pycom06g04740

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011081
Physical Location & Seq
Reverse (-)
6298476 .. 6300527
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1176 bp
ATGGAAAGTGGTTATTTTTCAGCTTGGAAGAGTAACACCGATTCTATGCATGGCTTGTTGAATGTGGAAGAAGCCGAAGAGCTGAAAATGGCGGCACCATTGCCTGCGATCCCCCAGCCACAAACCCCACAGGAGCCTATGGAGTTCTTGTCCAGATCATGGAGTCTTTCAGCTTCCGAAATTTCAAAGGCTCTTGCTCAAAAGCAAAAACAATTTTCCGTCGAAAAAAGTCCCGAAACATTCCCAGAAGCAACTGTTGTGCCACAGCTAACAAGCAAGATCATAAAATCTGTCAACAATCGGAGAACGGGGTCCGTCGGAAAATGGTTCCACCATACGGAGTTGAGTAGTAGTGCAGTGAAGAAGAAAGACAAGGAACGGGTAGAAAGGGCGCGAGTGCATTCTGCAGTCTCCATTGCAGGTGTTGCTGCAGCCTTGGCTGCTGTAACTGCAGCAGAGAACTCGAATGGTTCTGGCTCGAAAACCACCATGGCTTTGGCTTTGGCTACAGAGTTGCTGGCATCACATTGCATCGAAATGGCTGAGTTAGCCGGCGCTGATCATGATCGTGTGGCATCTGCTGTCAGATCAGCAGTGGACATCCGGAGTCCCGGTGATCTTATGACTCTTACAGCAGCGGCTGCTACAGCTTTGCGAGGAGAATCCGCTTTGAAAACAAGACTACCAAAAGAAGCAAGAAAGAATGCTGCAATTAGTCCCTATGATAAAGGAATGGGTGAAAGTCCTTCGGTTGGTGCTTTTTATAGTAAAGTGGAAGAGCAGCAAGATCCTCCCTGTGTTGGAGAGCTACTGCAACTTACAGGAAAAGGTGTTTTACAATGGAAGCATGTCTCTGTGTACATCAACAATAAATCTCAGGTCGTAGTTAAACTCAAACGTAAGCACGTTGGAGGAGCCTTCTCCAAGAGGAAGAAATGTGTTGTTTATGGAGTCTGTGATGAGACTTCTGCCTGGCCATACAAAAAAGAAAGGGGAATTTCAGAGGAGGTCTATTTCGGGCTCAAAACCGGACAGGGTCTACTGGAATTCAAGTGCAAGAACAAGGTCCATAAGCAAAAATGGGTTGATGGGATCAAAAGCCTTGTTCGCCGAGTCAGCTACATTGATGAAGCTGAGCACTCTTTGGGATTTTTAAGTATAAGTAATAGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

392

Amino Acids

42.53

Weight (kDa)

9.31

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 40 - 83 1.4e-11 Auxin canalisation
Auxin_canalis PF05703 94 - 244 3.6e-49 Auxin canalisation
PH_2 PF08458 269 - 371 3.6e-38 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17350 AT5G47440
fragaria_vesca FvH4_5g19120 FvH4_5g19120
malus_domestica MD06G1056800.v1.1
prunus_persica Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1 Prupe.5G067500_v2.0.a1
pyrus_communis pycom06g04740
rosa_chinensis RchiOBHm_Chr7g0203601
rosa_laevigata RLG00000003515
rosa_multiflora Rmu_sc0010675.1_g000003
rosa_roxburghii Rroxscaffold_3G00253650
rosa_rugosa Rorug07G0077200 Rorug07G0077300
rosa_samantha Rh7AG207000 Rh7BG206500 Rh7CG219600 Rh7DG214200
rosa_wichuraiana Rw7G018060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 410
AccB1I GGYRCC 1 cut(s) 94
AccB7I CCANNNNNTGG 1 cut(s) 159
AccI GTMKAC 1 cut(s) 1039
AccII CGCG 1 cut(s) 394
AccIII TCCGGA 1 cut(s) 603
AciI CCGC 3 cut(s) 92, 638, 666
AclWI GGATC 3 cut(s) 103, 782, 1100
AcoI YGGCCR 1 cut(s) 974
AcsI RAATTY 3 cut(s) 180, 996, 1046
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 4 cut(s) 159, 337, 752, 800
