Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8334943.1

Orthogroup ID

OG0006809

Physical Location & Seq

Genomic Coordinates Forward (+)

204 .. 988

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8334943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgaagtgccgatccgtcgcgtgcatatggtccgccacgcctccctctcaccgagtcaccgccgccgccgtcctccaccaccccccgactctctacaccggcggatccgatggctccctcatctggtggaacctccactcctctcattccacctcggaacttgtgccaattgctatgttgtgtggccatgctgcgcccatagccgacctggccatctgcgacccccttgcggtttcggagggtgagaagagggactctttgagcaatgctgagctgaactccagctgcggcgcgttgataagtgcttgtgttgatggcatgctgtgtgtgtggagtagaagcagcgggcattgccggcggaggaggaagttgccgccttgggtgggcagtccttccatggttaggacgttgccttcgaatccgcggtatatgtgtgttgcgtgctgttttgttgatactgtccatttgaatgaccatcattcggttgagtcgagtgaggttttagttgatagggaggctcagcataagaagccttccaaatgcactgtggttgttgttgattcgtatactcttagcattgtgcaaaccatttttcatggaaacttgtccatcgggtcattgaagtttatggatgtagtttcgttgaccgaggatcaggagaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

221

Amino Acids

24.01

Weight (kDa)

6.84

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11270 AT4G11270
fragaria_vesca	FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240
malus_domestica	MD06G1091700.v1.1
prunus_persica	Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1
pyrus_communis	pycom06g08780
rosa_chinensis	RchiOBHm_Chr7g0196531
rosa_laevigata	RLG00000004007
rosa_multiflora	Rmu_co8334943.1_g000001 Rmu_sc0013350.1_g000008 Rmu_sc0017231.1_g000007
rosa_roxburghii	Rroxscaffold_3G00259220
rosa_rugosa	Rorug07G0034400
rosa_samantha	Rh7AG158600 Rh7BG160600 Rh7CG167000 Rh7DG159800
rosa_wichuraiana	Rw7G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	566
AccII	CGCG	3 cut(s)	20, 293, 424
AclWI	GGATC	4 cut(s)	6, 99, 112, 660
AcoI	YGGCCR	2 cut(s)	184, 210
AfiI	CCNNNNNNNGG	5 cut(s)	123, 229, 383, 402, 481
AgsI	TTSAA	2 cut(s)	469, 622
AjnI	CCWGG	1 cut(s)	207
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	2 cut(s)	274, 285
AluI	AGCT	2 cut(s)	274, 285
AlwI	GGATC	4 cut(s)	6, 99, 112, 660
AoxI	GGCC	2 cut(s)	184, 210
ApeKI	GCWGC	3 cut(s)	191, 285, 342
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
AspLEI	GCGC	2 cut(s)	196, 293
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	3 cut(s)	41, 49, 254
AsuII	TTCGAA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	30
BalI	TGGCCA	2 cut(s)	186, 212
BamHI	GGATCC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	178, 272, 354
BccI	CCATC	5 cut(s)	104, 221, 308, 483, 617
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	209
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	7 cut(s)	63, 66, 192, 286, 289, 343, 374
BlpI	GCTNAGC	2 cut(s)	270, 519
BlsI	GCNGC	7 cut(s)	64, 67, 193, 287, 290, 344, 375
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	3 cut(s)	106, 115, 131
BmrFI	CCNGG	1 cut(s)	209
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpmI	CTGGAG	1 cut(s)	265
Bpu1102I	GCTNAGC	2 cut(s)	270, 519
Bpu14I	TTCGAA	1 cut(s)	416
BsaJI	CCNNGG	5 cut(s)	153, 377, 396, 422, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 229, 383, 402, 481
Bse118I	RCCGGY	2 cut(s)	98, 354
Bse3DI	GCAATG	2 cut(s)	271, 349
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	5 cut(s)	153, 377, 396, 422, 648
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	5 cut(s)	123, 229, 383, 402, 481
