pycom06g06860

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013131
Physical Location & Seq
Reverse (-)
11048167 .. 11049090
924 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 924 bp
ATGGGCTCTCTCTTCTATCTCACATTGGTTGTTCTTTCATTCATATGTGCAGTGTTAACAAAAACTGAAGCTCAGAAGATCCAATCAGCCCGTCTTCTCGACCTTCTCATTCGAGACATCACCTTCAAGGCGTATGACACACGCATCAAGACAGGAACACTACACACTGTAAATTTACCGGCAAACTTCTCTGGCATATTTGTTGATACAGCAAGGTTCAGATGTGGAAGTCTGAGAAGGTACGGTGCGCAGATAAAAGAATTTCGTCTATGCACTGGTGTATCTGTGCATCCGTGTGCTGAGAGGGTTATGGTAGTTAGACAATACTTGGGATATAATTGGTCTTCAATATATTATGCCAACTATAACCTATCTGGATATCAGCTTGTTTCTCCAATTTTAGGCCTCTTAGCATATAATGCCGGTACTGATGTGAACTTCAGCAACCCTTTTGAGCTTGGCATTGAAGCCGGAGGAAAACCCATCAGCATTGACTTCAAAAACATCACAAGGATGAGCAACGAATTGGGTACGAGGCCATTATGTGCAAGTTTTGAAGGTGATGGCAAACTGACATTGGCAAGGGAAACTAAACCTTACATTTGTGCTGCCAAAAGGCATGGACATTTTGGGTTGGTCATCAACAAACCTATTCCGGTGCAGTTGAGGAAGAGAGTGAGCCAGTGGAAAGTCGCGGTTGGAAGCTCGGTTGGATCTACATTGGGTGCTTTTCTTTTGGGGCTGCTTCTGGTGGCAATGCTTGTGAAGGTGAAGAAGCAGTCGAGGATGGTGGAGATGGAGAGAAGGGCTTATGAAGAGGAAGCCTTACAGGTATCAATGGTTGGACATGTAAGGGCTCCTACCGCATCGGGTACTCGAACAACGCCAACAATCGAGCATGAGTATATAGCTCCTCCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

308

Amino Acids

34.06

Weight (kDa)

