Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006809

Physical Location & Seq

Genomic Coordinates Reverse (-)

13978807 .. 13985179

Gene Structure 6373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08780.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3324 bp

ATGAGACTATCAATTCGTTTCATTCCATTGGCCAATTATGTTCTTCGTATTGAATCACTTTGCTTTAGTTCTGAAGAACCTTTACAGTGGAAACCCCATGTTACAATCTGGTCTGCATGTTGGGCACACGATGACCACTGGAATTTGGGTTTGTGGTTCAAGTTGCACGGAGCAGGTGTTGACTGGAATACAAATTTTAACTCGAGTAATGAATCTGAGGACCCAGGTGACATGGAGACCAAACTACCATCTTCAAAATCTTTTGTTTCTAGCTCAGGAAGTGTAAATAGTGTAGATAATGACAATCTTGGTTTACTTAGTAAGAGAGGAGTTGTGTCTTCTTCCATGGTTATTTCTGAAACATTATTTGCTCCTTATGCTGTTGTTTATGGCTTCTTTAGTGGAAAAATAGAGGTTGTTCGCTTTGATTTGTTTGAGGGCCTAGCTCCTCTTGGTGGGAGTTCACATGATGGTGAGGTGAAGCCACAAATATCCAGACAGCTTTTTTCAGGGCACACGGGTGCTGTACTCTGTTTGGCAGCACATAGGATGGTGGGTTTTGCCAAAGGGTGGAGTTTCAATCAAGTTTTGGTGTCTGGAAGTATGGATTGCACAGTTCGCATATGGGATCTTGAAACTGGAAATCTCATCACAGTCATGCACCAACATGTGTGTCCAGTGCGCCAAATAATTCTTCCCCCAGCTCATACCTACCGTCCTTGGAGTGATTGTTTTCTCTCAGTTGGGGAGGATTCATGTGTTGCACTAGCTTCTCTCGAGACATTGCGAGTAGAGAGAGTGTTTTCCGGACATCCCAGCTATCCTGCAAAAGTTGTATGGGATGGTGGAAGAGGTTATATTGCATGTTTGTGCCGAAACCATTCAGGAACTGATGCTGTTGATATTTTGTACATTTGGGACGTAAAGACAGGTGCTCGAGAGCGGGTCCTCCGAGGGACGGCATCTCATTCAATGTTTGACCATTTTTGTAAAGGCATCAGCATAAATTCCACATCTGGTAGTGTATTGAATGTGAATACCTCAGTTTCCTCACTGCTTCTTCCAGTCATTGAAGAAGGGATCTCTACTCACACTCATCTGAATAATTCAGACAAATTGGCCACTTCCTCAAATATGGTGCCTGGTACTGTGGTTGGGTCCAATACTTCCAGAGTTAGTAGTGCTGAAAAACTATTTCCATCCTATCCAACGACCCTTCAAAGCAGCAAGCATCCGATCAAGTGCTCTTGCCCTTTTCCTGGAATTGCTGCTCTGAGTTTTGACCTTGCATCATTAGTGTTTCCTTATCACAAGGATGACTTGATGGCAAGTGGGAATAACAAGAAAGAGCTTAACCATGTGAAGGGGAAGGCATCAGAGACACCAAGTCCCCACAACATTCCTGTAGCGAATGGTTCTGGTGTGCATGGGAACTCGAATGACACTGCAGAAGAGAACGTATGGATTAAGACGCTTGAAGATTGTTTACTTCGATTTAGCTTGGCATTTTTGCACTTATGGAATGTGGATTCTGAGCTCGATAACATGCTTATAACTGACATGAAGCTGAAGAGACCAGATAACTTTTTTGTAGCTTCTGGTTTTCAAGGAGACAAAGGGTCTTTGACATTGGCATTTCCTAATTTGAATGCAAATCTTGAGCTTTGGAGAATGTCGTCAGAGTTTTGTGCAATGAGGTCACTCACAATGGTTTCCCTTGCTCAACGCATGATTAGCTTGTCACACACTAGTTCAAATGACAGCAGTTCTTTAGCAGCATTTTATACTAGGAATTTTGCAGATAAAGTTCCAGACACAAAGCCACCTTTACTCCAGCTTTTGGTGAGTTTCTGGCAAGATGAAAGTGAACATGTACGTATGGCTGCACGCTCTCTATTCCACTGTGCTGCTTCACGAGCGATTCCACTTCCACTGTGTAGTAAAAAAGAAAGTGGCTTTGCAAATCTGAGTGCTCTAAGTGGACTTGGAGAGAATGGGCATGTAAATTCACATGTAGAAGAAATATTGGCTAAGAAATTGTATTCCGACCAGCTGCCAGAACCACAAGGGATTTCTAAGGTTGAAGAATTTAATATTCTTGCATGGCTAGAATCATTTGAGATGCAAGATTGGATTTCTTGTGTTGGGGGGACAAGCCAAGATGCGATGACATCTCATATTATTGTTGCAGCGGCTTTGGCTATTTGGTACCCTAGTCTTGTAAAGCCATGTCTTGCCATGCTTGTTGTTCACCCATTAATGAAGCTGGTTATGGCAATGAATGAGAAATATAGTTCCACTGCAGCAGAGCTCCTTGCTGAAGGTATGGAGAGAACATGGAAACAGTGCATTAGTTCAGAAATACCTCGTCTGATTGGGGATATATATTTCCAGATAGAGTGTGTAAGTGGTCCATCTGCAAACTCAGCCTCACAAAATTTGGCTGTACCGGTTGGCCTTCGAGAGATATTGGTTGGTGTTCTTCTACCAAGTTTAGCTGTGGCTGATGTCCCAGGGTTTTTAACTGTTATGGAAAGCCAAATCTGGTCTACTGCATCTGATTCCCCTGTTCATCTAGTATCTCTTATGACTTTGATCAGGGTTGTGCGTAATTCTCCAAGATACTTGGCTCAATACCTTGATAAGGTAATTGACTTCATTTTACAAACTGTGGACCCGAGCAACTCAGTCATGCGCAAAACTTGCTTTCAAATTTCAATGACTGCATTAAAGGAAGTTGTACGTGCATTCCCAATGGTAGCTCTAAATGATACATGGACCAAATTGGCCGTTGGGGATGTGATTGGAGAGAGAAACAATGCTAGTATTCGGGTTTATGACATGCAAAGTGTTATGAAGATAAAAGTTTTGGATGCAAGTGGACCTCCCGGACTTCCAAATTTGCTTGCACCCAGTTCAGAAATGATGATAGTTACTGCCATTTCAGCTTTGGGCTTTTCCCCGGATGGAGAGGGGCTGGTTGCTTTCTCTGAGCATGGATTAATGATCAGATGGTGGTCATTGGGATCTGCGTGGTGGGAGAAACTGAGTCGAAACTTAGTTCCTGTCCAGTGCACAAAATTGATCTTTGTTCCTCCCTGGGAGGGATTCTCACCTAATTCTTCTAGGTCAAGCATAATGGCAAGCATTATGGGACATGATAGGCCTGCCAATATTCAGGAAAGCGCAAAGGGTTTGAGTCAGGCGGACAATATGAAACTATTGATTCACAATCTTGACCTCTCCTATCGATTAGAATGGGTTGGTGCACGGAAAGTACTTCTTACTAGGCATGGCCAAGAGTTGGCCAGTTTCCCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1108

Amino Acids

121.55

Weight (kDa)

6.15

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11270 AT4G11270
fragaria_vesca	FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240
malus_domestica	MD06G1091700.v1.1
prunus_persica	Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1
pyrus_communis	pycom06g08780
rosa_chinensis	RchiOBHm_Chr7g0196531
rosa_laevigata	RLG00000004007
rosa_multiflora	Rmu_co8334943.1_g000001 Rmu_sc0013350.1_g000008 Rmu_sc0017231.1_g000007
rosa_roxburghii	Rroxscaffold_3G00259220
rosa_rugosa	Rorug07G0034400
rosa_samantha	Rh7AG158600 Rh7BG160600 Rh7CG167000 Rh7DG159800
rosa_wichuraiana	Rw7G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1553
AarI	CACCTGC	1 cut(s)	164
Acc16I	TGCGCA	1 cut(s)	2696
Acc36I	ACCTGC	1 cut(s)	164
Acc65I	GGTACC	1 cut(s)	2208
AccB1I	GGYRCC	2 cut(s)	1138, 2208
AccB7I	CCANNNNNTGG	3 cut(s)	570, 1840, 3304
AccBSI	CCGCTC	1 cut(s)	943
AccI	GTMKAC	1 cut(s)	2549
AccIII	TCCGGA	1 cut(s)	806
AciI	CCGC	3 cut(s)	943, 2192, 3206
AclWI	GGATC	3 cut(s)	636, 1088, 3034
AcoI	YGGCCR	5 cut(s)	30, 1119, 2787, 3295, 3306
AcsI	RAATTY	9 cut(s)	142, 193, 1006, 1792, 2005, 2087, 2437, 2712, 2899
AcuI	CTGAAG	3 cut(s)	93, 1589, 2340
AfaI	GTAC	8 cut(s)	528, 911, 1147, 1875, 2210, 2448, 2742, 3279
