pycom06g04690

Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
6126303 .. 6130959
4657 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1467 bp
ATGTACACTGTCATCATAGAAAATTTGTTGAGACGGGCATCCAAAGATAGAAAACCCCAAAACCCTGTCCCTGTCATCGTCACCGTCCCTGCAACTCTGAGGCTTAAGACTGTATCTGAATCAAATTTTACAGAGATGGAATTTAGGGTTTCACATGGAATCCCTATGTTCTCTGGCTCCTCACACCTCGCTTACCTCCATAACCAGCGTCGCTGCTTCTCTTCCCTCCTCAAGAAACTCCATAAAACCACTCAAGCTCGCGCGTTTGCCAATGGCGGAGGCGGCGGTTCTAAAGGTGATTCTTTTTTGTTGCCTGGTGCAACGGTGGCTACATTACTTATGCTCGGTGTTCTACATGGTCGTCGGATGTATGAAGACCGGAAGGCCGAGGAGGCACGAGAGAATGGAGCTGAACTTGAGTTTCAACCAGATGTAAAATCTAAATTTTTAAGGTTGCTGCCTCTGCGCTCCATTTCCAGATGTTGGGGATTATTGACAAGTGTGGAAATTCCAGTCTCTCTCCGCCCGCATGTTTATGGAGCGTGGGCTCGGGCATTCCATTCAAACTTGGAAGAAGCAGCTCTGCCACTGGATGAATACGCATCTTTAAGAGAGTTCTTTGTTCGAACCTTGAAAGAAGGTTCCAGGCCTATTGACCCCGACCCACGATGTCTGGTTAGTCCTGTGGATGGTACAGTGTTAAGATTTGGGGAGCTTAGAGAAGCAGGAGCTATGATTGAACAAGTAAAAGGTTTTTCTTATTCTGTTTTTTCTCTGCTCGGTGCAAACTCATTTCTTCCTATGATAGCTAAAGGAGATATGCATGAGGAGAGTAGTGAATCAGAAAATACTTCCAGGGAGAAGAATAAAAAGTCATGGTTGAGAGTTTCATTGGCTTCCCCTAAAGTTTGGGACCCTGTGTCAGAATGTCCTATGAATGGCCTATTTTACTGTGTAATTTACTTGAACCCTGGAGACTATCATCGTATTCATGCACCCGCTGATTGGAATGTTCTTGTCCGCCGTCACTTTTCGGGTCGTCTATTTCCTGTAAATGAACGTGCTACAAGAACAATCAGAAACCTTTATGTTGAAAATGAACGGGTTGTTCTCGAAGGTCTATGGAAAGAAGGATTTATGGCACTTGCTGCCATTGGAGCAACAAATATTGGTTCGATTGAGCTTTCCATTGAACCAGAACTTCAGACAAACCAGGCCAGAAAGAAGTTACTGCCCTCAGGGCCTCCAGAAGAACAGTTATACGAGCGTGATGGTATTGGTAGGATGCTCAAGAAAGGGGATGAGGTAGCCGCATTCAACATGGGATCAACTGTGGTGCTTGTCTTCCAGGCCCCCATATCACTCTCACAAGAAAAAGGGGATTCCTCGTCAGAGTTCAAGTTTTCGGTGCAACGTGGGGATAGAGTCCGCGTCGGAGAAGCATTAGGGAGGTGGTTTGATCAGTAA

Protein Analysis

489

Amino Acids

54.71

Weight (kDa)

9.03

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PS_Dcarbxylase PF02666 204 - 483 2.6e-51 Phosphatidylserine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013544)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 483
AccII CGCG 3 cut(s) 261, 263, 1431
AciI CCGC 9 cut(s) 276, 282, 285, 523, 527, 999, 1021, 1311, 1429
AclWI GGATC 1 cut(s) 1333
AcsI RAATTY 5 cut(s) 22, 124, 140, 443, 507
AcuI CTGAAG 1 cut(s) 1187
AfaI GTAC 2 cut(s) 5, 694
AfiI CCNNNNNNNGG 4 cut(s) 483, 689, 938, 1005
AflII CTTAAG 1 cut(s) 104
AgsI TTSAA 9 cut(s) 425, 564, 634, 740, 967, 1094, 1193, 1318, 1399
AhdI GACNNNNNGTC 1 cut(s) 919
AjnI CCWGG 6 cut(s) 313, 644, 854, 970, 1212, 1347
AluBI AGCT 7 cut(s) 257, 410, 581, 715, 731, 809, 1183
