WD repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G11270 AT4G11270 |
| fragaria_vesca | FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 |
| malus_domestica | MD06G1091700.v1.1 |
| prunus_persica | Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 |
| pyrus_communis | pycom06g08780 |
| rosa_chinensis | RchiOBHm_Chr7g0196531 |
| rosa_laevigata | RLG00000004007 |
| rosa_multiflora | Rmu_co8334943.1_g000001 Rmu_sc0013350.1_g000008 Rmu_sc0017231.1_g000007 |
| rosa_roxburghii | Rroxscaffold_3G00259220 |
| rosa_rugosa | Rorug07G0034400 |
| rosa_samantha | Rh7AG158600 Rh7BG160600 Rh7CG167000 Rh7DG159800 |
| rosa_wichuraiana | Rw7G013860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2729 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2887 |
| Acc36I | ACCTGC | 1 cut(s) | 3958 |
| Acc65I | GGTACC | 1 cut(s) | 3354 |
| AccB1I | GGYRCC | 2 cut(s) | 2308, 3354 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1737, 1837 |
| AccBSI | CCGCTC | 1 cut(s) | 2113 |
| AccI | GTMKAC | 4 cut(s) | 566, 1086, 1277, 3695 |
| AccII | CGCG | 3 cut(s) | 20, 293, 424 |
| AccIII | TCCGGA | 1 cut(s) | 1439 |
| AclWI | GGATC | 6 cut(s) | 6, 99, 112, 660, 989, 1803 |
| AcoI | YGGCCR | 6 cut(s) | 184, 210, 2289, 2388, 3130, 3420 |
| AcsI | RAATTY | 8 cut(s) | 1307, 1366, 1965, 2176, 2982, 3181, 3583, 3862 |
| AcuI | CTGAAG | 6 cut(s) | 1017, 1193, 2765, 2993, 3249, 3486 |
| AdeI | CACNNNGTG | 2 cut(s) | 1640, 3904 |
| AfaI | GTAC | 8 cut(s) | 898, 1590, 1876, 2081, 3051, 3356, 3481, 3928 |
| AflIII | ACRYGT | 3 cut(s) | 1280, 3046, 3175 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 2562, 2794 |
| AjiI | CACGTC | 1 cut(s) | 1637 |
| AjnI | CCWGG | 7 cut(s) | 207, 1611, 1972, 2311, 2434, 3160, 3771 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1845, 1877 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 122, 154 |
| Alw21I | GWGCWC | 6 cut(s) | 1698, 2107, 2841, 3149, 3459, 3909 |
| Alw26I | GTCTC | 7 cut(s) | 1162, 1940, 2549, 2743, 2895, 3161, 3603 |
| Alw44I | GTGCAC | 1 cut(s) | 3905 |
| AlwI | GGATC | 6 cut(s) | 6, 99, 112, 660, 989, 1803 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1691 |
| Ama87I | CYCGRG | 3 cut(s) | 1943, 2106, 3090 |
| Aor13HI | TCCGGA | 1 cut(s) | 1439 |
| ApaI | GGGCCC | 1 cut(s) | 1844 |
| ApaLI | GTGCAC | 1 cut(s) | 3905 |
| ApoI | RAATTY | 8 cut(s) | 1307, 1366, 1965, 2176, 2982, 3181, 3583, 3862 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 397, 429 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1039, 2047, 3942 |
| Asp718I | GGTACC | 1 cut(s) | 3354 |
| AspLEI | GCGC | 2 cut(s) | 196, 293 |
| AspS9I | GGNCC | 7 cut(s) | 30, 1609, 1840, 1841, 2116, 3158, 3557 |
| AsuHPI | GGTGA | 8 cut(s) | 41, 49, 412, 1247, 2366, 2798, 3031, 3702 |