BseMI	GCAATG	2 cut(s)	271, 349
BseMII	CTCAG	2 cut(s)	261, 533
BseRI	GAGGAG	2 cut(s)	130, 376
BseXI	GCAGC	3 cut(s)	178, 272, 354
Bsh1236I	CGCG	3 cut(s)	20, 293, 424
BshFI	GGCC	2 cut(s)	186, 212
BsiSI	CCGG	2 cut(s)	99, 355
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	5 cut(s)	123, 229, 383, 402, 481
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	186, 212
Bsp119I	TTCGAA	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	11, 104, 652
Bsp1720I	GCTNAGC	2 cut(s)	270, 519
Bsp19I	CCATGG	1 cut(s)	396
BspANI	GGCC	2 cut(s)	186, 212
BspCNI	CTCAG	2 cut(s)	262, 532
BspFNI	CGCG	3 cut(s)	20, 293, 424
BspLI	GGNNCC	3 cut(s)	106, 115, 131
BspPI	GGATC	4 cut(s)	6, 99, 112, 660
BspT104I	TTCGAA	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	271, 349
BsrFI	RCCGGY	2 cut(s)	98, 354
BssAI	RCCGGY	2 cut(s)	98, 354
BssECI	CCNNGG	5 cut(s)	153, 377, 396, 422, 648
BssMI	GATC	3 cut(s)	11, 104, 652
BssNAI	GTATAC	1 cut(s)	567
BssT1I	CCWWGG	2 cut(s)	377, 396
Bst1107I	GTATAC	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	460, 547
Bst6I	CTCTTC	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	5 cut(s)	22, 320, 347, 356, 442
BstDEI	CTNAG	3 cut(s)	270, 519, 572
BstDSI	CCRYGG	2 cut(s)	396, 422
BstF5I	GGATG	1 cut(s)	637
BstFNI	CGCG	3 cut(s)	20, 293, 424
BstHHI	GCGC	2 cut(s)	196, 293
BstKTI	GATC	3 cut(s)	14, 107, 655
BstMBI	GATC	3 cut(s)	11, 104, 652
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 209, 351, 355, 529
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	207
BstUI	CGCG	3 cut(s)	20, 293, 424
BstV1I	GCAGC	3 cut(s)	178, 272, 354
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	567
BsuRI	GGCC	2 cut(s)	186, 212
BtgI	CCRYGG	2 cut(s)	396, 422
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	5 cut(s)	22, 320, 347, 356, 442
CfoI	GCGC	2 cut(s)	196, 293
Cfr10I	RCCGGY	2 cut(s)	98, 354
Cfr13I	GGNCC	1 cut(s)	30
Cfr42I	CCGCGG	1 cut(s)	425
CviAII	CATG	4 cut(s)	188, 319, 397, 596
CviJI	RGCY	8 cut(s)	114, 186, 203, 212, 274, 285, 518, 532
CviKI_1	RGCY	8 cut(s)	114, 186, 203, 212, 274, 285, 518, 532
DdeI	CTNAG	3 cut(s)	270, 519, 572
DpnI	GATC	3 cut(s)	13, 106, 654
DpnII	GATC	3 cut(s)	11, 104, 652
EaeI	YGGCCR	2 cut(s)	184, 210
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	3 cut(s)	22, 117, 373
Eco130I	CCWWGG	2 cut(s)	377, 396
Eco47I	GGWCC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	377, 396
ErhI	CCWWGG	2 cut(s)	377, 396
FaeI	CATG	4 cut(s)	191, 322, 400, 599
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	4 cut(s)	187, 318, 396, 595
FauI	CCCGC	1 cut(s)	338
FauNDI	CATATG	1 cut(s)	26
FblI	GTMKAC	1 cut(s)	566
Fnu4HI	GCNGC	7 cut(s)	63, 66, 192, 286, 289, 343, 374
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	7 cut(s)	63, 66, 192, 286, 289, 343, 374
GlaI	GCGC	2 cut(s)	195, 292
GluI	GCNGC	7 cut(s)	63, 66, 192, 286, 289, 343, 374
GsuI	CTGGAG	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	186, 212
HapII	CCGG	2 cut(s)	99, 355
HhaI	GCGC	2 cut(s)	196, 293
Hin1II	CATG	4 cut(s)	191, 322, 400, 599
Hin6I	GCGC	2 cut(s)	194, 291
HinP1I	GCGC	2 cut(s)	194, 291
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HinfI	GANTC	6 cut(s)	54, 88, 254, 418, 488, 560
HpaII	CCGG	2 cut(s)	99, 355
HphI	GGTGA	3 cut(s)	41, 49, 254
Hpy166II	GTNNAC	2 cut(s)	567, 645
