Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006809

Physical Location & Seq

Genomic Coordinates Reverse (-)

53617153 .. 53625041

Gene Structure 7889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTTGACCATTTCTGTCAAGGCATCAGCATGAATTCCATTTCTGGCAGTGCCTTGAATGGAAATACCTCGGTTTCTTCATTACTTCTTCCAGTAATTGAAGATGGGGCTTCTACGCACTCTCATTTCAATAGTTCGGACAAATTGGCCACTTCATCAAATGTAGTGCCTGGTAATACTGCTGAGTCCAACACTTCCAGAGTCAGTAAAGGTGATTCTGAAAAATTATTTTCAGCCCCTCAAATGGCCATTCAGAGCCGCAAGCATCCAATCACATGCTCTTGCCCTTTCCCTGGAATTGCTGCTCTCAATTTTGACCTTGCATCGTTAGTGTTTCCTTATCAGAAGGATGACCTTATACCAAATAGCCGTGATAAGAAAGAGGATAATAGTGGCAAGGGACAGGGATTTGAGACACCAAGTCCCCAGCACAAGCCTGTAGATAATGGTTCTGGTGTGCATTCGACCTCAAATGATACTGTTCAAGAGATTGAATGGATTAGAACACTTGAAGAATGTTTACTTCGATTTAGCTTGGGGTTCTTGCACTTGTGGAATGTAGATTCTGAGCTTGATAACTTGCTTATAACTGATCTAAATTTGAAGAGACCAGACAATTTTTTCTCGCTTCTGGTTTTCAAGGTGACAAAGGGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

219

Amino Acids

23.91

Weight (kDa)