AfiI	CCNNNNNNNGG	9 cut(s)	455, 570, 958, 1259, 1363, 1840, 2644, 3104, 3304
AflIII	ACRYGT	3 cut(s)	667, 1870, 2011
AgeI	ACCGGT	1 cut(s)	2449
AhdI	GACNNNNNGTC	2 cut(s)	1386, 1618
AhlI	ACTAGT	1 cut(s)	1748
AjnI	CCWGG	5 cut(s)	223, 1141, 1258, 2512, 3098
AjuI	GAANNNNNNNTTGG	2 cut(s)	678, 710
AleI	CACNNNNGTG	1 cut(s)	519
Alw21I	GWGCWC	7 cut(s)	937, 1247, 1539, 1975, 2313, 3077, 3271
Alw26I	GTCTC	5 cut(s)	230, 773, 1373, 1567, 1605
Alw44I	GTGCAC	2 cut(s)	3073, 3267
AlwI	GGATC	3 cut(s)	636, 1088, 3034
AlwNI	CAGNNNCTG	1 cut(s)	890
Ama87I	CYCGRG	4 cut(s)	202, 776, 936, 2677
Aor13HI	TCCGGA	1 cut(s)	806
AoxI	GGCC	8 cut(s)	30, 439, 1119, 2455, 2787, 3164, 3295, 3306
ApaLI	GTGCAC	2 cut(s)	3073, 3267
ApeKI	GCWGC	9 cut(s)	539, 1224, 1268, 1775, 1883, 1907, 2053, 2189, 2303
ApoI	RAATTY	9 cut(s)	142, 193, 1006, 1792, 2005, 2087, 2437, 2712, 2899
ArsI	GACNNNNNNTTYG	1 cut(s)	29
AseI	ATTAAT	2 cut(s)	2258, 3002
AsiGI	ACCGGT	1 cut(s)	2449
Asp700I	GAANNNNTTC	1 cut(s)	880
Asp718I	GGTACC	1 cut(s)	2208
AspLEI	GCGC	3 cut(s)	684, 2697, 3188
AspS9I	GGNCC	8 cut(s)	220, 439, 946, 1158, 2411, 2674, 2778, 2882
AsuC2I	CCSGG	2 cut(s)	2889, 2963
AsuHPI	GGTGA	6 cut(s)	239, 485, 490, 1855, 2243, 3105
AvaI	CYCGRG	4 cut(s)	202, 776, 936, 2677
AvaII	GGWCC	7 cut(s)	220, 946, 1158, 2411, 2674, 2778, 2882
BaeGI	GKGCMC	4 cut(s)	127, 516, 3077, 3271
BaeI	ACNNNNGTAYC	4 cut(s)	1137, 1170, 2200, 2233
BalI	TGGCCA	4 cut(s)	32, 1121, 3297, 3308
BanI	GGYRCC	2 cut(s)	1138, 2208
BanII	GRGCYC	2 cut(s)	1539, 2313
BarI	GAAGNNNNNNTAC	4 cut(s)	66, 98, 1470, 1502
BauI	CACGAG	1 cut(s)	1914
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	7 cut(s)	937, 1247, 1539, 1975, 2313, 3077, 3271
BbvI	GCAGC	9 cut(s)	551, 1236, 1255, 1787, 1870, 1894, 2040, 2201, 2315
BccI	CCATC	9 cut(s)	256, 464, 544, 836, 1207, 1318, 2422, 2960, 3006
BceAI	ACGGC	2 cut(s)	975, 2774
BciT130I	CCWGG	5 cut(s)	225, 1143, 1260, 2514, 3100
BclI	TGATCA	2 cut(s)	2595, 3006
BcnI	CCSGG	2 cut(s)	2889, 2963
BcoDI	GTCTC	5 cut(s)	230, 773, 1373, 1567, 1605
BcuI	ACTAGT	1 cut(s)	1748
BfmI	CTRYAG	3 cut(s)	1404, 1446, 2301
BfuAI	ACCTGC	1 cut(s)	164
BmcAI	AGTACT	1 cut(s)	3279
Bme1390I	CCNGG	7 cut(s)	225, 1143, 1260, 2514, 2889, 2963, 3100
Bme18I	GGWCC	7 cut(s)	220, 946, 1158, 2411, 2674, 2778, 2882
BmeRI	GACNNNNNGTC	2 cut(s)	1386, 1618
BmeT110I	CYCGRG	4 cut(s)	202, 776, 936, 2677
BmgT120I	GGNCC	8 cut(s)	220, 439, 946, 1158, 2411, 2674, 2778, 2882
BmiI	GGNNCC	6 cut(s)	222, 947, 1140, 1159, 2210, 2676