| AsuII | TTCGAA | 1 cut(s) | 416 |
| AvaI | CYCGRG | 3 cut(s) | 1943, 2106, 3090 |
| AvaII | GGWCC | 3 cut(s) | 30, 2116, 3158 |
| BaeGI | GKGCMC | 2 cut(s) | 1844, 3909 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3346, 3379 |
| BalI | TGGCCA | 6 cut(s) | 186, 212, 2291, 2390, 3132, 3422 |
| BamHI | GGATCC | 1 cut(s) | 104 |
| BanI | GGYRCC | 2 cut(s) | 2308, 3354 |
| BanII | GRGCYC | 4 cut(s) | 1844, 2841, 3149, 3459 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2646, 2678 |
| BbsI | GAAGAC | 1 cut(s) | 1500 |
| Bbv12I | GWGCWC | 6 cut(s) | 1698, 2107, 2841, 3149, 3459, 3909 |
| BbvCI | CCTCAGC | 1 cut(s) | 792 |
| BceAI | ACGGC | 3 cut(s) | 53, 1326, 2496 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 209, 243 |
| BciT130I | CCWGG | 7 cut(s) | 209, 1613, 1974, 2313, 2436, 3162, 3773 |
| BcoDI | GTCTC | 7 cut(s) | 1162, 1940, 2549, 2743, 2895, 3161, 3603 |
| BfaI | CTAG | 8 cut(s) | 1013, 1160, 1569, 2964, 3360, 3389, 3785, 3902 |
| BfmI | CTRYAG | 3 cut(s) | 669, 2580, 3447 |
| BfuAI | ACCTGC | 1 cut(s) | 3958 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 209 |
| BlpI | GCTNAGC | 2 cut(s) | 270, 519 |
| Bme1390I | CCNGG | 7 cut(s) | 209, 1613, 1974, 2313, 2436, 3162, 3773 |
| Bme18I | GGWCC | 3 cut(s) | 30, 2116, 3158 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 2562, 2794 |
| BmeT110I | CYCGRG | 3 cut(s) | 1943, 2106, 3090 |
| BmgBI | CACGTC | 1 cut(s) | 1637 |
| BmgT120I | GGNCC | 7 cut(s) | 30, 1609, 1840, 1841, 2116, 3158, 3557 |
| BmiI | GGNNCC | 8 cut(s) | 106, 115, 131, 723, 1842, 2117, 2310, 3356 |
| BmrFI | CCNGG | 7 cut(s) | 209, 1613, 1974, 2313, 2436, 3162, 3773 |
| BmrI | ACTGGG | 2 cut(s) | 1815, 1838 |
| BmsI | GCATC | 9 cut(s) | 991, 2141, 2175, 2416, 2474, 3209, 3298, 3504, 3710 |
| BmuI | ACTGGG | 2 cut(s) | 1815, 1838 |
| BpiI | GAAGAC | 1 cut(s) | 1500 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 263, 295 |
| BpmI | CTGGAG | 3 cut(s) | 265, 2863, 3183 |
| Bpu10I | CCTNAGC | 1 cut(s) | 792 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 270, 519 |
| Bpu14I | TTCGAA | 1 cut(s) | 416 |
| BpuEI | CTTGAG | 1 cut(s) | 2855 |
| BsaAI | YACGTR | 1 cut(s) | 3053 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2739 |
| BsaI | GGTCTC | 1 cut(s) | 2743 |
| BsaWI | WCCGGW | 1 cut(s) | 1439 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 122, 152, 801, 831, 1882, 1912 |
| Bse118I | RCCGGY | 2 cut(s) | 98, 354 |
| Bse3DI | GCAATG | 2 cut(s) | 271, 349 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2739 |
| BseAI | TCCGGA | 1 cut(s) | 1439 |
| BseBI | CCWGG | 7 cut(s) | 209, 1613, 1974, 2313, 2436, 3162, 3773 |
| BseGI | GGATG | 9 cut(s) | 637, 1506, 1722, 1742, 1978, 2095, 2407, 2497, 3397 |
| BseJI | GATNNNNATC | 1 cut(s) | 2739 |