9.65

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 28 - 214 8.4e-63 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11950 AT4G22900
fragaria_vesca FvH4_5g01210
malus_domestica MD00G1122700.v1.1 MD04G1070700.v1.1
prunus_persica Prupe.5G087200_v2.0.a1
pyrus_communis pycom04g06390 pycom06g06860
rosa_chinensis RchiOBHm_Chr7g0199881
rosa_laevigata RLG00000003763
rosa_multiflora Rmu_sc0002748.1_g000013
rosa_roxburghii Rroxscaffold_3G00256410
rosa_rugosa Rorug07G0056800
rosa_samantha Rh7AG182100 Rh7BG185000 Rh7CG191600 Rh7DG184900
rosa_wichuraiana Rw7G015970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 249
AccII CGCG 1 cut(s) 695
AciI CCGC 2 cut(s) 695, 864
AclWI GGATC 2 cut(s) 73, 721
AcsI RAATTY 2 cut(s) 172, 260
AcuI CTGAAG 2 cut(s) 87, 424
AfaI GTAC 4 cut(s) 242, 427, 532, 874
AfiI CCNNNNNNNGG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 847
AgsI TTSAA 5 cut(s) 127, 348, 467, 499, 557
AluBI AGCT 5 cut(s) 71, 385, 457, 705, 911
AluI AGCT 5 cut(s) 71, 385, 457, 705, 911
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 2 cut(s) 73, 721
AoxI GGCC 2 cut(s) 403, 536
ApeKI GCWGC 2 cut(s) 608, 742
ApoI RAATTY 2 cut(s) 172, 260
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 112, 572, 781
BaeI ACNNNNGTAYC 4 cut(s) 264, 297, 417, 450
BanII GRGCYC 2 cut(s) 8, 859
BbsI GAAGAC 2 cut(s) 86, 336
BbvI GCAGC 2 cut(s) 595, 729
BccI CCATC 4 cut(s) 491, 557, 781, 790
BcoDI GTCTC 1 cut(s) 108
BisI GCNGC 2 cut(s) 609, 743
BlsI GCNGC 2 cut(s) 610, 744
BmiI GGNNCC 1 cut(s) 858
BmsI GCATC 3 cut(s) 153, 298, 875
BpiI GAAGAC 2 cut(s) 86, 336
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 2 cut(s) 178, 422
Bse1I ACTGG 2 cut(s) 280, 682
Bse3DI GCAATG 1 cut(s) 762
BseGI GGATG 3 cut(s) 289, 519, 792
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 3 cut(s) 86, 224, 291
BseNI ACTGG 2 cut(s) 280, 682
BseRI GAGGAG 2 cut(s) 903, 906
BseXI GCAGC 2 cut(s) 595, 729
BsgI GTGCAG 2 cut(s) 69, 680
Bsh1236I CGCG 1 cut(s) 695
BshFI GGCC 2 cut(s) 405, 538
BsiSI CCGG 4 cut(s) 179, 423, 471, 656
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 2 cut(s) 405, 538
Bsp1286I GDGCHC 2 cut(s) 8, 859
Bsp143I GATC 2 cut(s) 78, 713
BspACI CCGC 2 cut(s) 695, 864
BspANI GGCC 2 cut(s) 405, 538
BspCNI CTCAG 3 cut(s) 85, 225, 292
BspFNI CGCG 1 cut(s) 695
BspLI GGNNCC 1 cut(s) 858
BspPI GGATC 2 cut(s) 73, 721
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 2 cut(s) 178, 422
BsrI ACTGG 2 cut(s) 280, 682
BssAI RCCGGY 2 cut(s) 178, 422
BssMI GATC 2 cut(s) 78, 713
Bst4CI ACNGT 2 cut(s) 169, 245
Bst6I CTCTTC 3 cut(s) 17, 665, 810
BstAPI GCANNNNNTGC 1 cut(s) 419
BstDEI CTNAG 4 cut(s) 72, 233, 300, 409
BstF5I GGATG 3 cut(s) 289, 519, 792
BstFNI CGCG 1 cut(s) 695
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 81, 716
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 2 cut(s) 78, 713
BstMWI GCNNNNNNNGC 2 cut(s) 419, 863
BstNSI RCATGY 1 cut(s) 851
BstUI CGCG 1 cut(s) 695
BstV1I GCAGC 2 cut(s) 595, 729
BstV2I GAAGAC 2 cut(s) 86, 336
BstX2I RGATCY 2 cut(s) 78, 713
BstYI RGATCY 2 cut(s) 78, 713
BsuRI GGCC 2 cut(s) 405, 538
BtsCI GGATG 3 cut(s) 289, 519, 792
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 5 cut(s) 57, 165, 273, 689, 919
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 2 cut(s) 178, 422