BmrFI	CCNGG	7 cut(s)	225, 1143, 1260, 2514, 2889, 2963, 3100
BmrI	ACTGGG	1 cut(s)	2907
BmuI	ACTGGG	1 cut(s)	2907
BpiI	GAAGAC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	3095, 3127
BpmI	CTGGAG	1 cut(s)	1817
Bpu10I	CCTNAGC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	1679
BpuMI	CCSGG	2 cut(s)	2889, 2963
Bsa29I	ATCGAT	1 cut(s)	3250
BsaAI	YACGTR	2 cut(s)	1877, 2744
BsaI	GGTCTC	2 cut(s)	230, 1567
BsaJI	CCNNGG	9 cut(s)	223, 345, 719, 952, 2512, 2513, 2961, 3098, 3099
BsaWI	WCCGGW	2 cut(s)	806, 2449
BsaXI	ACNNNNNCTCC	6 cut(s)	162, 192, 715, 745, 1815, 1845
Bsc4I	CCNNNNNNNGG	9 cut(s)	455, 570, 958, 1259, 1363, 1840, 2644, 3104, 3304
Bse118I	RCCGGY	1 cut(s)	2449
Bse1I	ACTGG	8 cut(s)	143, 188, 643, 677, 1064, 2913, 3070, 3309
Bse3DI	GCAATG	3 cut(s)	782, 1698, 2283
BseAI	TCCGGA	1 cut(s)	806
BseBI	CCWGG	5 cut(s)	225, 1143, 1260, 2514, 3100
BseCI	ATCGAT	1 cut(s)	3250
BseDI	CCNNGG	9 cut(s)	223, 345, 719, 952, 2512, 2513, 2961, 3098, 3099
BseGI	GGATG	9 cut(s)	555, 811, 847, 1199, 1231, 1321, 2803, 2878, 2971
BseLI	CCNNNNNNNGG	9 cut(s)	455, 570, 958, 1259, 1363, 1840, 2644, 3104, 3304
BseMI	GCAATG	3 cut(s)	782, 1698, 2283
BseNI	ACTGG	8 cut(s)	143, 188, 643, 677, 1064, 2913, 3070, 3309
BseRI	GAGGAG	2 cut(s)	342, 438
BseSI	GKGCMC	4 cut(s)	127, 516, 3077, 3271
BseXI	GCAGC	9 cut(s)	551, 1236, 1255, 1787, 1870, 1894, 2040, 2201, 2315
BseYI	CCCAGC	2 cut(s)	700, 815
BsgI	GTGCAG	1 cut(s)	1869
BshFI	GGCC	8 cut(s)	32, 441, 1121, 2457, 2789, 3166, 3297, 3308
BshNI	GGYRCC	2 cut(s)	1138, 2208
BshTI	ACCGGT	1 cut(s)	2449
BshVI	ATCGAT	1 cut(s)	3250
BsiHKAI	GWGCWC	7 cut(s)	937, 1247, 1539, 1975, 2313, 3077, 3271
BsiHKCI	CYCGRG	4 cut(s)	202, 776, 936, 2677
BsiSI	CCGG	4 cut(s)	807, 2450, 2889, 2963
BslFI	GGGAC	6 cut(s)	932, 970, 1374, 2164, 2495, 3168
BslI	CCNNNNNNNGG	9 cut(s)	455, 570, 958, 1259, 1363, 1840, 2644, 3104, 3304
BsmAI	GTCTC	5 cut(s)	230, 773, 1373, 1567, 1605
BsmFI	GGGAC	6 cut(s)	932, 970, 1374, 2164, 2495, 3168
BsmI	GAATGC	2 cut(s)	1654, 2747
BsnI	GGCC	8 cut(s)	32, 441, 1121, 2457, 2789, 3166, 3297, 3308
Bso31I	GGTCTC	2 cut(s)	230, 1567
BsoBI	CYCGRG	4 cut(s)	202, 776, 936, 2677
Bsp1286I	GDGCHC	9 cut(s)	127, 516, 937, 1247, 1539, 1975, 2313, 3077, 3271
Bsp13I	TCCGGA	1 cut(s)	806
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	7 cut(s)	628, 1080, 1236, 2595, 3006, 3026, 3084
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	3 cut(s)	943, 2192, 3206
BspANI	GGCC	8 cut(s)	32, 441, 1121, 2457, 2789, 3166, 3297, 3308
BspDI	ATCGAT	1 cut(s)	3250