AgsI TTSAA 4 cut(s) 61, 186, 673, 1051
AjnI CCWGG 1 cut(s) 971
AluBI AGCT 8 cut(s) 23, 82, 173, 268, 650, 808, 1119, 1133
AluI AGCT 8 cut(s) 23, 82, 173, 268, 650, 808, 1119, 1133
Alw21I GWGCWC 1 cut(s) 1140
Alw26I GTCTC 3 cut(s) 415, 856, 956
AlwI GGATC 3 cut(s) 103, 782, 1100
AlwNI CAGNNNCTG 1 cut(s) 641
Aor13HI TCCGGA 1 cut(s) 603
AoxI GGCC 1 cut(s) 974
ApeKI GCWGC 8 cut(s) 428, 431, 440, 452, 635, 641, 707, 781
ApoI RAATTY 3 cut(s) 180, 996, 1046
AspLEI GCGC 2 cut(s) 394, 557
AspS9I GGNCC 2 cut(s) 312, 1066
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 2 cut(s) 626, 749
AvaII GGWCC 2 cut(s) 312, 1066
BalI TGGCCA 1 cut(s) 976
BanI GGYRCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 1023
Bbv12I GWGCWC 1 cut(s) 1140
BbvI GCAGC 8 cut(s) 415, 427, 443, 464, 628, 647, 694, 793
BccI CCATC 1 cut(s) 1082
BcgI CGANNNNNNTGC 2 cut(s) 444, 478
BciT130I CCWGG 1 cut(s) 973
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 3 cut(s) 415, 856, 956
BfmI CTRYAG 5 cut(s) 405, 429, 450, 507, 645
BfoI RGCGCY 1 cut(s) 558
BfuAI ACCTGC 1 cut(s) 410
BlpI GCTNAGC 1 cut(s) 1134
Bme1390I CCNGG 2 cut(s) 612, 973
Bme18I GGWCC 2 cut(s) 312, 1066
BmgT120I GGNCC 2 cut(s) 312, 1066
BmiI GGNNCC 5 cut(s) 96, 135, 313, 329, 916
BmrFI CCNGG 2 cut(s) 612, 973
BmsI GCATC 3 cut(s) 530, 540, 584
Bpu1102I GCTNAGC 1 cut(s) 1134
BpuMI CCSGG 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 435, 489
BsaWI WCCGGW 2 cut(s) 603, 1028
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 598, 628
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 337, 752, 800
Bse118I RCCGGY 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 1047
Bse3DI GCAATG 3 cut(s) 98, 414, 526
Bse8I GATNNNNATC 1 cut(s) 564
BseAI TCCGGA 1 cut(s) 603
BseBI CCWGG 1 cut(s) 973
BseDI CCNNGG 2 cut(s) 435, 489
BseGI GGATG 1 cut(s) 600
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 4 cut(s) 159, 337, 752, 800
BseMI GCAATG 3 cut(s) 98, 414, 526
BseMII CTCAG 3 cut(s) 534, 890, 1125
BseNI ACTGG 1 cut(s) 1047
BseRI GAGGAG 3 cut(s) 672, 927, 1019
BseXI GCAGC 8 cut(s) 415, 427, 443, 464, 628, 647, 694, 793
BseYI CCCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 394
BshFI GGCC 1 cut(s) 976
BshNI GGYRCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 1140
BsiSI CCGG 4 cut(s) 552, 604, 612, 1029
BslFI GGGAC 3 cut(s) 216, 594, 702
BslI CCNNNNNNNGG 4 cut(s) 159, 337, 752, 800
BsmAI GTCTC 3 cut(s) 415, 856, 956
BsmFI GGGAC 3 cut(s) 216, 594, 702
BsmI GAATGC 2 cut(s) 400, 709
BsnI GGCC 1 cut(s) 976
Bsp1286I GDGCHC 2 cut(s) 1023, 1140
Bsp13I TCCGGA 1 cut(s) 603