Csp6I GTAC 4 cut(s) 241, 426, 531, 873
CviAII CATG 3 cut(s) 620, 848, 899
CviQI GTAC 4 cut(s) 241, 426, 531, 873
DdeI CTNAG 4 cut(s) 72, 233, 300, 409
DpnI GATC 2 cut(s) 80, 715
DpnII GATC 2 cut(s) 78, 713
Eam1104I CTCTTC 3 cut(s) 17, 665, 810
EarI CTCTTC 3 cut(s) 17, 665, 810
Eco147I AGGCCT 1 cut(s) 405
Eco24I GRGCYC 2 cut(s) 8, 859
Eco32I GATATC 1 cut(s) 380
Eco57I CTGAAG 2 cut(s) 87, 424
EcoRV GATATC 1 cut(s) 380
EcoT38I GRGCYC 2 cut(s) 8, 859
FaeI CATG 3 cut(s) 623, 851, 902
FatI CATG 3 cut(s) 619, 847, 898
FauNDI CATATG 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 609, 743
FokI GGATG 3 cut(s) 276, 526, 799
FriOI GRGCYC 2 cut(s) 8, 859
Fsp4HI GCNGC 2 cut(s) 609, 743
FspI TGCGCA 1 cut(s) 249
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 609, 743
HaeIII GGCC 2 cut(s) 405, 538
HapII CCGG 4 cut(s) 179, 423, 471, 656
HhaI GCGC 1 cut(s) 250
Hin1II CATG 3 cut(s) 623, 851, 902
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 4 cut(s) 179, 423, 471, 656
HphI GGTGA 3 cut(s) 112, 572, 781
Hpy166II GTNNAC 2 cut(s) 57, 436
Hpy188I TCNGA 3 cut(s) 75, 221, 234
Hpy188III TCNNGA 4 cut(s) 98, 113, 148, 375
Hpy8I GTNNAC 2 cut(s) 57, 436
HpyAV CCTTC 6 cut(s) 113, 133, 231, 551, 760, 798
HpyCH4III ACNGT 2 cut(s) 169, 245
HpyCH4V TGCA 5 cut(s) 50, 273, 289, 548, 661
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 863
HpyF3I CTNAG 4 cut(s) 72, 233, 300, 409
Hsp92II CATG 3 cut(s) 623, 851, 902
HspAI GCGC 1 cut(s) 248
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 78, 713
LmnI GCTCC 2 cut(s) 862, 916
Lsp1109I GCAGC 2 cut(s) 595, 729
LweI GCATC 3 cut(s) 153, 298, 875
MalI GATC 2 cut(s) 80, 715
MboI GATC 2 cut(s) 78, 713
MboII GAAGA 7 cut(s) 4, 86, 88, 336, 682, 784, 827
MflI RGATCY 2 cut(s) 78, 713
MhlI GDGCHC 2 cut(s) 8, 859
MluCI AATT 5 cut(s) 172, 260, 337, 396, 524
MmeI TCCRAC 3 cut(s) 679, 691, 823
MnlI CCTC 8 cut(s) 297, 416, 467, 528, 660, 777, 811, 924
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 3 cut(s) 43, 294, 512
MspI CCGG 4 cut(s) 179, 423, 471, 656
MvnI CGCG 1 cut(s) 695
MwoI GCNNNNNNNGC 2 cut(s) 419, 863
NdeI CATATG 1 cut(s) 44
NdeII GATC 2 cut(s) 78, 713
NlaIII CATG 3 cut(s) 623, 851, 902
NlaIV GGNNCC 1 cut(s) 858
NsbI TGCGCA 1 cut(s) 249
NspI RCATGY 1 cut(s) 851
PceI AGGCCT 1 cut(s) 405
PciI ACATGT 1 cut(s) 847
PkrI GCNGC 2 cut(s) 610, 744
PscI ACATGT 1 cut(s) 847
PspN4I GGNNCC 1 cut(s) 858
PsuI RGATCY 2 cut(s) 78, 713
RsaI GTAC 4 cut(s) 242, 427, 532, 874
RsaNI GTAC 4 cut(s) 241, 426, 531, 873
RseI CAYNNNNRTG 3 cut(s) 43, 294, 512
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 2 cut(s) 609, 743
Sau3AI GATC 2 cut(s) 78, 713
SduI GDGCHC 2 cut(s) 8, 859
SfaNI GCATC 3 cut(s) 153, 298, 875
SmiMI CAYNNNNRTG 3 cut(s) 43, 294, 512
Sse9I AATT 5 cut(s) 172, 260, 337, 396, 524
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 2 cut(s) 695, 864
StuI AGGCCT 1 cut(s) 405
TaaI ACNGT 2 cut(s) 169, 245
TaqI TCGA 5 cut(s) 99, 112, 782, 877, 894
TasI AATT 5 cut(s) 172, 260, 337, 396, 524
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 4 cut(s) 57, 172, 280, 689
TseI GCWGC 2 cut(s) 608, 742
TspDTI ATGAA 3 cut(s) 27, 31, 828
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 4 cut(s) 57, 172, 280, 689
XapI RAATTY 2 cut(s) 172, 260
XceI RCATGY 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.