BspEI	TCCGGA	1 cut(s)	806
BspLI	GGNNCC	6 cut(s)	222, 947, 1140, 1159, 2210, 2676
BspMAI	CTGCAG	2 cut(s)	1450, 2305
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	3 cut(s)	636, 1088, 3034
BspT107I	GGYRCC	2 cut(s)	1138, 2208
BspTNI	GGTCTC	2 cut(s)	230, 1567
BsrBI	CCGCTC	1 cut(s)	943
BsrDI	GCAATG	3 cut(s)	782, 1698, 2283
BsrFI	RCCGGY	1 cut(s)	2449
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	8 cut(s)	143, 188, 643, 677, 1064, 2913, 3070, 3309
BssAI	RCCGGY	1 cut(s)	2449
BssECI	CCNNGG	9 cut(s)	223, 345, 719, 952, 2512, 2513, 2961, 3098, 3099
BssMI	GATC	7 cut(s)	628, 1080, 1236, 2595, 3006, 3026, 3084
BssSI	CACGAG	1 cut(s)	1914
BssT1I	CCWWGG	2 cut(s)	345, 719
Bst2BI	CACGAG	1 cut(s)	1914
Bst2UI	CCWGG	5 cut(s)	225, 1143, 1260, 2514, 3100
Bst6I	CTCTTC	3 cut(s)	844, 1446, 1565
BstAPI	GCANNNNNTGC	1 cut(s)	2703
BstAUI	TGTACA	1 cut(s)	909
BstBAI	YACGTR	2 cut(s)	1877, 2744
BstC8I	GCNNGC	5 cut(s)	1229, 1888, 2907, 3145, 3168
BstDSI	CCRYGG	1 cut(s)	345
BstENI	CCTNNNNNAGG	1 cut(s)	2642
BstF5I	GGATG	9 cut(s)	555, 811, 847, 1199, 1231, 1321, 2803, 2878, 2971
BstHHI	GCGC	3 cut(s)	684, 2697, 3188
BstKTI	GATC	7 cut(s)	631, 1083, 1239, 2598, 3009, 3029, 3087
BstMAI	GTCTC	5 cut(s)	230, 773, 1373, 1567, 1605
BstMBI	GATC	7 cut(s)	628, 1080, 1236, 2595, 3006, 3026, 3084
BstMWI	GCNNNNNNNGC	9 cut(s)	122, 377, 618, 1734, 1916, 2198, 2426, 2703, 2945
BstNI	CCWGG	5 cut(s)	225, 1143, 1260, 2514, 3100
BstNSI	RCATGY	8 cut(s)	120, 671, 867, 1549, 1874, 2003, 2015, 2845
BstSCI	CCNGG	7 cut(s)	223, 1141, 1258, 2512, 2887, 2961, 3098
BstSFI	CTRYAG	3 cut(s)	1404, 1446, 2301
BstSLI	GKGCMC	4 cut(s)	127, 516, 3077, 3271
BstSNI	TACGTA	1 cut(s)	1877
BstV1I	GCAGC	9 cut(s)	551, 1236, 1255, 1787, 1870, 1894, 2040, 2201, 2315
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	3 cut(s)	628, 1080, 3026
BstYI	RGATCY	3 cut(s)	628, 1080, 3026
Bsu15I	ATCGAT	1 cut(s)	3250
BsuRI	GGCC	8 cut(s)	32, 441, 1121, 2457, 2789, 3166, 3297, 3308
BsuTUI	ATCGAT	1 cut(s)	3250
BtgI	CCRYGG	1 cut(s)	345
BtgZI	GCGATG	1 cut(s)	2180
BtsCI	GGATG	9 cut(s)	555, 811, 847, 1199, 1231, 1321, 2803, 2878, 2971
BtsI	GCAGTG	3 cut(s)	1052, 1443, 2298
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	5 cut(s)	1229, 1888, 2907, 3145, 3168
CaiI	CAGNNNCTG	1 cut(s)	890
CfoI	GCGC	3 cut(s)	684, 2697, 3188
Cfr10I	RCCGGY	1 cut(s)	2449
Cfr13I	GGNCC	8 cut(s)	220, 439, 946, 1158, 2411, 2674, 2778, 2882
ClaI	ATCGAT	1 cut(s)	3250
CseI	GACGC	1 cut(s)	1480
Csp6I	GTAC	8 cut(s)	527, 910, 1146, 1874, 2209, 2447, 2741, 3278
