WD repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G11270 AT4G11270 |
| fragaria_vesca | FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 |
| malus_domestica | MD06G1091700.v1.1 |
| prunus_persica | Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 |
| pyrus_communis | pycom06g08780 |
| rosa_chinensis | RchiOBHm_Chr7g0196531 |
| rosa_laevigata | RLG00000004007 |
| rosa_multiflora | Rmu_co8334943.1_g000001 Rmu_sc0013350.1_g000008 Rmu_sc0017231.1_g000007 |
| rosa_roxburghii | Rroxscaffold_3G00259220 |
| rosa_rugosa | Rorug07G0034400 |
| rosa_samantha | Rh7AG158600 Rh7BG160600 Rh7CG167000 Rh7DG159800 |
| rosa_wichuraiana | Rw7G013860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2720 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2878 |
| Acc65I | GGTACC | 1 cut(s) | 3345 |
| AccB1I | GGYRCC | 2 cut(s) | 2299, 3345 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1728, 1828 |
| AccBSI | CCGCTC | 1 cut(s) | 2104 |
| AccI | GTMKAC | 4 cut(s) | 566, 1077, 1268, 3686 |
| AccII | CGCG | 2 cut(s) | 293, 424 |
| AccIII | TCCGGA | 1 cut(s) | 1430 |
| AclWI | GGATC | 6 cut(s) | 6, 99, 112, 660, 989, 1794 |
| AcoI | YGGCCR | 6 cut(s) | 184, 210, 2280, 2379, 3121, 3411 |
| AcsI | RAATTY | 8 cut(s) | 1298, 1357, 1956, 2167, 2973, 3172, 3574, 3854 |
| AcuI | CTGAAG | 5 cut(s) | 1017, 2756, 2984, 3240, 3477 |
| AfaI | GTAC | 8 cut(s) | 898, 1581, 1867, 2072, 3042, 3347, 3472, 3648 |
| AflIII | ACRYGT | 3 cut(s) | 1271, 3037, 3166 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 1166, 2553, 2785 |
| AjiI | CACGTC | 1 cut(s) | 1628 |
| AjnI | CCWGG | 7 cut(s) | 207, 1602, 1963, 2302, 2425, 3151, 3649 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1836, 1868 |
| AleI | CACNNNNGTG | 1 cut(s) | 1677 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 122, 154 |
| Alw21I | GWGCWC | 5 cut(s) | 1689, 2098, 2832, 3140, 3450 |
| Alw26I | GTCTC | 7 cut(s) | 1153, 1931, 2540, 2734, 2886, 3152, 3594 |
| AlwI | GGATC | 6 cut(s) | 6, 99, 112, 660, 989, 1794 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1682 |
| Ama87I | CYCGRG | 3 cut(s) | 1934, 2097, 3081 |
| Aor13HI | TCCGGA | 1 cut(s) | 1430 |
| ApaI | GGGCCC | 1 cut(s) | 1835 |
| ApoI | RAATTY | 8 cut(s) | 1298, 1357, 1956, 2167, 2973, 3172, 3574, 3854 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 397, 429 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1030, 2038 |
| Asp718I | GGTACC | 1 cut(s) | 3345 |
| AspLEI | GCGC | 2 cut(s) | 196, 293 |
| AspS9I | GGNCC | 7 cut(s) | 30, 1600, 1831, 1832, 2107, 3149, 3548 |
| AsuHPI | GGTGA | 8 cut(s) | 41, 49, 254, 1238, 2357, 2789, 3022, 3693 |
| AsuII | TTCGAA | 1 cut(s) | 416 |
| AvaI | CYCGRG | 3 cut(s) | 1934, 2097, 3081 |
| AvaII | GGWCC | 3 cut(s) | 30, 2107, 3149 |
| BaeGI | GKGCMC | 2 cut(s) | 1674, 1835 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3337, 3370 |