| BseMI | GCAATG | 2 cut(s) | 271, 349 |
| BseRI | GAGGAG | 2 cut(s) | 130, 376 |
| BseSI | GKGCMC | 2 cut(s) | 1844, 3909 |
| BseYI | CCCAGC | 3 cut(s) | 1867, 1982, 2568 |
| BsgI | GTGCAG | 2 cut(s) | 3045, 3561 |
| Bsh1236I | CGCG | 3 cut(s) | 20, 293, 424 |
| BshNI | GGYRCC | 2 cut(s) | 2308, 3354 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1698, 2107, 2841, 3149, 3459, 3909 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1943, 2106, 3090 |
| BsiSI | CCGG | 3 cut(s) | 99, 355, 1440 |
| BslFI | GGGAC | 7 cut(s) | 266, 760, 2021, 2140, 2550, 2556, 3310 |
| BsmAI | GTCTC | 7 cut(s) | 1162, 1940, 2549, 2743, 2895, 3161, 3603 |
| BsmFI | GGGAC | 7 cut(s) | 266, 760, 2021, 2140, 2550, 2556, 3310 |
| BsmI | GAATGC | 4 cut(s) | 664, 2602, 2830, 3497 |
| Bso31I | GGTCTC | 1 cut(s) | 2743 |
| BsoBI | CYCGRG | 3 cut(s) | 1943, 2106, 3090 |
| Bsp119I | TTCGAA | 1 cut(s) | 416 |
| Bsp120I | GGGCCC | 1 cut(s) | 1840 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1698, 1844, 2107, 2841, 3149, 3459, 3909 |
| Bsp13I | TCCGGA | 1 cut(s) | 1439 |
| Bsp1407I | TGTACA | 1 cut(s) | 2079 |
| Bsp143I | GATC | 7 cut(s) | 11, 104, 652, 981, 1009, 1795, 2734 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 270, 519 |
| Bsp19I | CCATGG | 4 cut(s) | 396, 1030, 1300, 1515 |
| BspEI | TCCGGA | 1 cut(s) | 1439 |
| BspFNI | CGCG | 3 cut(s) | 20, 293, 424 |
| BspHI | TCATGA | 1 cut(s) | 3889 |
| BspLI | GGNNCC | 8 cut(s) | 106, 115, 131, 723, 1842, 2117, 2310, 3356 |
| BspMAI | CTGCAG | 1 cut(s) | 3451 |
| BspMI | ACCTGC | 1 cut(s) | 3958 |
| BspPI | GGATC | 6 cut(s) | 6, 99, 112, 660, 989, 1803 |
| BspT104I | TTCGAA | 1 cut(s) | 416 |
| BspT107I | GGYRCC | 2 cut(s) | 2308, 3354 |
| BspTNI | GGTCTC | 1 cut(s) | 2743 |
| BsrBI | CCGCTC | 1 cut(s) | 2113 |
| BsrDI | GCAATG | 2 cut(s) | 271, 349 |
| BsrFI | RCCGGY | 2 cut(s) | 98, 354 |
| BsrGI | TGTACA | 1 cut(s) | 2079 |
| BssAI | RCCGGY | 2 cut(s) | 98, 354 |
| BssMI | GATC | 7 cut(s) | 11, 104, 652, 981, 1009, 1795, 2734 |
| BssNAI | GTATAC | 1 cut(s) | 567 |
| BssT1I | CCWWGG | 6 cut(s) | 377, 396, 1030, 1300, 1515, 1886 |
| Bst1107I | GTATAC | 1 cut(s) | 567 |
| Bst2UI | CCWGG | 7 cut(s) | 209, 1613, 1974, 2313, 2436, 3162, 3773 |
| Bst6I | CTCTTC | 3 cut(s) | 242, 2011, 2741 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1776 |
| BstAUI | TGTACA | 1 cut(s) | 2079 |
| BstBAI | YACGTR | 1 cut(s) | 3053 |
| BstBI | TTCGAA | 1 cut(s) | 416 |
| BstDSI | CCRYGG | 5 cut(s) | 396, 422, 1030, 1300, 1515 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3788 |
| BstF5I | GGATG | 9 cut(s) | 637, 1506, 1722, 1742, 1978, 2095, 2407, 2497, 3397 |
| BstFNI | CGCG | 3 cut(s) | 20, 293, 424 |
| BstHHI | GCGC | 2 cut(s) | 196, 293 |