CspAI	ACCGGT	1 cut(s)	2449
CviQI	GTAC	8 cut(s)	527, 910, 1146, 1874, 2209, 2447, 2741, 3278
DpnI	GATC	7 cut(s)	630, 1082, 1238, 2597, 3008, 3028, 3086
DpnII	GATC	7 cut(s)	628, 1080, 1236, 2595, 3006, 3026, 3084
DriI	GACNNNNNGTC	2 cut(s)	1386, 1618
EaeI	YGGCCR	5 cut(s)	30, 1119, 2787, 3295, 3306
Eam1104I	CTCTTC	3 cut(s)	844, 1446, 1565
Eam1105I	GACNNNNNGTC	2 cut(s)	1386, 1618
EarI	CTCTTC	3 cut(s)	844, 1446, 1565
EciI	GGCGGA	1 cut(s)	3221
Ecl136II	GAGCTC	2 cut(s)	1537, 2311
Eco105I	TACGTA	1 cut(s)	1877
Eco130I	CCWWGG	2 cut(s)	345, 719
Eco147I	AGGCCT	1 cut(s)	3166
Eco24I	GRGCYC	2 cut(s)	1539, 2313
Eco31I	GGTCTC	2 cut(s)	230, 1567
Eco47I	GGWCC	7 cut(s)	220, 946, 1158, 2411, 2674, 2778, 2882
Eco53kI	GAGCTC	2 cut(s)	1537, 2311
Eco57I	CTGAAG	3 cut(s)	93, 1589, 2340
Eco88I	CYCGRG	4 cut(s)	202, 776, 936, 2677
EcoICRI	GAGCTC	2 cut(s)	1537, 2311
EcoNI	CCTNNNNNAGG	1 cut(s)	2642
EcoO109I	RGGNCCY	3 cut(s)	220, 439, 946
EcoRII	CCWGG	5 cut(s)	223, 1141, 1258, 2512, 3098
EcoT14I	CCWWGG	2 cut(s)	345, 719
EcoT38I	GRGCYC	2 cut(s)	1539, 2313
ErhI	CCWWGG	2 cut(s)	345, 719
FalI	AAGNNNNNCTT	4 cut(s)	1304, 1336, 3267, 3299
FaqI	GGGAC	6 cut(s)	932, 970, 1374, 2164, 2495, 3168
FauI	CCCGC	1 cut(s)	936
FauNDI	CATATG	1 cut(s)	623
FbaI	TGATCA	2 cut(s)	2595, 3006
FblI	GTMKAC	1 cut(s)	2549
FokI	GGATG	9 cut(s)	562, 798, 854, 1186, 1218, 1328, 2810, 2885, 2978
FriOI	GRGCYC	2 cut(s)	1539, 2313
FspI	TGCGCA	1 cut(s)	2696
GlaI	GCGC	3 cut(s)	683, 2696, 3187
GsaI	CCCAGC	2 cut(s)	704, 819
GsuI	CTGGAG	1 cut(s)	1817
HaeIII	GGCC	8 cut(s)	32, 441, 1121, 2457, 2789, 3166, 3297, 3308
HapII	CCGG	4 cut(s)	807, 2450, 2889, 2963
HgaI	GACGC	1 cut(s)	1480
HhaI	GCGC	3 cut(s)	684, 2697, 3188
Hin6I	GCGC	3 cut(s)	682, 2695, 3186
HinP1I	GCGC	3 cut(s)	682, 2695, 3186
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HpaII	CCGG	4 cut(s)	807, 2450, 2889, 2963
HphI	GGTGA	6 cut(s)	239, 485, 490, 1855, 2243, 3105
HpyAV	CCTTC	6 cut(s)	1070, 1226, 1357, 1363, 2315, 2468
HpyCH4IV	ACGT	4 cut(s)	921, 1458, 1876, 2743
HpyF10VI	GCNNNNNNNGC	9 cut(s)	122, 377, 618, 1734, 1916, 2198, 2426, 2703, 2945
HpySE526I	ACGT	4 cut(s)	921, 1458, 1876, 2743
HspAI	GCGC	3 cut(s)	682, 2695, 3186
Kpn2I	TCCGGA	1 cut(s)	806
KpnI	GGTACC	1 cut(s)	2212
Ksp22I	TGATCA	2 cut(s)	2595, 3006
Kzo9I	GATC	7 cut(s)	628, 1080, 1236, 2595, 3006, 3026, 3084
LmnI	GCTCC	4 cut(s)	170, 376, 451, 2316
Lsp1109I	GCAGC	9 cut(s)	551, 1236, 1255, 1787, 1870, 1894, 2040, 2201, 2315