| BalI | TGGCCA | 6 cut(s) | 186, 212, 2282, 2381, 3123, 3413 |
| BamHI | GGATCC | 1 cut(s) | 104 |
| BanI | GGYRCC | 2 cut(s) | 2299, 3345 |
| BanII | GRGCYC | 4 cut(s) | 1835, 2832, 3140, 3450 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2637, 2669 |
| BbsI | GAAGAC | 2 cut(s) | 1491, 3587 |
| Bbv12I | GWGCWC | 5 cut(s) | 1689, 2098, 2832, 3140, 3450 |
| BbvCI | CCTCAGC | 1 cut(s) | 792 |
| BceAI | ACGGC | 4 cut(s) | 53, 1317, 2136, 2487 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 209, 243 |
| BciT130I | CCWGG | 7 cut(s) | 209, 1604, 1965, 2304, 2427, 3153, 3651 |
| BcoDI | GTCTC | 7 cut(s) | 1153, 1931, 2540, 2734, 2886, 3152, 3594 |
| BfaI | CTAG | 8 cut(s) | 1004, 1151, 1560, 2955, 3351, 3380, 3764, 3776 |
| BfmI | CTRYAG | 2 cut(s) | 669, 2571 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 209 |
| BglII | AGATCT | 1 cut(s) | 1000 |
| BlpI | GCTNAGC | 2 cut(s) | 270, 519 |
| Bme1390I | CCNGG | 7 cut(s) | 209, 1604, 1965, 2304, 2427, 3153, 3651 |
| Bme18I | GGWCC | 3 cut(s) | 30, 2107, 3149 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 1166, 2553, 2785 |
| BmeT110I | CYCGRG | 3 cut(s) | 1934, 2097, 3081 |
| BmgBI | CACGTC | 1 cut(s) | 1628 |
| BmgT120I | GGNCC | 7 cut(s) | 30, 1600, 1831, 1832, 2107, 3149, 3548 |
| BmiI | GGNNCC | 8 cut(s) | 106, 115, 131, 723, 1833, 2108, 2301, 3347 |
| BmrFI | CCNGG | 7 cut(s) | 209, 1604, 1965, 2304, 2427, 3153, 3651 |
| BmrI | ACTGGG | 2 cut(s) | 1806, 1829 |
| BmsI | GCATC | 8 cut(s) | 2132, 2166, 2407, 2465, 3200, 3289, 3495, 3701 |
| BmuI | ACTGGG | 2 cut(s) | 1806, 1829 |
| BpiI | GAAGAC | 2 cut(s) | 1491, 3587 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 263, 295 |
| BpmI | CTGGAG | 3 cut(s) | 265, 2854, 3174 |
| Bpu10I | CCTNAGC | 1 cut(s) | 792 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 270, 519 |
| Bpu14I | TTCGAA | 1 cut(s) | 416 |
| BpuEI | CTTGAG | 1 cut(s) | 2846 |
| BsaAI | YACGTR | 1 cut(s) | 3044 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2730 |
| BsaI | GGTCTC | 1 cut(s) | 2734 |
| BsaWI | WCCGGW | 1 cut(s) | 1430 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 122, 152, 801, 831, 1873, 1903 |
| Bse118I | RCCGGY | 2 cut(s) | 98, 354 |
| Bse3DI | GCAATG | 2 cut(s) | 271, 349 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2730 |
| BseAI | TCCGGA | 1 cut(s) | 1430 |
| BseBI | CCWGG | 7 cut(s) | 209, 1604, 1965, 2304, 2427, 3153, 3651 |
| BseJI | GATNNNNATC | 1 cut(s) | 2730 |
| BseMI | GCAATG | 2 cut(s) | 271, 349 |
| BseRI | GAGGAG | 2 cut(s) | 130, 376 |
| BseSI | GKGCMC | 2 cut(s) | 1674, 1835 |
| BseYI | CCCAGC | 3 cut(s) | 1858, 1973, 2559 |
| BsgI | GTGCAG | 1 cut(s) | 3036 |
| Bsh1236I | CGCG | 2 cut(s) | 293, 424 |
| BshNI | GGYRCC | 2 cut(s) | 2299, 3345 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1689, 2098, 2832, 3140, 3450 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1934, 2097, 3081 |