| BstKTI | GATC | 7 cut(s) | 14, 107, 655, 984, 1012, 1798, 2737 |
| BstMAI | GTCTC | 7 cut(s) | 1162, 1940, 2549, 2743, 2895, 3161, 3603 |
| BstMBI | GATC | 7 cut(s) | 11, 104, 652, 981, 1009, 1795, 2734 |
| BstNI | CCWGG | 7 cut(s) | 209, 1613, 1974, 2313, 2436, 3162, 3773 |
| BstSCI | CCNGG | 7 cut(s) | 207, 1611, 1972, 2311, 2434, 3160, 3771 |
| BstSFI | CTRYAG | 3 cut(s) | 669, 2580, 3447 |
| BstSLI | GKGCMC | 2 cut(s) | 1844, 3909 |
| BstSNI | TACGTA | 1 cut(s) | 3053 |
| BstUI | CGCG | 3 cut(s) | 20, 293, 424 |
| BstV2I | GAAGAC | 1 cut(s) | 1500 |
| BstX2I | RGATCY | 3 cut(s) | 104, 981, 1795 |
| BstYI | RGATCY | 3 cut(s) | 104, 981, 1795 |
| BstZ17I | GTATAC | 1 cut(s) | 567 |
| BtgI | CCRYGG | 5 cut(s) | 396, 422, 1030, 1300, 1515 |
| BtgZI | GCGATG | 1 cut(s) | 3326 |
| BtrI | CACGTC | 1 cut(s) | 1637 |
| BtsCI | GGATG | 9 cut(s) | 637, 1506, 1722, 1742, 1978, 2095, 2407, 2497, 3397 |
| BtsI | GCAGTG | 3 cut(s) | 1256, 2197, 2947 |
| BtsIMutI | CAGTG | 9 cut(s) | 543, 1182, 1256, 1803, 2010, 2197, 2876, 2947, 3076 |
| BveI | ACCTGC | 1 cut(s) | 3958 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1691 |
| CciI | TCATGA | 1 cut(s) | 3889 |
| CfoI | GCGC | 2 cut(s) | 196, 293 |
| Cfr10I | RCCGGY | 2 cut(s) | 98, 354 |
| Cfr13I | GGNCC | 7 cut(s) | 30, 1609, 1840, 1841, 2116, 3158, 3557 |
| Cfr42I | CCGCGG | 1 cut(s) | 425 |
| CseI | GACGC | 1 cut(s) | 1115 |
| Csp6I | GTAC | 8 cut(s) | 897, 1589, 1875, 2080, 3050, 3355, 3480, 3927 |
| CviQI | GTAC | 8 cut(s) | 897, 1589, 1875, 2080, 3050, 3355, 3480, 3927 |
| DpnI | GATC | 7 cut(s) | 13, 106, 654, 983, 1011, 1797, 2736 |
| DpnII | GATC | 7 cut(s) | 11, 104, 652, 981, 1009, 1795, 2734 |
| DraI | TTTAAA | 2 cut(s) | 1324, 1449 |
| DraIII | CACNNNGTG | 2 cut(s) | 1640, 3904 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2887 |
| DriI | GACNNNNNGTC | 2 cut(s) | 2562, 2794 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2887 |
| EaeI | YGGCCR | 6 cut(s) | 184, 210, 2289, 2388, 3130, 3420 |
| Eam1104I | CTCTTC | 3 cut(s) | 242, 2011, 2741 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 2562, 2794 |
| EarI | CTCTTC | 3 cut(s) | 242, 2011, 2741 |
| EciI | GGCGGA | 3 cut(s) | 22, 117, 373 |
| Ecl136II | GAGCTC | 3 cut(s) | 2839, 3147, 3457 |
| Eco105I | TACGTA | 1 cut(s) | 3053 |
| Eco130I | CCWWGG | 6 cut(s) | 377, 396, 1030, 1300, 1515, 1886 |
| Eco24I | GRGCYC | 4 cut(s) | 1844, 2841, 3149, 3459 |
| Eco31I | GGTCTC | 1 cut(s) | 2743 |
| Eco32I | GATATC | 2 cut(s) | 1095, 2074 |
| Eco47I | GGWCC | 3 cut(s) | 30, 2116, 3158 |
| Eco53kI | GAGCTC | 3 cut(s) | 2839, 3147, 3457 |
| Eco57I | CTGAAG | 6 cut(s) | 1017, 1193, 2765, 2993, 3249, 3486 |
| Eco88I | CYCGRG | 3 cut(s) | 1943, 2106, 3090 |