AluI AGCT 7 cut(s) 257, 410, 581, 715, 731, 809, 1183
Alw26I GTCTC 3 cut(s) 25, 520, 969
AlwI GGATC 1 cut(s) 1333
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 6 cut(s) 384, 647, 940, 1215, 1241, 1350
ApeKI GCWGC 4 cut(s) 213, 457, 578, 1148
ApoI RAATTY 5 cut(s) 22, 124, 140, 443, 507
AspLEI GCGC 2 cut(s) 263, 468
AspS9I GGNCC 3 cut(s) 913, 1241, 1351
AsuHPI GGTGA 2 cut(s) 73, 308
AsuII TTCGAA 1 cut(s) 625
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 1 cut(s) 913
AxyI CCTNAGG 1 cut(s) 1237
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 2 cut(s) 381, 1336
BbvI GCAGC 4 cut(s) 200, 444, 590, 1135
BccI CCATC 3 cut(s) 130, 683, 1265
BceAI ACGGC 1 cut(s) 1008
BciT130I CCWGG 6 cut(s) 315, 646, 856, 972, 1214, 1349
BclI TGATCA 1 cut(s) 1459
BcoDI GTCTC 3 cut(s) 25, 520, 969
BfrI CTTAAG 1 cut(s) 104
BglI GCCNNNNNGGC 2 cut(s) 392, 1240
BisI GCNGC 6 cut(s) 214, 283, 458, 579, 1149, 1311
BlsI GCNGC 6 cut(s) 215, 284, 459, 580, 1150, 1312
Bme1390I CCNGG 6 cut(s) 315, 646, 856, 972, 1214, 1349
Bme18I GGWCC 1 cut(s) 913
BmeRI GACNNNNNGTC 1 cut(s) 919
BmeT110I CYCGRG 1 cut(s) 549
BmgT120I GGNCC 3 cut(s) 913, 1241, 1351
BmiI GGNNCC 5 cut(s) 178, 643, 914, 915, 1353
BmrFI CCNGG 6 cut(s) 315, 646, 856, 972, 1214, 1349
BmsI GCATC 3 cut(s) 47, 611, 1275
BpiI GAAGAC 2 cut(s) 381, 1336
BpmI CTGGAG 2 cut(s) 993, 1230
Bpu14I TTCGAA 1 cut(s) 625
BpuEI CTTGAG 4 cut(s) 215, 237, 437, 1274
BsaJI CCNNGG 3 cut(s) 387, 855, 970
BsaWI WCCGGW 1 cut(s) 378
Bsc4I CCNNNNNNNGG 4 cut(s) 483, 689, 938, 1005
Bse1I ACTGG 2 cut(s) 512, 594
Bse21I CCTNAGG 1 cut(s) 1237
BseBI CCWGG 6 cut(s) 315, 646, 856, 972, 1214, 1349
BseDI CCNNGG 3 cut(s) 387, 855, 970
BseGI GGATG 6 cut(s) 38, 372, 598, 694, 1290, 1306
BseLI CCNNNNNNNGG 4 cut(s) 483, 689, 938, 1005
BseMII CTCAG 2 cut(s) 89, 1251
BseNI ACTGG 2 cut(s) 512, 594
BseRI GAGGAG 4 cut(s) 169, 218, 404, 842
BseXI GCAGC 4 cut(s) 200, 444, 590, 1135
Bsh1236I CGCG 3 cut(s) 261, 263, 1431
BshFI GGCC 6 cut(s) 386, 649, 942, 1217, 1243, 1352
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 1 cut(s) 379
BslFI GGGAC 3 cut(s) 53, 71, 926
BslI CCNNNNNNNGG 4 cut(s) 483, 689, 938, 1005
BsmAI GTCTC 3 cut(s) 25, 520, 969
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 3 cut(s) 53, 71, 926
BsmI GAATGC 2 cut(s) 554, 1313
BsnI GGCC 6 cut(s) 386, 649, 942, 1217, 1243, 1352
BsoBI CYCGRG 1 cut(s) 549
Bsp119I TTCGAA 1 cut(s) 625
Bsp1286I GDGCHC 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 1325, 1459
