pycom06g05070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005606
Physical Location & Seq
Forward (+)
6818093 .. 6818986
894 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 894 bp
ATGAAACTGTTAAAGAAATCAACACTTTCACAAGGATTCAAGGGAATTGCCAATTTTGACAGTGAACAAGTTCCCTCTCTAGACATGGAAGAACCACCAAATTGTTGGGCACTACCTGTCGTGACACTTACAAGTATTGCTTTTGCACTTTCAAACATCAGCAGTAGTTCAATTGAAGAGCTGACAAGTGGTGTTCACGAAGGGCTCATGTACATAAATTTTATTGAAAATTACCTGGATGGTAAAGAAGATGTCACCAATGTCAGAAAGGCAGCAATTACAGTGTGGCAAGGAGTTGATCTCTATCACAAATGGCTAGATGTGGATCTCCGCAAAATGTCACCTGAGGGGAAGAGCTCAAAGGAAATACTTGAAGGACTTGCTGAGACTGCAAAGTTTATATTTGAAGAGTCTAGAAAGAAGCATATGACTACGAATGCATGTTTAAGAGATAACCCTTCAAAATGGCCTGTTAGAGAACTGGCTGCTAATTCCATGTATAGGATAAGTCAAACTATTCTGATGAATTATGAAGGCAGCATCAACCAGACAGGTGAGAGATTATTCGAAGAGCTGAATGTCATGATTTCGGACATAATGGCTGCTTGTCTCACTAATTTACGTCTAGTTATAAAGAGGAAGTGTCTGAGCATCGGCATTGAAGAGAGGGAGGAGGGTGTGCGGCATGCAGTTTACATTCTTGGCAAAACTGAAAACATTTTGAATATTCTAGACCATAGAATTCCCCCAAGTATGGACCTGCACCAAATTTCATGCATTGATGAGTGGCGTTCGTTGCACAAGGACAGTCCCTTGTACTTCCCTTCTCCATCTCCATCAGAGGGTGACGAAGCCTCTTCTCTTTCAAGTGACTTCTACCTGGTGATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

33.56

Weight (kDa)

5.15

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
Acc36I ACCTGC 1 cut(s) 768
AciI CCGC 2 cut(s) 331, 682
AclWI GGATC 1 cut(s) 333
AcsI RAATTY 3 cut(s) 217, 741, 768
AfaI GTAC 2 cut(s) 212, 818
AfiI CCNNNNNNNGG 3 cut(s) 501, 754, 842
AjnI CCWGG 2 cut(s) 234, 879
AluBI AGCT 3 cut(s) 181, 357, 574
AluI AGCT 3 cut(s) 181, 357, 574
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 2 cut(s) 380, 614
AlwI GGATC 1 cut(s) 333
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 4 cut(s) 272, 485, 537, 602
ApoI RAATTY 3 cut(s) 217, 741, 768
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 757
AsuHPI GGTGA 4 cut(s) 247, 333, 566, 857
AsuII TTCGAA 1 cut(s) 567
AvaII GGWCC 1 cut(s) 757
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 112
BanII GRGCYC 2 cut(s) 207, 359
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 4 cut(s) 284, 472, 549, 589
BccI CCATC 3 cut(s) 233, 838, 844
BciT130I CCWGG 2 cut(s) 236, 881
BcoDI GTCTC 2 cut(s) 380, 614
BfaI CTAG 6 cut(s) 80, 317, 414, 626, 731, 892
BfuAI ACCTGC 1 cut(s) 768
BisI GCNGC 5 cut(s) 273, 486, 538, 603, 683
BlsI GCNGC 5 cut(s) 274, 487, 539, 604, 684
Bme1390I CCNGG 2 cut(s) 236, 881
Bme18I GGWCC 1 cut(s) 757
BmgT120I GGNCC 1 cut(s) 757
BmrFI CCNGG 2 cut(s) 236, 881
BmsI GCATC 2 cut(s) 549, 660
BplI GAGNNNNNCTC 2 cut(s) 285, 317
Bpu14I TTCGAA 1 cut(s) 567
BsaBI GATNNNNATC 2 cut(s) 303, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 501, 754, 842
Bse1I ACTGG 1 cut(s) 486
Bse21I CCTNAGG 1 cut(s) 345
Bse8I GATNNNNATC 2 cut(s) 303, 324
BseBI CCWGG 2 cut(s) 236, 881
BseGI GGATG 1 cut(s) 244
BseJI GATNNNNATC 2 cut(s) 303, 324
BseLI CCNNNNNNNGG 3 cut(s) 501, 754, 842
BseMII CTCAG 3 cut(s) 336, 375, 638
BseNI ACTGG 1 cut(s) 486
BseRI GAGGAG 1 cut(s) 686
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 4 cut(s) 284, 472, 549, 589
BsgI GTGCAG 1 cut(s) 746
BshFI GGCC 1 cut(s) 469
BsiHKAI GWGCWC 1 cut(s) 359
BslFI GGGAC 1 cut(s) 795
BslI CCNNNNNNNGG 3 cut(s) 501, 754, 842
