) 77, 80, 267, 808, 849
Ple19I CGATCG 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 781
Psp5II RGGWCCY 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 869
PspGI CCWGG 1 cut(s) 869
PspN4I GGNNCC 7 cut(s) 229, 230, 782, 783, 821, 837, 838
PspOMI GGGCCC 2 cut(s) 227, 836
PspPI GGNCC 8 cut(s) 227, 228, 457, 781, 819, 836, 837, 873
PspPPI RGGWCCY 1 cut(s) 781
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 2 cut(s) 193, 370
PvuI CGATCG 1 cut(s) 236
PvuII CAGCTG 2 cut(s) 88, 265
RseI CAYNNNNRTG 2 cut(s) 254, 728
SacII CCGCGG 1 cut(s) 807
SalI GTCGAC 1 cut(s) 325
SapI GCTCTTC 1 cut(s) 577
SatI GCNGC 5 cut(s) 76, 79, 266, 807, 848
Sau3AI GATC 4 cut(s) 175, 193, 233, 370
Sau96I GGNCC 8 cut(s) 227, 228, 457, 781, 819, 836, 837, 873
ScrFI CCNGG 4 cut(s) 221, 817, 871, 928
SduI GDGCHC 5 cut(s) 231, 495, 700, 761, 840
SfaNI GCATC 3 cut(s) 87, 258, 859
Sfr274I CTCGAG 2 cut(s) 380, 396
Sfr303I CCGCGG 1 cut(s) 807
SgrBI CCGCGG 1 cut(s) 807
SinI GGWCC 2 cut(s) 457, 781
SlaI CTCGAG 2 cut(s) 380, 396
SmiMI CAYNNNNRTG 2 cut(s) 254, 728
SmlI CTYRAG 2 cut(s) 380, 396
SmoI CTYRAG 2 cut(s) 380, 396
Sse9I AATT 2 cut(s) 43, 518
SseBI AGGCCT 1 cut(s) 402
SspMI CTAG 1 cut(s) 552
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 4 cut(s) 219, 815, 869, 926
TaaI ACNGT 4 cut(s) 322, 331, 620, 889
TaiI ACGT 1 cut(s) 258
TaqI TCGA 7 cut(s) 252, 326, 375, 381, 397, 474, 912
TaqII GACCGA 1 cut(s) 537
TasI AATT 2 cut(s) 43, 518
TauI GCSGC 3 cut(s) 81, 809, 850
TfiI GAWTC 2 cut(s) 91, 646
TscAI CASTG 1 cut(s) 705
TseI GCWGC 2 cut(s) 75, 265
TspGWI ACGGA 2 cut(s) 668, 843
TspRI CASTG 1 cut(s) 705
VpaK11BI GGWCC 2 cut(s) 457, 781
XapI RAATTY 1 cut(s) 43
XbaI TCTAGA 1 cut(s) 551
XceI RCATGY 1 cut(s) 727
XhoI CTCGAG 2 cut(s) 380, 396
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.