BspACI CCGC 9 cut(s) 276, 282, 285, 523, 527, 999, 1021, 1311, 1429
BspANI GGCC 6 cut(s) 386, 649, 942, 1217, 1243, 1352
BspCNI CTCAG 2 cut(s) 90, 1250
BspFNI CGCG 3 cut(s) 261, 263, 1431
BspLI GGNNCC 5 cut(s) 178, 643, 914, 915, 1353
BspPI GGATC 1 cut(s) 1333
BspT104I TTCGAA 1 cut(s) 625
BspTI CTTAAG 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 512, 594
BssECI CCNNGG 3 cut(s) 387, 855, 970
BssMI GATC 2 cut(s) 1325, 1459
BssSI CACGAG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 6 cut(s) 315, 646, 856, 972, 1214, 1349
Bst4CI ACNGT 8 cut(s) 10, 85, 112, 325, 697, 953, 1257, 1333
Bst6I CTCTTC 1 cut(s) 226
BstAFI CTTAAG 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 2 cut(s) 259, 527
BstDEI CTNAG 3 cut(s) 98, 716, 1237
BstF5I GGATG 6 cut(s) 38, 372, 598, 694, 1290, 1306
BstFNI CGCG 3 cut(s) 261, 263, 1431
BstHHI GCGC 2 cut(s) 263, 468
BstKTI GATC 2 cut(s) 1328, 1462
BstMAI GTCTC 3 cut(s) 25, 520, 969
BstMBI GATC 2 cut(s) 1325, 1459
BstMWI GCNNNNNNNGC 7 cut(s) 282, 326, 392, 463, 1148, 1157, 1240
BstNI CCWGG 6 cut(s) 315, 646, 856, 972, 1214, 1349
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 6 cut(s) 313, 644, 854, 970, 1212, 1347
BstUI CGCG 3 cut(s) 261, 263, 1431
BstV1I GCAGC 4 cut(s) 200, 444, 590, 1135
BstV2I GAAGAC 2 cut(s) 381, 1336
Bsu36I CCTNAGG 1 cut(s) 1237
BsuRI GGCC 6 cut(s) 386, 649, 942, 1217, 1243, 1352
BtsCI GGATG 6 cut(s) 38, 372, 598, 694, 1290, 1306
BtsIMutI CAGTG 3 cut(s) 6, 587, 702
Cac8I GCNNGC 2 cut(s) 259, 527
CfoI GCGC 2 cut(s) 263, 468
Cfr13I GGNCC 3 cut(s) 913, 1241, 1351
CseI GACGC 2 cut(s) 197, 1420
Csp6I GTAC 2 cut(s) 4, 693
CviAII CATG 7 cut(s) 155, 356, 530, 824, 876, 992, 1321
CviQI GTAC 2 cut(s) 4, 693
DdeI CTNAG 3 cut(s) 98, 716, 1237
DpnI GATC 2 cut(s) 1327, 1461
DpnII GATC 2 cut(s) 1325, 1459
DriI GACNNNNNGTC 1 cut(s) 919
Eam1104I CTCTTC 1 cut(s) 226
Eam1105I GACNNNNNGTC 1 cut(s) 919
EarI CTCTTC 1 cut(s) 226
EciI GGCGGA 3 cut(s) 291, 512, 1010
Eco147I AGGCCT 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 913
Eco57I CTGAAG 1 cut(s) 1187
Eco81I CCTNAGG 1 cut(s) 1237
Eco88I CYCGRG 1 cut(s) 549
EcoO109I RGGNCCY 3 cut(s) 913, 1241, 1351
EcoRII CCWGG 6 cut(s) 313, 644, 854, 970, 1212, 1347
EcoT22I ATGCAT 1 cut(s) 825
EcoT38I GRGCYC 1 cut(s) 550
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 7 cut(s) 158, 359, 533, 827, 879, 995, 1324
FaqI GGGAC 3 cut(s) 53, 71, 926