Bsp1407I TGTACA 1 cut(s) 858
Bsp143I GATC 9 cut(s) 108, 155, 279, 559, 565, 587, 616, 787, 1092
Bsp1720I GCTNAGC 1 cut(s) 1134
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 3 cut(s) 92, 638, 666
BspANI GGCC 1 cut(s) 976
BspCNI CTCAG 3 cut(s) 535, 889, 1126
BspEI TCCGGA 1 cut(s) 603
BspFNI CGCG 1 cut(s) 394
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 5 cut(s) 96, 135, 313, 329, 916
BspMAI CTGCAG 3 cut(s) 409, 433, 454
BspMI ACCTGC 1 cut(s) 410
BspPI GGATC 3 cut(s) 103, 782, 1100
BspQI GCTCTTC 2 cut(s) 72, 771
BspT107I GGYRCC 1 cut(s) 94
BsrDI GCAATG 3 cut(s) 98, 414, 526
BsrFI RCCGGY 1 cut(s) 551
BsrGI TGTACA 1 cut(s) 858
BsrI ACTGG 1 cut(s) 1047
BssAI RCCGGY 1 cut(s) 551
BssECI CCNNGG 2 cut(s) 435, 489
BssMI GATC 9 cut(s) 108, 155, 279, 559, 565, 587, 616, 787, 1092
BssT1I CCWWGG 2 cut(s) 435, 489
Bst2UI CCWGG 1 cut(s) 973
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 3 cut(s) 23, 72, 771
BstAPI GCANNNNNTGC 2 cut(s) 425, 641
BstAUI TGTACA 1 cut(s) 858
BstC8I GCNNGC 3 cut(s) 105, 519, 553
BstDEI CTNAG 3 cut(s) 543, 876, 1134
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 600
BstFNI CGCG 1 cut(s) 394
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 2 cut(s) 394, 557
BstKTI GATC 9 cut(s) 111, 158, 282, 562, 568, 590, 619, 790, 1095
BstMAI GTCTC 3 cut(s) 415, 856, 956
BstMBI GATC 9 cut(s) 108, 155, 279, 559, 565, 587, 616, 787, 1092
BstMWI GCNNNNNNNGC 9 cut(s) 425, 437, 440, 449, 548, 641, 647, 1107, 1116
BstNI CCWGG 1 cut(s) 973
BstNSI RCATGY 1 cut(s) 851
BstSCI CCNGG 2 cut(s) 610, 971
BstSFI CTRYAG 5 cut(s) 405, 429, 450, 507, 645
BstUI CGCG 1 cut(s) 394
BstV1I GCAGC 8 cut(s) 415, 427, 443, 464, 628, 647, 694, 793
BstX2I RGATCY 1 cut(s) 787
BstXI CCANNNNNNTGG 1 cut(s) 496
BstYI RGATCY 1 cut(s) 787
BsuRI GGCC 1 cut(s) 976
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 1 cut(s) 600
BtsI GCAGTG 2 cut(s) 363, 600
BtsIMutI CAGTG 2 cut(s) 363, 600
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 3 cut(s) 105, 519, 553
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 1 cut(s) 562
CfoI GCGC 2 cut(s) 394, 557
Cfr10I RCCGGY 1 cut(s) 551
Cfr13I GGNCC 2 cut(s) 312, 1066
Csp6I GTAC 1 cut(s) 859
CviAII CATG 5 cut(s) 50, 159, 490, 563, 848
CviQI GTAC 1 cut(s) 859
DdeI CTNAG 3 cut(s) 543, 876, 1134
DpnI GATC 9 cut(s) 110, 157, 281, 561, 567, 589, 618, 789, 1094
DpnII GATC 9 cut(s) 108, 155, 279, 559, 565, 587, 616, 787, 1092
EaeI YGGCCR 1 cut(s) 974
Eam1104I CTCTTC 3 cut(s) 23, 72, 771
EarI CTCTTC 3 cut(s) 23, 72, 771
Eco130I CCWWGG 2 cut(s) 435, 489
Eco24I GRGCYC 1 cut(s) 1023