| EcoICRI | GAGCTC | 3 cut(s) | 2839, 3147, 3457 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3788 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1609, 2116 |
| EcoRI | GAATTC | 1 cut(s) | 2176 |
| EcoRII | CCWGG | 7 cut(s) | 207, 1611, 1972, 2311, 2434, 3160, 3771 |
| EcoRV | GATATC | 2 cut(s) | 1095, 2074 |
| EcoT14I | CCWWGG | 6 cut(s) | 377, 396, 1030, 1300, 1515, 1886 |
| EcoT22I | ATGCAT | 2 cut(s) | 3250, 3497 |
| EcoT38I | GRGCYC | 4 cut(s) | 1844, 2841, 3149, 3459 |
| ErhI | CCWWGG | 6 cut(s) | 377, 396, 1030, 1300, 1515, 1886 |
| FaqI | GGGAC | 7 cut(s) | 266, 760, 2021, 2140, 2550, 2556, 3310 |
| FauI | CCCGC | 2 cut(s) | 338, 2106 |
| FauNDI | CATATG | 3 cut(s) | 26, 1790, 2084 |
| FblI | GTMKAC | 4 cut(s) | 566, 1086, 1277, 3695 |
| FokI | GGATG | 9 cut(s) | 644, 1513, 1729, 1749, 1965, 2102, 2394, 2504, 3384 |
| FriOI | GRGCYC | 4 cut(s) | 1844, 2841, 3149, 3459 |
| FspBI | CTAG | 8 cut(s) | 1013, 1160, 1569, 2964, 3360, 3389, 3785, 3902 |
| GlaI | GCGC | 2 cut(s) | 195, 292 |
| GsaI | CCCAGC | 3 cut(s) | 1871, 1986, 2572 |
| GsuI | CTGGAG | 3 cut(s) | 265, 2863, 3183 |
| HapII | CCGG | 3 cut(s) | 99, 355, 1440 |
| HgaI | GACGC | 1 cut(s) | 1115 |
| HhaI | GCGC | 2 cut(s) | 196, 293 |
| Hin6I | GCGC | 2 cut(s) | 194, 291 |
| HinP1I | GCGC | 2 cut(s) | 194, 291 |
| HincII | GTYRAC | 3 cut(s) | 645, 1354, 2808 |
| HindII | GTYRAC | 3 cut(s) | 645, 1354, 2808 |
| HpaII | CCGG | 3 cut(s) | 99, 355, 1440 |
| HphI | GGTGA | 8 cut(s) | 41, 49, 412, 1247, 2366, 2798, 3031, 3702 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 1641 |
| HpyAV | CCTTC | 7 cut(s) | 402, 423, 543, 2129, 2482, 3461, 3614 |
| HpyCH4IV | ACGT | 4 cut(s) | 407, 1636, 2804, 3052 |
| HpySE526I | ACGT | 4 cut(s) | 407, 1636, 2804, 3052 |
| HspAI | GCGC | 2 cut(s) | 194, 291 |
| Kpn2I | TCCGGA | 1 cut(s) | 1439 |
| KpnI | GGTACC | 1 cut(s) | 3358 |
| KroI | GCCGGC | 1 cut(s) | 354 |
| KroNI | GCCGGC | 1 cut(s) | 356 |
| KspI | CCGCGG | 1 cut(s) | 425 |
| Kzo9I | GATC | 7 cut(s) | 11, 104, 652, 981, 1009, 1795, 2734 |
| LmnI | GCTCC | 4 cut(s) | 119, 1442, 1890, 3462 |
| LweI | GCATC | 9 cut(s) | 991, 2141, 2175, 2416, 2474, 3209, 3298, 3504, 3710 |
| MaeI | CTAG | 8 cut(s) | 1013, 1160, 1569, 2964, 3360, 3389, 3785, 3902 |
| MaeII | ACGT | 4 cut(s) | 407, 1636, 2804, 3052 |
| MaeIII | GTNAC | 7 cut(s) | 55, 696, 950, 963, 2786, 2874, 3655 |
| MalI | GATC | 7 cut(s) | 13, 106, 654, 983, 1011, 1797, 2736 |
| MbiI | CCGCTC | 1 cut(s) | 2113 |
| MboI | GATC | 7 cut(s) | 11, 104, 652, 981, 1009, 1795, 2734 |
| MfeI | CAATTG | 3 cut(s) | 168, 1080, 3597 |
| MflI | RGATCY | 3 cut(s) | 104, 981, 1795 |
| MhlI | GDGCHC | 7 cut(s) | 1698, 1844, 2107, 2841, 3149, 3459, 3909 |
| MlsI | TGGCCA | 6 cut(s) | 186, 212, 2291, 2390, 3132, 3422 |