FatI CATG 7 cut(s) 154, 355, 529, 823, 875, 991, 1320
FauI CCCGC 2 cut(s) 534, 1006
FbaI TGATCA 1 cut(s) 1459
Fnu4HI GCNGC 6 cut(s) 214, 283, 458, 579, 1149, 1311
FokI GGATG 6 cut(s) 25, 379, 605, 701, 1297, 1313
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 6 cut(s) 214, 283, 458, 579, 1149, 1311
GlaI GCGC 2 cut(s) 262, 467
GluI GCNGC 6 cut(s) 214, 283, 458, 579, 1149, 1311
GsuI CTGGAG 2 cut(s) 993, 1230
HaeIII GGCC 6 cut(s) 386, 649, 942, 1217, 1243, 1352
HapII CCGG 1 cut(s) 379
HgaI GACGC 2 cut(s) 197, 1420
HhaI GCGC 2 cut(s) 263, 468
Hin1II CATG 7 cut(s) 158, 359, 533, 827, 879, 995, 1324
Hin6I GCGC 2 cut(s) 261, 466
HinP1I GCGC 2 cut(s) 261, 466
HinfI GANTC 6 cut(s) 119, 159, 299, 839, 1382, 1425
HpaII CCGG 1 cut(s) 379
HphI GGTGA 2 cut(s) 73, 308
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 9 cut(s) 99, 118, 366, 844, 925, 1079, 1206, 1393, 1436
Hpy188III TCNNGA 5 cut(s) 232, 477, 1112, 1247, 1291
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 213, 366, 1436
HpyAV CCTTC 4 cut(s) 376, 632, 1109, 1124
HpyCH4III ACNGT 8 cut(s) 10, 85, 112, 325, 697, 953, 1257, 1333
HpyCH4IV ACGT 2 cut(s) 1060, 1414
HpyCH4V TGCA 6 cut(s) 92, 320, 785, 823, 995, 1411
HpyF10VI GCNNNNNNNGC 7 cut(s) 282, 326, 392, 463, 1148, 1157, 1240
HpyF3I CTNAG 3 cut(s) 98, 716, 1237
HpySE526I ACGT 2 cut(s) 1060, 1414
Hsp92II CATG 7 cut(s) 158, 359, 533, 827, 879, 995, 1324
HspAI GCGC 2 cut(s) 261, 466
KflI GGGWCCC 1 cut(s) 913
Ksp22I TGATCA 1 cut(s) 1459
Kzo9I GATC 2 cut(s) 1325, 1459
LmnI GCTCC 7 cut(s) 182, 407, 473, 539, 712, 728, 1157
Lsp1109I GCAGC 4 cut(s) 200, 444, 590, 1135
LweI GCATC 3 cut(s) 47, 611, 1275
MaeII ACGT 2 cut(s) 1060, 1414
MaeIII GTNAC 3 cut(s) 79, 1025, 1227
MalI GATC 2 cut(s) 1327, 1461
MboI GATC 2 cut(s) 1325, 1459
MboII GAAGA 7 cut(s) 213, 386, 584, 788, 874, 1262, 1336
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 6 cut(s) 22, 124, 140, 443, 507, 957
MlyI GAGTC 1 cut(s) 1434
MmeI TCCRAC 2 cut(s) 344, 1414
Mph1103I ATGCAT 1 cut(s) 825
MseI TTAA 4 cut(s) 105, 449, 608, 701
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 1001
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 1 cut(s) 379
MspR9I CCNGG 6 cut(s) 315, 646, 856, 972, 1214, 1349
Mva1269I GAATGC 2 cut(s) 554, 1313
MvaI CCWGG 6 cut(s) 315, 646, 856, 972, 1214, 1349
MvnI CGCG 3 cut(s) 261, 263, 1431
MwoI GCNNNNNNNGC 7 cut(s) 282, 326, 392, 463, 1148, 1157, 1240
NdeII GATC 2 cut(s) 1325, 1459