Eco47I GGWCC 2 cut(s) 312, 1066
EcoRI GAATTC 1 cut(s) 1046
EcoRII CCWGG 1 cut(s) 971
EcoT14I CCWWGG 2 cut(s) 435, 489
EcoT22I ATGCAT 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 2 cut(s) 435, 489
FaeI CATG 5 cut(s) 53, 162, 493, 566, 851
FaqI GGGAC 3 cut(s) 216, 594, 702
FatI CATG 5 cut(s) 49, 158, 489, 562, 847
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 1039
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 1 cut(s) 1023
GlaI GCGC 2 cut(s) 393, 556
GsaI CCCAGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 1 cut(s) 976
HapII CCGG 4 cut(s) 552, 604, 612, 1029
HhaI GCGC 2 cut(s) 394, 557
Hin1II CATG 5 cut(s) 53, 162, 493, 566, 851
Hin6I GCGC 2 cut(s) 392, 555
HinP1I GCGC 2 cut(s) 392, 555
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 7 cut(s) 41, 163, 607, 625, 662, 951, 1113
HpaII CCGG 4 cut(s) 552, 604, 612, 1029
HphI GGTGA 2 cut(s) 626, 749
Hpy166II GTNNAC 4 cut(s) 295, 598, 859, 1040
Hpy188I TCNGA 5 cut(s) 178, 303, 320, 587, 1003
Hpy188III TCNNGA 4 cut(s) 153, 233, 563, 604
Hpy8I GTNNAC 4 cut(s) 295, 598, 859, 1040
Hpy99I CGWCG 2 cut(s) 224, 320
HpyAV CCTTC 2 cut(s) 756, 928
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 2 cut(s) 898, 906
HpyF10VI GCNNNNNNNGC 9 cut(s) 425, 437, 440, 449, 548, 641, 647, 1107, 1116
HpyF3I CTNAG 3 cut(s) 543, 876, 1134
HpySE526I ACGT 2 cut(s) 898, 906
Hsp92II CATG 5 cut(s) 53, 162, 493, 566, 851
HspAI GCGC 2 cut(s) 392, 555
Kpn2I TCCGGA 1 cut(s) 603
KroI GCCGGC 1 cut(s) 551
KroNI GCCGGC 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 9 cut(s) 108, 155, 279, 559, 565, 587, 616, 787, 1092
LguI GCTCTTC 2 cut(s) 72, 771
LmnI GCTCC 2 cut(s) 133, 914
Lsp1109I GCAGC 8 cut(s) 415, 427, 443, 464, 628, 647, 694, 793
LweI GCATC 3 cut(s) 530, 540, 584
MaeII ACGT 2 cut(s) 898, 906
MaeIII GTNAC 2 cut(s) 32, 445
MalI GATC 9 cut(s) 110, 157, 281, 561, 567, 589, 618, 789, 1094
MboI GATC 9 cut(s) 108, 155, 279, 559, 565, 587, 616, 787, 1092
MboII GAAGA 7 cut(s) 40, 80, 89, 373, 376, 788, 943
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 2 cut(s) 1023, 1140
MlsI TGGCCA 1 cut(s) 976
MluCI AATT 5 cut(s) 180, 212, 711, 996, 1046
MluNI TGGCCA 1 cut(s) 976
MlyI GAGTC 5 cut(s) 172, 616, 619, 960, 1122
MmeI TCCRAC 3 cut(s) 298, 781, 889
MnlI CCTC 6 cut(s) 650, 801, 905, 921, 997, 1000
Mox20I TGGCCA 1 cut(s) 976
Mph1103I ATGCAT 1 cut(s) 51
MroI TCCGGA 1 cut(s) 603
MroNI GCCGGC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 976
MseI TTAA 2 cut(s) 888, 1154
MslI CAYNNNNRTG 2 cut(s) 536, 567
Msp20I TGGCCA 1 cut(s) 976
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 4 cut(s) 552, 604, 612, 1029