| MluNI | TGGCCA | 6 cut(s) | 186, 212, 2291, 2390, 3132, 3422 |
| MmeI | TCCRAC | 3 cut(s) | 1265, 1584, 2355 |
| Mox20I | TGGCCA | 6 cut(s) | 186, 212, 2291, 2390, 3132, 3422 |
| Mph1103I | ATGCAT | 2 cut(s) | 3250, 3497 |
| MroI | TCCGGA | 1 cut(s) | 1439 |
| MroNI | GCCGGC | 1 cut(s) | 354 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1039, 2047, 3942 |
| MscI | TGGCCA | 6 cut(s) | 186, 212, 2291, 2390, 3132, 3422 |
| MslI | CAYNNNNRTG | 5 cut(s) | 468, 1686, 1823, 1833, 2035 |
| Msp20I | TGGCCA | 6 cut(s) | 186, 212, 2291, 2390, 3132, 3422 |
| MspA1I | CMGCKG | 3 cut(s) | 285, 345, 424 |
| MspI | CCGG | 3 cut(s) | 99, 355, 1440 |
| MspR9I | CCNGG | 7 cut(s) | 209, 1613, 1974, 2313, 2436, 3162, 3773 |
| MunI | CAATTG | 3 cut(s) | 168, 1080, 3597 |
| Mva1269I | GAATGC | 4 cut(s) | 664, 2602, 2830, 3497 |
| MvaI | CCWGG | 7 cut(s) | 209, 1613, 1974, 2313, 2436, 3162, 3773 |
| MvnI | CGCG | 3 cut(s) | 20, 293, 424 |
| NaeI | GCCGGC | 1 cut(s) | 356 |
| NcoI | CCATGG | 4 cut(s) | 396, 1030, 1300, 1515 |
| NdeI | CATATG | 3 cut(s) | 26, 1790, 2084 |
| NdeII | GATC | 7 cut(s) | 11, 104, 652, 981, 1009, 1795, 2734 |
| NgoMIV | GCCGGC | 1 cut(s) | 354 |
| NlaIV | GGNNCC | 8 cut(s) | 106, 115, 131, 723, 1842, 2117, 2310, 3356 |
| NmuCI | GTSAC | 4 cut(s) | 55, 963, 2786, 2874 |
| NsiI | ATGCAT | 2 cut(s) | 3250, 3497 |
| NspV | TTCGAA | 1 cut(s) | 416 |
| PaeI | GCATGC | 3 cut(s) | 322, 2034, 2924 |
| PaeR7I | CTCGAG | 3 cut(s) | 1943, 2106, 3090 |
| PagI | TCATGA | 1 cut(s) | 3889 |
| PciI | ACATGT | 3 cut(s) | 1280, 3046, 3175 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 413, 488, 933, 1879 |
| PctI | GAATGC | 4 cut(s) | 664, 2602, 2830, 3497 |
| PdiI | GCCGGC | 1 cut(s) | 356 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1039, 2047, 3942 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1737, 1837 |
| PfoI | TCCNGGA | 2 cut(s) | 1972, 3160 |
| Ppu21I | YACGTR | 1 cut(s) | 3053 |
| PpuMI | RGGWCCY | 1 cut(s) | 2116 |
| PscI | ACATGT | 3 cut(s) | 1280, 3046, 3175 |
| PsiI | TTATAA | 1 cut(s) | 2729 |
| Psp124BI | GAGCTC | 3 cut(s) | 2841, 3149, 3459 |
| Psp5II | RGGWCCY | 1 cut(s) | 2116 |
| Psp6I | CCWGG | 7 cut(s) | 207, 1611, 1972, 2311, 2434, 3160, 3771 |
| PspFI | CCCAGC | 3 cut(s) | 1867, 1982, 2568 |
| PspGI | CCWGG | 7 cut(s) | 207, 1611, 1972, 2311, 2434, 3160, 3771 |
| PspN4I | GGNNCC | 8 cut(s) | 106, 115, 131, 723, 1842, 2117, 2310, 3356 |
| PspOMI | GGGCCC | 1 cut(s) | 1840 |
| PspPI | GGNCC | 7 cut(s) | 30, 1609, 1840, 1841, 2116, 3158, 3557 |
| PspPPI | RGGWCCY | 1 cut(s) | 2116 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2047, 2079 |
| PstI | CTGCAG | 1 cut(s) | 3451 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1691 |
| PsuI | RGATCY | 3 cut(s) | 104, 981, 1795 |