NlaIII CATG 7 cut(s) 158, 359, 533, 827, 879, 995, 1324
NlaIV GGNNCC 5 cut(s) 178, 643, 914, 915, 1353
NmeAIII GCCGAG 1 cut(s) 412
NmuCI GTSAC 2 cut(s) 79, 1025
NsiI ATGCAT 1 cut(s) 825
NspI RCATGY 1 cut(s) 533
NspV TTCGAA 1 cut(s) 625
PceI AGGCCT 1 cut(s) 649
PctI GAATGC 2 cut(s) 554, 1313
PfeI GAWTC 5 cut(s) 119, 159, 299, 839, 1382
PflMI CCANNNNNTGG 1 cut(s) 483
PkrI GCNGC 6 cut(s) 215, 284, 459, 580, 1150, 1312
PleI GAGTC 1 cut(s) 1433
PpsI GAGTC 1 cut(s) 1433
PpuMI RGGWCCY 1 cut(s) 913
Psp5II RGGWCCY 1 cut(s) 913
Psp6I CCWGG 6 cut(s) 313, 644, 854, 970, 1212, 1347
PspGI CCWGG 6 cut(s) 313, 644, 854, 970, 1212, 1347
PspN4I GGNNCC 5 cut(s) 178, 643, 914, 915, 1353
PspPI GGNCC 3 cut(s) 913, 1241, 1351
PspPPI RGGWCCY 1 cut(s) 913
RsaI GTAC 2 cut(s) 5, 694
RsaNI GTAC 2 cut(s) 4, 693
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 4 cut(s) 105, 449, 608, 701
SatI GCNGC 6 cut(s) 214, 283, 458, 579, 1149, 1311
Sau3AI GATC 2 cut(s) 1325, 1459
Sau96I GGNCC 3 cut(s) 913, 1241, 1351
SchI GAGTC 1 cut(s) 1434
ScrFI CCNGG 6 cut(s) 315, 646, 856, 972, 1214, 1349
SduI GDGCHC 1 cut(s) 550
SfaNI GCATC 3 cut(s) 47, 611, 1275
SfuI TTCGAA 1 cut(s) 625
SinI GGWCC 1 cut(s) 913
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 5 cut(s) 104, 230, 252, 416, 1289
SmoI CTYRAG 5 cut(s) 104, 230, 252, 416, 1289
Sse9I AATT 6 cut(s) 22, 124, 140, 443, 507, 957
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 9 cut(s) 276, 282, 285, 523, 527, 999, 1021, 1311, 1429
SspI AATATT 1 cut(s) 1168
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 6 cut(s) 313, 644, 854, 970, 1212, 1347
TaaI ACNGT 8 cut(s) 10, 85, 112, 325, 697, 953, 1257, 1333
TaiI ACGT 2 cut(s) 1063, 1417
TaqI TCGA 3 cut(s) 625, 1113, 1175
TasI AATT 6 cut(s) 22, 124, 140, 443, 507, 957
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 285, 1313
TfiI GAWTC 5 cut(s) 119, 159, 299, 839, 1382
Tru1I TTAA 4 cut(s) 105, 449, 608, 701
Tru9I TTAA 4 cut(s) 105, 449, 608, 701
TscAI CASTG 3 cut(s) 13, 594, 702
TseFI GTSAC 2 cut(s) 79, 1025
TseI GCWGC 4 cut(s) 213, 457, 578, 1148
Tsp45I GTSAC 2 cut(s) 79, 1025
TspDTI ATGAA 7 cut(s) 387, 609, 879, 950, 980, 1071, 1113
TspRI CASTG 3 cut(s) 13, 594, 702
Van91I CCANNNNNTGG 1 cut(s) 483
Vha464I CTTAAG 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 913
XapI RAATTY 5 cut(s) 22, 124, 140, 443, 507
XceI RCATGY 1 cut(s) 533
Zsp2I ATGCAT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.