BsmAI GTCTC 2 cut(s) 380, 614
BsmFI GGGAC 1 cut(s) 795
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 3 cut(s) 112, 207, 359
Bsp1407I TGTACA 1 cut(s) 210
Bsp143I GATC 2 cut(s) 298, 325
BspACI CCGC 2 cut(s) 331, 682
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 3 cut(s) 337, 376, 639
BspHI TCATGA 1 cut(s) 582
BspMI ACCTGC 1 cut(s) 768
BspPI GGATC 1 cut(s) 333
BspQI GCTCTTC 3 cut(s) 171, 347, 564
BspT104I TTCGAA 1 cut(s) 567
BsrGI TGTACA 1 cut(s) 210
BsrI ACTGG 1 cut(s) 486
BssMI GATC 2 cut(s) 298, 325
Bst2UI CCWGG 2 cut(s) 236, 881
Bst4CI ACNGT 4 cut(s) 9, 62, 283, 809
Bst6I CTCTTC 6 cut(s) 171, 347, 402, 564, 657, 862
BstAUI TGTACA 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 567
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 3 cut(s) 345, 384, 647
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 2 cut(s) 301, 328
BstMAI GTCTC 2 cut(s) 380, 614
BstMBI GATC 2 cut(s) 298, 325
BstMWI GCNNNNNNNGC 2 cut(s) 389, 796
BstNI CCWGG 2 cut(s) 236, 881
BstNSI RCATGY 2 cut(s) 444, 689
BstSCI CCNGG 2 cut(s) 234, 879
BstSLI GKGCMC 1 cut(s) 112
BstV1I GCAGC 4 cut(s) 284, 472, 549, 589
BstX2I RGATCY 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 105
BstYI RGATCY 1 cut(s) 325
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 67, 288
BveI ACCTGC 1 cut(s) 768
Cac8I GCNNGC 1 cut(s) 687
CciI TCATGA 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 757
CsiI ACCWGGT 1 cut(s) 879
Csp6I GTAC 2 cut(s) 211, 817
CviAII CATG 7 cut(s) 85, 208, 441, 496, 583, 686, 774
CviJI RGCY 9 cut(s) 181, 205, 316, 357, 469, 485, 574, 602, 854
CviKI_1 RGCY 9 cut(s) 181, 205, 316, 357, 469, 485, 574, 602, 854
CviQI GTAC 2 cut(s) 211, 817
DdeI CTNAG 3 cut(s) 345, 384, 647
DpnI GATC 2 cut(s) 300, 327
DpnII GATC 2 cut(s) 298, 325
Eam1104I CTCTTC 6 cut(s) 171, 347, 402, 564, 657, 862
EarI CTCTTC 6 cut(s) 171, 347, 402, 564, 657, 862
Ecl136II GAGCTC 1 cut(s) 357
Eco24I GRGCYC 2 cut(s) 207, 359
Eco47I GGWCC 1 cut(s) 757
Eco53kI GAGCTC 1 cut(s) 357
Eco81I CCTNAGG 1 cut(s) 345
EcoICRI GAGCTC 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 741
EcoRII CCWGG 2 cut(s) 234, 879
EcoT22I ATGCAT 2 cut(s) 442, 779
EcoT38I GRGCYC 2 cut(s) 207, 359
FaeI CATG 7 cut(s) 88, 211, 444, 499, 586, 689, 777
FalI AAGNNNNNCTT 2 cut(s) 124, 156
FaqI GGGAC 1 cut(s) 795
FatI CATG 7 cut(s) 84, 207, 440, 495, 582, 685, 773
FauNDI CATATG 1 cut(s) 426
Fnu4HI GCNGC 5 cut(s) 273, 486, 538, 603, 683
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 2 cut(s) 207, 359
Fsp4HI GCNGC 5 cut(s) 273, 486, 538, 603, 683
FspBI CTAG 6 cut(s) 80, 317, 414, 626, 731, 892
GluI GCNGC 5 cut(s) 273, 486, 538, 603, 683
HaeIII GGCC 1 cut(s) 469
Hin1II CATG 7 cut(s) 88, 211, 444, 499, 586, 689, 777
HinfI GANTC 2 cut(s) 36, 410
HphI GGTGA 4 cut(s) 247, 333, 566, 857
Hpy166II GTNNAC 3 cut(s) 65, 196, 694
Hpy188I TCNGA 5 cut(s) 266, 522, 592, 648, 841
Hpy188III TCNNGA 6 cut(s) 80, 121, 197, 414, 583, 731
Hpy8I GTNNAC 3 cut(s) 65, 196, 694
HpyAV CCTTC 5 cut(s) 194, 368, 468, 527, 834
HpyCH4III ACNGT 4 cut(s) 9, 62, 283, 809
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 7 cut(s) 146, 392, 440, 689, 763, 777, 799