MspR9I CCNGG 2 cut(s) 612, 973
Mva1269I GAATGC 2 cut(s) 400, 709
MvaI CCWGG 1 cut(s) 973
MvnI CGCG 1 cut(s) 394
MwoI GCNNNNNNNGC 9 cut(s) 425, 437, 440, 449, 548, 641, 647, 1107, 1116
NaeI GCCGGC 1 cut(s) 553
NciI CCSGG 1 cut(s) 612
NcoI CCATGG 1 cut(s) 489
NdeII GATC 9 cut(s) 108, 155, 279, 559, 565, 587, 616, 787, 1092
NgoMIV GCCGGC 1 cut(s) 551
NlaIII CATG 5 cut(s) 53, 162, 493, 566, 851
NlaIV GGNNCC 5 cut(s) 96, 135, 313, 329, 916
NmeAIII GCCGAG 1 cut(s) 1136
NsiI ATGCAT 1 cut(s) 51
NspI RCATGY 1 cut(s) 851
PagI TCATGA 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 410
PciSI GCTCTTC 2 cut(s) 72, 771
PctI GAATGC 2 cut(s) 400, 709
PdiI GCCGGC 1 cut(s) 553
PfeI GAWTC 2 cut(s) 41, 662
PflFI GACNNNGTC 1 cut(s) 1035
PflMI CCANNNNNTGG 1 cut(s) 159
PleI GAGTC 5 cut(s) 171, 615, 619, 959, 1121
PpsI GAGTC 5 cut(s) 171, 615, 619, 959, 1121
Psp6I CCWGG 1 cut(s) 971
PspFI CCCAGC 1 cut(s) 114
PspGI CCWGG 1 cut(s) 971
PspN4I GGNNCC 5 cut(s) 96, 135, 313, 329, 916
PspPI GGNCC 2 cut(s) 312, 1066
PstI CTGCAG 3 cut(s) 409, 433, 454
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 787
PsyI GACNNNGTC 1 cut(s) 1035
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
RseI CAYNNNNRTG 2 cut(s) 536, 567
SapI GCTCTTC 2 cut(s) 72, 771
SaqAI TTAA 2 cut(s) 888, 1154
Sau3AI GATC 9 cut(s) 108, 155, 279, 559, 565, 587, 616, 787, 1092
Sau96I GGNCC 2 cut(s) 312, 1066
SchI GAGTC 5 cut(s) 172, 616, 619, 960, 1122
ScrFI CCNGG 2 cut(s) 612, 973
SduI GDGCHC 2 cut(s) 1023, 1140
SfaNI GCATC 3 cut(s) 530, 540, 584
SfcI CTRYAG 5 cut(s) 405, 429, 450, 507, 645
SinI GGWCC 2 cut(s) 312, 1066
SmiMI CAYNNNNRTG 2 cut(s) 536, 567
Sse9I AATT 5 cut(s) 180, 212, 711, 996, 1046
SsiI CCGC 3 cut(s) 92, 638, 666
StyD4I CCNGG 2 cut(s) 610, 971
StyI CCWWGG 2 cut(s) 435, 489
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 2 cut(s) 901, 909
TaqI TCGA 4 cut(s) 222, 464, 479, 534
TasI AATT 5 cut(s) 180, 212, 711, 996, 1046
TatI WGTACW 1 cut(s) 858
TauI GCSGC 2 cut(s) 95, 641
TfiI GAWTC 2 cut(s) 41, 662
Tru1I TTAA 2 cut(s) 888, 1154
Tru9I TTAA 2 cut(s) 888, 1154
TscAI CASTG 2 cut(s) 363, 600
TseI GCWGC 8 cut(s) 428, 431, 440, 452, 635, 641, 707, 781
TspDTI ATGAA 1 cut(s) 1143
TspGWI ACGGA 3 cut(s) 208, 304, 353
TspRI CASTG 2 cut(s) 363, 600
Tth111I GACNNNGTC 1 cut(s) 1035
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 312, 1066
XapI RAATTY 3 cut(s) 180, 996, 1046
XceI RCATGY 1 cut(s) 851
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XmiI GTMKAC 1 cut(s) 1039
Zsp2I ATGCAT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.