5.43

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11270 AT4G11270
fragaria_vesca	FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240
malus_domestica	MD06G1091700.v1.1
prunus_persica	Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1
pyrus_communis	pycom06g08780
rosa_chinensis	RchiOBHm_Chr7g0196531
rosa_laevigata	RLG00000004007
rosa_multiflora	Rmu_co8334943.1_g000001 Rmu_sc0013350.1_g000008 Rmu_sc0017231.1_g000007
rosa_roxburghii	Rroxscaffold_3G00259220
rosa_rugosa	Rorug07G0034400
rosa_samantha	Rh7AG158600 Rh7BG160600 Rh7CG167000 Rh7DG159800
rosa_wichuraiana	Rw7G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AciI	CCGC	1 cut(s)	259
AcoI	YGGCCR	2 cut(s)	147, 246
AcsI	RAATTY	2 cut(s)	34, 598
AfiI	CCNNNNNNNGG	2 cut(s)	244, 293
AgsI	TTSAA	8 cut(s)	58, 101, 130, 485, 494, 512, 604, 640
AhdI	GACNNNNNGTC	2 cut(s)	420, 651
AjnI	CCWGG	2 cut(s)	169, 292
AluBI	AGCT	2 cut(s)	534, 571
AluI	AGCT	2 cut(s)	534, 571
Alw26I	GTCTC	2 cut(s)	407, 601
AoxI	GGCC	2 cut(s)	147, 246
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	34, 598
AsuHPI	GGTGA	2 cut(s)	224, 655
BalI	TGGCCA	2 cut(s)	149, 248
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	2 cut(s)	171, 294
BcoDI	GTCTC	2 cut(s)	407, 601
BfmI	CTRYAG	1 cut(s)	438
BisI	GCNGC	2 cut(s)	259, 303
BlsI	GCNGC	2 cut(s)	260, 304
Bme1390I	CCNGG	2 cut(s)	171, 294
BmeRI	GACNNNNNGTC	2 cut(s)	420, 651
BmrFI	CCNGG	2 cut(s)	171, 294
BmsI	GCATC	3 cut(s)	33, 274, 332
BsaI	GGTCTC	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	69, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 293
Bse1I	ACTGG	1 cut(s)	92
BseBI	CCWGG	2 cut(s)	171, 294
BseDI	CCNNGG	2 cut(s)	69, 292
BseGI	GGATG	2 cut(s)	265, 355
BseLI	CCNNNNNNNGG	2 cut(s)	244, 293
BseMII	CTCAG	2 cut(s)	174, 558
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	426
BshFI	GGCC	2 cut(s)	149, 248
BslFI	GGGAC	2 cut(s)	408, 414
BslI	CCNNNNNNNGG	2 cut(s)	244, 293
BsmAI	GTCTC	2 cut(s)	407, 601
BsmFI	GGGAC	2 cut(s)	408, 414
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	2 cut(s)	149, 248
Bso31I	GGTCTC	1 cut(s)	601
Bsp143I	GATC	1 cut(s)	592
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	2 cut(s)	149, 248
BspCNI	CTCAG	2 cut(s)	175, 559
BspTNI	GGTCTC	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	69, 292
BssMI	GATC	1 cut(s)	592
Bst2UI	CCWGG	2 cut(s)	171, 294
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	183, 567
BstF5I	GGATG	2 cut(s)	265, 355
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	2 cut(s)	407, 601
BstMBI	GATC	1 cut(s)	592
BstNI	CCWGG	2 cut(s)	171, 294
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	169, 292
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	149, 248
BtsCI	GGATG	2 cut(s)	265, 355
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	263
CviAII	CATG	2 cut(s)	31, 276
CviJI	RGCY	9 cut(s)	110, 149, 236, 248, 258, 369, 436, 534, 571
CviKI_1	RGCY	9 cut(s)	110, 149, 236, 248, 258, 369, 436, 534, 571
DdeI	CTNAG	2 cut(s)	183, 567
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
DriI	GACNNNNNGTC	2 cut(s)	420, 651
EaeI	YGGCCR	2 cut(s)	147, 246
Eam1104I	CTCTTC	1 cut(s)	599
Eam1105I	GACNNNNNGTC	2 cut(s)	420, 651
EarI	CTCTTC	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	601
EcoRI	GAATTC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	169, 292
FaeI	CATG	2 cut(s)	34, 279
FaiI	YATR	4 cut(s)	32, 277, 359, 587
FaqI	GGGAC	2 cut(s)	408, 414
FatI	CATG	2 cut(s)	30, 275
Fnu4HI	GCNGC	2 cut(s)	259, 303
FokI	GGATG	2 cut(s)	252, 362
Fsp4HI	GCNGC	2 cut(s)	259, 303
GluI	GCNGC	2 cut(s)	259, 303
GsaI	CCCAGC	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	149, 248
Hin1II	CATG	2 cut(s)	34, 279
HinfI	GANTC	4 cut(s)	185, 201, 215, 563
HphI	GGTGA	2 cut(s)	224, 655
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	5 cut(s)	139, 220, 255, 345, 568
Hpy188III	TCNNGA	2 cut(s)	198, 485
Hpy8I	GTNNAC	1 cut(s)	521
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4V	TGCA	3 cut(s)	323, 460, 547
HpyF3I	CTNAG	2 cut(s)	183, 567
Hsp92II	CATG	2 cut(s)	34, 279
Kzo9I	GATC	1 cut(s)	592
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	3 cut(s)	33, 274, 332
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	5 cut(s)	69, 80, 113, 524, 616
MlsI	TGGCCA	2 cut(s)	149, 248
MluCI	AATT	8 cut(s)	34, 96, 143, 224, 297, 310, 598, 616
MluNI	TGGCCA	2 cut(s)	149, 248
MlyI	GAGTC	2 cut(s)	194, 210
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	79, 249, 376, 478
Mox20I	TGGCCA	2 cut(s)	149, 248
MscI	TGGCCA	2 cut(s)	149, 248
MslI	CAYNNNNRTG	1 cut(s)	29
Msp20I	TGGCCA	2 cut(s)	149, 248
MspR9I	CCNGG	2 cut(s)	171, 294
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	2 cut(s)	171, 294
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	2 cut(s)	34, 279
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	1 cut(s)	279
PctI	GAATGC	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	215, 563
PkrI	GCNGC	2 cut(s)	260, 304
PleI	GAGTC	2 cut(s)	193, 209
PpsI	GAGTC	2 cut(s)	193, 209
PsiI	TTATAA	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	169, 292
PspFI	CCCAGC	1 cut(s)	426
PspGI	CCWGG	2 cut(s)	169, 292
RseI	CAYNNNNRTG	1 cut(s)	29
SatI	GCNGC	2 cut(s)	259, 303
Sau3AI	GATC	1 cut(s)	592
SchI	GAGTC	2 cut(s)	194, 210
ScrFI	CCNGG	2 cut(s)	171, 294
SetI	ASST	8 cut(s)	71, 214, 321, 357, 470, 536, 573, 645
SfaNI	GCATC	3 cut(s)	33, 274, 332
SfcI	CTRYAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	8 cut(s)	34, 96, 143, 224, 297, 310, 598, 616
SsiI	CCGC	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	169, 292
TaaI	ACNGT	1 cut(s)	481
TaqI	TCGA	2 cut(s)	464, 526
TasI	AATT	8 cut(s)	34, 96, 143, 224, 297, 310, 598, 616
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	215, 563
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	3 cut(s)	47, 69, 144
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	2 cut(s)	34, 598
XceI	RCATGY	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.