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 796
HpyF3I CTNAG 3 cut(s) 345, 384, 647
HpySE526I ACGT 1 cut(s) 622
Hsp92II CATG 7 cut(s) 88, 211, 444, 499, 586, 689, 777
Kzo9I GATC 2 cut(s) 298, 325
LguI GCTCTTC 3 cut(s) 171, 347, 564
Lsp1109I GCAGC 4 cut(s) 284, 472, 549, 589
LweI GCATC 2 cut(s) 549, 660
MabI ACCWGGT 1 cut(s) 879
MaeI CTAG 6 cut(s) 80, 317, 414, 626, 731, 892
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 5 cut(s) 121, 253, 339, 845, 869
MalI GATC 2 cut(s) 300, 327
MboI GATC 2 cut(s) 298, 325
MboII GAAGA 8 cut(s) 101, 188, 260, 364, 419, 581, 674, 849
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 3 cut(s) 112, 207, 359
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 8 cut(s) 85, 340, 630, 660, 664, 667, 835, 865
Mph1103I ATGCAT 2 cut(s) 442, 779
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 2 cut(s) 11, 446
MspR9I CCNGG 2 cut(s) 236, 881
MunI CAATTG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 2 cut(s) 236, 881
MwoI GCNNNNNNNGC 2 cut(s) 389, 796
NdeI CATATG 1 cut(s) 426
NdeII GATC 2 cut(s) 298, 325
NlaIII CATG 7 cut(s) 88, 211, 444, 499, 586, 689, 777
NmuCI GTSAC 5 cut(s) 121, 253, 339, 845, 869
NsiI ATGCAT 2 cut(s) 442, 779
NspI RCATGY 2 cut(s) 444, 689
NspV TTCGAA 1 cut(s) 567
PaeI GCATGC 1 cut(s) 689
PagI TCATGA 1 cut(s) 582
PciSI GCTCTTC 3 cut(s) 171, 347, 564
PctI GAATGC 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 5 cut(s) 274, 487, 539, 604, 684
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PsiI TTATAA 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 234, 879
PspGI CCWGG 2 cut(s) 234, 879
PspPI GGNCC 1 cut(s) 757
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 2 cut(s) 212, 818
RsaNI GTAC 2 cut(s) 211, 817
SacI GAGCTC 1 cut(s) 359
SapI GCTCTTC 3 cut(s) 171, 347, 564
SaqAI TTAA 2 cut(s) 11, 446
SatI GCNGC 5 cut(s) 273, 486, 538, 603, 683
Sau3AI GATC 2 cut(s) 298, 325
Sau96I GGNCC 1 cut(s) 757
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 2 cut(s) 236, 881
SduI GDGCHC 3 cut(s) 112, 207, 359
SexAI ACCWGGT 1 cut(s) 879
SfaNI GCATC 2 cut(s) 549, 660
SfuI TTCGAA 1 cut(s) 567
SinI GGWCC 1 cut(s) 757
SphI GCATGC 1 cut(s) 689
SsiI CCGC 2 cut(s) 331, 682
SspI AATATT 1 cut(s) 727
SspMI CTAG 6 cut(s) 80, 317, 414, 626, 731, 892
SstI GAGCTC 1 cut(s) 359
StyD4I CCNGG 2 cut(s) 234, 879
TaaI ACNGT 4 cut(s) 9, 62, 283, 809
TaiI ACGT 1 cut(s) 625
TaqI TCGA 1 cut(s) 567
TatI WGTACW 2 cut(s) 210, 816
TauI GCSGC 1 cut(s) 685
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 2 cut(s) 11, 446
Tru9I TTAA 2 cut(s) 11, 446
TscAI CASTG 2 cut(s) 67, 288
TseFI GTSAC 5 cut(s) 121, 253, 339, 845, 869
TseI GCWGC 4 cut(s) 272, 485, 537, 602
Tsp45I GTSAC 5 cut(s) 121, 253, 339, 845, 869
TspDTI ATGAA 4 cut(s) 17, 539, 546, 762
TspRI CASTG 2 cut(s) 67, 288
VpaK11BI GGWCC 1 cut(s) 757
XapI RAATTY 3 cut(s) 217, 741, 768
XbaI TCTAGA 3 cut(s) 79, 413, 730
XceI RCATGY 2 cut(s) 444, 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 6 cut(s) 80, 317, 414, 626, 731, 892
Zsp2I ATGCAT 2 cut(s) 442, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.