| PvuII | CAGCTG | 1 cut(s) | 285 |
| RsaI | GTAC | 8 cut(s) | 898, 1590, 1876, 2081, 3051, 3356, 3481, 3928 |
| RsaNI | GTAC | 8 cut(s) | 897, 1589, 1875, 2080, 3050, 3355, 3480, 3927 |
| RseI | CAYNNNNRTG | 5 cut(s) | 468, 1686, 1823, 1833, 2035 |
| SacI | GAGCTC | 3 cut(s) | 2841, 3149, 3459 |
| SacII | CCGCGG | 1 cut(s) | 425 |
| Sau3AI | GATC | 7 cut(s) | 11, 104, 652, 981, 1009, 1795, 2734 |
| Sau96I | GGNCC | 7 cut(s) | 30, 1609, 1840, 1841, 2116, 3158, 3557 |
| ScrFI | CCNGG | 7 cut(s) | 209, 1613, 1974, 2313, 2436, 3162, 3773 |
| SduI | GDGCHC | 7 cut(s) | 1698, 1844, 2107, 2841, 3149, 3459, 3909 |
| SfaNI | GCATC | 9 cut(s) | 991, 2141, 2175, 2416, 2474, 3209, 3298, 3504, 3710 |
| SfcI | CTRYAG | 3 cut(s) | 669, 2580, 3447 |
| Sfr274I | CTCGAG | 3 cut(s) | 1943, 2106, 3090 |
| Sfr303I | CCGCGG | 1 cut(s) | 425 |
| SfuI | TTCGAA | 1 cut(s) | 416 |
| SgrAI | CRCCGGYG | 1 cut(s) | 98 |
| SgrBI | CCGCGG | 1 cut(s) | 425 |
| SinI | GGWCC | 3 cut(s) | 30, 2116, 3158 |
| SlaI | CTCGAG | 3 cut(s) | 1943, 2106, 3090 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 468, 1686, 1823, 1833, 2035 |
| SmlI | CTYRAG | 4 cut(s) | 1943, 2106, 2834, 3090 |
| SmoI | CTYRAG | 4 cut(s) | 1943, 2106, 2834, 3090 |
| SnaBI | TACGTA | 1 cut(s) | 3053 |
| SphI | GCATGC | 3 cut(s) | 322, 2034, 2924 |
| SspMI | CTAG | 8 cut(s) | 1013, 1160, 1569, 2964, 3360, 3389, 3785, 3902 |
| SstI | GAGCTC | 3 cut(s) | 2841, 3149, 3459 |
| StyD4I | CCNGG | 7 cut(s) | 207, 1611, 1972, 2311, 2434, 3160, 3771 |
| StyI | CCWWGG | 6 cut(s) | 377, 396, 1030, 1300, 1515, 1886 |
| TaiI | ACGT | 4 cut(s) | 410, 1639, 2807, 3055 |
| TaqII | GACCGA | 1 cut(s) | 662 |
| TatI | WGTACW | 2 cut(s) | 2079, 3479 |
| TauI | GCSGC | 6 cut(s) | 65, 68, 291, 376, 2403, 3001 |
| TscAI | CASTG | 9 cut(s) | 550, 1182, 1256, 1810, 2017, 2197, 2883, 2947, 3083 |
| TseFI | GTSAC | 4 cut(s) | 55, 963, 2786, 2874 |
| Tsp45I | GTSAC | 4 cut(s) | 55, 963, 2786, 2874 |
| TspGWI | ACGGA | 1 cut(s) | 4 |
| TspRI | CASTG | 9 cut(s) | 550, 1182, 1256, 1810, 2017, 2197, 2883, 2947, 3083 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1737, 1837 |
| VneI | GTGCAC | 1 cut(s) | 3905 |
| VpaK11BI | GGWCC | 3 cut(s) | 30, 2116, 3158 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3788 |
| XapI | RAATTY | 8 cut(s) | 1307, 1366, 1965, 2176, 2982, 3181, 3583, 3862 |
| XbaI | TCTAGA | 1 cut(s) | 1012 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 205, 544, 1028 |
| XhoI | CTCGAG | 3 cut(s) | 1943, 2106, 3090 |
| XmiI | GTMKAC | 4 cut(s) | 566, 1086, 1277, 3695 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1039, 2047, 3942 |
| XspI | CTAG | 8 cut(s) | 1013, 1160, 1569, 2964, 3360, 3389, 3785, 3902 |
| Zsp2I | ATGCAT | 2 cut(s) | 3250, 3497 |