Hpy188I	TCNGA	3 cut(s)	109, 157, 238
Hpy188III	TCNNGA	1 cut(s)	656
Hpy8I	GTNNAC	2 cut(s)	567, 645
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	402, 423, 543
HpyCH4III	ACNGT	2 cut(s)	460, 547
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	3 cut(s)	24, 543, 583
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 209, 351, 355, 529
HpyF3I	CTNAG	3 cut(s)	270, 519, 572
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	4 cut(s)	191, 322, 400, 599
HspAI	GCGC	2 cut(s)	194, 291
KroI	GCCGGC	1 cut(s)	354
KroNI	GCCGGC	1 cut(s)	356
KspI	CCGCGG	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	11, 104, 652
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	7 cut(s)	109, 112, 194, 221, 295, 368, 641
Lsp1109I	GCAGC	3 cut(s)	178, 272, 354
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	13, 106, 654
MboI	GATC	3 cut(s)	11, 104, 652
MboII	GAAGA	1 cut(s)	259
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	1 cut(s)	104
MlsI	TGGCCA	2 cut(s)	186, 212
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	2 cut(s)	186, 212
MlyI	GAGTC	4 cut(s)	63, 82, 248, 497
Mox20I	TGGCCA	2 cut(s)	186, 212
MroNI	GCCGGC	1 cut(s)	354
MscI	TGGCCA	2 cut(s)	186, 212
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	2 cut(s)	186, 212
MspA1I	CMGCKG	3 cut(s)	285, 345, 424
MspI	CCGG	2 cut(s)	99, 355
MspR9I	CCNGG	1 cut(s)	209
MunI	CAATTG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	3 cut(s)	20, 293, 424
MwoI	GCNNNNNNNGC	5 cut(s)	200, 209, 351, 355, 529
NaeI	GCCGGC	1 cut(s)	356
NcoI	CCATGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	26
NdeII	GATC	3 cut(s)	11, 104, 652
NgoMIV	GCCGGC	1 cut(s)	354
NlaIII	CATG	4 cut(s)	191, 322, 400, 599
NlaIV	GGNNCC	3 cut(s)	106, 115, 131
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	416
PaeI	GCATGC	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	2 cut(s)	413, 488
PdiI	GCCGGC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	418, 560
PkrI	GCNGC	7 cut(s)	64, 67, 193, 287, 290, 344, 375
PleI	GAGTC	4 cut(s)	62, 82, 248, 496
PpsI	GAGTC	4 cut(s)	62, 82, 248, 496
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	106, 115, 131
PspPI	GGNCC	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	468
SacII	CCGCGG	1 cut(s)	425
SatI	GCNGC	7 cut(s)	63, 66, 192, 286, 289, 343, 374
Sau3AI	GATC	3 cut(s)	11, 104, 652
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	4 cut(s)	63, 82, 248, 497
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	7 cut(s)	135, 155, 210, 276, 287, 410, 501
Sfr303I	CCGCGG	1 cut(s)	425
SfuI	TTCGAA	1 cut(s)	416
SgrAI	CRCCGGYG	1 cut(s)	98
SgrBI	CCGCGG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	468
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	2 cut(s)	377, 396
TaaI	ACNGT	2 cut(s)	460, 547
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	2 cut(s)	416, 491
TaqII	GACCGA	1 cut(s)	662
TasI	AATT	1 cut(s)	168
TauI	GCSGC	4 cut(s)	65, 68, 291, 376
TfiI	GAWTC	2 cut(s)	418, 560
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	191, 285, 342
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	17, 584
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	30
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	2 cut(s)	205, 544
XmiI	GTMKAC	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.