MaeII	ACGT	4 cut(s)	921, 1458, 1876, 2743
MaeIII	GTNAC	5 cut(s)	100, 227, 1698, 1740, 2932
MalI	GATC	7 cut(s)	630, 1082, 1238, 2597, 3008, 3028, 3086
MbiI	CCGCTC	1 cut(s)	943
MboI	GATC	7 cut(s)	628, 1080, 1236, 2595, 3006, 3026, 3084
MflI	RGATCY	3 cut(s)	628, 1080, 3026
MhlI	GDGCHC	9 cut(s)	127, 516, 937, 1247, 1539, 1975, 2313, 3077, 3271
MlsI	TGGCCA	4 cut(s)	32, 1121, 3297, 3308
MluNI	TGGCCA	4 cut(s)	32, 1121, 3297, 3308
MlyI	GAGTC	2 cut(s)	3058, 3208
MmeI	TCCRAC	2 cut(s)	1232, 2070
Mox20I	TGGCCA	4 cut(s)	32, 1121, 3297, 3308
MroI	TCCGGA	1 cut(s)	806
MroXI	GAANNNNTTC	1 cut(s)	880
MscI	TGGCCA	4 cut(s)	32, 1121, 3297, 3308
MseI	TTAA	8 cut(s)	198, 1353, 1467, 2091, 2258, 2522, 2729, 3002
MslI	CAYNNNNRTG	6 cut(s)	471, 519, 656, 666, 868, 1314
Msp20I	TGGCCA	4 cut(s)	32, 1121, 3297, 3308
MspA1I	CMGCKG	2 cut(s)	2053, 2192
MspI	CCGG	4 cut(s)	807, 2450, 2889, 2963
MspR9I	CCNGG	7 cut(s)	225, 1143, 1260, 2514, 2889, 2963, 3100
Mva1269I	GAATGC	2 cut(s)	1654, 2747
MvaI	CCWGG	5 cut(s)	225, 1143, 1260, 2514, 3100
MwoI	GCNNNNNNNGC	9 cut(s)	122, 377, 618, 1734, 1916, 2198, 2426, 2703, 2945
NciI	CCSGG	2 cut(s)	2889, 2963
NcoI	CCATGG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	623
NdeII	GATC	7 cut(s)	628, 1080, 1236, 2595, 3006, 3026, 3084
NlaIV	GGNNCC	6 cut(s)	222, 947, 1140, 1159, 2210, 2676
NmuCI	GTSAC	3 cut(s)	227, 1698, 1740
NsbI	TGCGCA	1 cut(s)	2696
NspI	RCATGY	8 cut(s)	120, 671, 867, 1549, 1874, 2003, 2015, 2845
OliI	CACNNNNGTG	1 cut(s)	519
PaeR7I	CTCGAG	3 cut(s)	202, 776, 936
PaqCI	CACCTGC	1 cut(s)	164
PasI	CCCWGGG	2 cut(s)	2513, 3099
PceI	AGGCCT	1 cut(s)	3166
PciI	ACATGT	3 cut(s)	667, 1870, 2011
PctI	GAATGC	2 cut(s)	1654, 2747
PdmI	GAANNNNTTC	1 cut(s)	880
PfeI	GAWTC	9 cut(s)	53, 212, 752, 1529, 1921, 2111, 2561, 3108, 3226
PflMI	CCANNNNNTGG	3 cut(s)	570, 1840, 3304
PfoI	TCCNGGA	2 cut(s)	1258, 2887
PinAI	ACCGGT	1 cut(s)	2449
PleI	GAGTC	2 cut(s)	3057, 3207
PpsI	GAGTC	2 cut(s)	3057, 3207
Ppu21I	YACGTR	2 cut(s)	1877, 2744
PpuMI	RGGWCCY	2 cut(s)	220, 946
PscI	ACATGT	3 cut(s)	667, 1870, 2011
PshBI	ATTAAT	2 cut(s)	2258, 3002
PsiI	TTATAA	1 cut(s)	1553
Psp124BI	GAGCTC	2 cut(s)	1539, 2313
Psp5II	RGGWCCY	2 cut(s)	220, 946
Psp6I	CCWGG	5 cut(s)	223, 1141, 1258, 2512, 3098
PspFI	CCCAGC	2 cut(s)	700, 815
PspGI	CCWGG	5 cut(s)	223, 1141, 1258, 2512, 3098
PspN4I	GGNNCC	6 cut(s)	222, 947, 1140, 1159, 2210, 2676
PspPI	GGNCC	8 cut(s)	220, 439, 946, 1158, 2411, 2674, 2778, 2882
PspPPI	RGGWCCY	2 cut(s)	220, 946
PspXI	VCTCGAGB	1 cut(s)	202
PstI	CTGCAG	2 cut(s)	1450, 2305
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	3 cut(s)	628, 1080, 3026
PvuII	CAGCTG	1 cut(s)	2053
RsaI	GTAC	8 cut(s)	528, 911, 1147, 1875, 2210, 2448, 2742, 3279
RsaNI	GTAC	8 cut(s)	527, 910, 1146, 1874, 2209, 2447, 2741, 3278
RseI	CAYNNNNRTG	6 cut(s)	471, 519, 656, 666, 868, 1314
SacI	GAGCTC	2 cut(s)	1539, 2313
SaqAI	TTAA	8 cut(s)	198, 1353, 1467, 2091, 2258, 2522, 2729, 3002
Sau3AI	GATC	7 cut(s)	628, 1080, 1236, 2595, 3006, 3026, 3084
Sau96I	GGNCC	8 cut(s)	220, 439, 946, 1158, 2411, 2674, 2778, 2882
ScaI	AGTACT	1 cut(s)	3279
SchI	GAGTC	2 cut(s)	3058, 3208
ScrFI	CCNGG	7 cut(s)	225, 1143, 1260, 2514, 2889, 2963, 3100
SduI	GDGCHC	9 cut(s)	127, 516, 937, 1247, 1539, 1975, 2313, 3077, 3271
SfcI	CTRYAG	3 cut(s)	1404, 1446, 2301
Sfr274I	CTCGAG	3 cut(s)	202, 776, 936
SinI	GGWCC	7 cut(s)	220, 946, 1158, 2411, 2674, 2778, 2882
SlaI	CTCGAG	3 cut(s)	202, 776, 936
SmiMI	CAYNNNNRTG	6 cut(s)	471, 519, 656, 666, 868, 1314
SmlI	CTYRAG	4 cut(s)	202, 776, 936, 1658
SmoI	CTYRAG	4 cut(s)	202, 776, 936, 1658
SnaBI	TACGTA	1 cut(s)	1877
SpeI	ACTAGT	1 cut(s)	1748
SseBI	AGGCCT	1 cut(s)	3166
SsiI	CCGC	3 cut(s)	943, 2192, 3206
SspI	AATATT	3 cut(s)	2025, 2095, 3175
SstI	GAGCTC	2 cut(s)	1539, 2313
StuI	AGGCCT	1 cut(s)	3166
StyD4I	CCNGG	7 cut(s)	223, 1141, 1258, 2512, 2887, 2961, 3098
StyI	CCWWGG	2 cut(s)	345, 719
TaiI	ACGT	4 cut(s)	924, 1461, 1879, 2746
TaqI	TCGA	9 cut(s)	203, 777, 937, 1436, 1492, 1539, 2461, 3052, 3250
TatI	WGTACW	3 cut(s)	526, 909, 3277
TauI	GCSGC	1 cut(s)	2195
TfiI	GAWTC	9 cut(s)	53, 212, 752, 1529, 1921, 2111, 2561, 3108, 3226
Tru1I	TTAA	8 cut(s)	198, 1353, 1467, 2091, 2258, 2522, 2729, 3002
Tru9I	TTAA	8 cut(s)	198, 1353, 1467, 2091, 2258, 2522, 2729, 3002
TseFI	GTSAC	3 cut(s)	227, 1698, 1740
TseI	GCWGC	9 cut(s)	539, 1224, 1268, 1775, 1883, 1907, 2053, 2189, 2303
Tsp45I	GTSAC	3 cut(s)	227, 1698, 1740
TspGWI	ACGGA	2 cut(s)	183, 3286
Van91I	CCANNNNNTGG	3 cut(s)	570, 1840, 3304
VneI	GTGCAC	2 cut(s)	3073, 3267
VpaK11BI	GGWCC	7 cut(s)	220, 946, 1158, 2411, 2674, 2778, 2882
VspI	ATTAAT	2 cut(s)	2258, 3002
XagI	CCTNNNNNAGG	1 cut(s)	2642
XapI	RAATTY	9 cut(s)	142, 193, 1006, 1792, 2005, 2087, 2437, 2712, 2899
XceI	RCATGY	8 cut(s)	120, 671, 867, 1549, 1874, 2003, 2015, 2845
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2947
XhoI	CTCGAG	3 cut(s)	202, 776, 936
XmiI	GTMKAC	1 cut(s)	2549
XmnI	GAANNNNTTC	1 cut(s)	880
ZrmI	AGTACT	1 cut(s)	3279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.