| BsiSI | CCGG | 3 cut(s) | 99, 355, 1431 |
| BslFI | GGGAC | 7 cut(s) | 266, 760, 2012, 2131, 2541, 2547, 3301 |
| BsmAI | GTCTC | 7 cut(s) | 1153, 1931, 2540, 2734, 2886, 3152, 3594 |
| BsmFI | GGGAC | 7 cut(s) | 266, 760, 2012, 2131, 2541, 2547, 3301 |
| BsmI | GAATGC | 3 cut(s) | 2593, 2821, 3488 |
| Bso31I | GGTCTC | 1 cut(s) | 2734 |
| BsoBI | CYCGRG | 3 cut(s) | 1934, 2097, 3081 |
| Bsp119I | TTCGAA | 1 cut(s) | 416 |
| Bsp120I | GGGCCC | 1 cut(s) | 1831 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1674, 1689, 1835, 2098, 2832, 3140, 3450 |
| Bsp13I | TCCGGA | 1 cut(s) | 1430 |
| Bsp1407I | TGTACA | 1 cut(s) | 2070 |
| Bsp143I | GATC | 8 cut(s) | 11, 104, 652, 981, 1000, 1786, 2449, 2725 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 270, 519 |
| Bsp19I | CCATGG | 4 cut(s) | 396, 1021, 1291, 1506 |
| BspEI | TCCGGA | 1 cut(s) | 1430 |
| BspFNI | CGCG | 2 cut(s) | 293, 424 |
| BspHI | TCATGA | 1 cut(s) | 1630 |
| BspLI | GGNNCC | 8 cut(s) | 106, 115, 131, 723, 1833, 2108, 2301, 3347 |
| BspPI | GGATC | 6 cut(s) | 6, 99, 112, 660, 989, 1794 |
| BspT104I | TTCGAA | 1 cut(s) | 416 |
| BspT107I | GGYRCC | 2 cut(s) | 2299, 3345 |
| BspTNI | GGTCTC | 1 cut(s) | 2734 |
| BsrBI | CCGCTC | 1 cut(s) | 2104 |
| BsrDI | GCAATG | 2 cut(s) | 271, 349 |
| BsrFI | RCCGGY | 2 cut(s) | 98, 354 |
| BsrGI | TGTACA | 1 cut(s) | 2070 |
| BssAI | RCCGGY | 2 cut(s) | 98, 354 |
| BssMI | GATC | 8 cut(s) | 11, 104, 652, 981, 1000, 1786, 2449, 2725 |
| BssNAI | GTATAC | 1 cut(s) | 567 |
| BssT1I | CCWWGG | 6 cut(s) | 377, 396, 1021, 1291, 1506, 1877 |
| Bst1107I | GTATAC | 1 cut(s) | 567 |
| Bst2UI | CCWGG | 7 cut(s) | 209, 1604, 1965, 2304, 2427, 3153, 3651 |
| Bst6I | CTCTTC | 3 cut(s) | 242, 2002, 2732 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1767 |
| BstAUI | TGTACA | 1 cut(s) | 2070 |
| BstBAI | YACGTR | 1 cut(s) | 3044 |
| BstBI | TTCGAA | 1 cut(s) | 416 |
| BstDSI | CCRYGG | 6 cut(s) | 15, 396, 422, 1021, 1291, 1506 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2424, 3779 |
| BstFNI | CGCG | 2 cut(s) | 293, 424 |
| BstHHI | GCGC | 2 cut(s) | 196, 293 |
| BstKTI | GATC | 8 cut(s) | 14, 107, 655, 984, 1003, 1789, 2452, 2728 |
| BstMAI | GTCTC | 7 cut(s) | 1153, 1931, 2540, 2734, 2886, 3152, 3594 |
| BstMBI | GATC | 8 cut(s) | 11, 104, 652, 981, 1000, 1786, 2449, 2725 |
| BstNI | CCWGG | 7 cut(s) | 209, 1604, 1965, 2304, 2427, 3153, 3651 |
| BstSCI | CCNGG | 7 cut(s) | 207, 1602, 1963, 2302, 2425, 3151, 3649 |
| BstSFI | CTRYAG | 2 cut(s) | 669, 2571 |
| BstSLI | GKGCMC | 2 cut(s) | 1674, 1835 |
| BstSNI | TACGTA | 1 cut(s) | 3044 |
| BstUI | CGCG | 2 cut(s) | 293, 424 |
| BstV2I | GAAGAC | 2 cut(s) | 1491, 3587 |
| BstX2I | RGATCY | 4 cut(s) | 104, 981, 1000, 1786 |
| BstYI | RGATCY | 4 cut(s) | 104, 981, 1000, 1786 |
| BstZ17I | GTATAC | 1 cut(s) | 567 |
| BtgI | CCRYGG | 6 cut(s) | 15, 396, 422, 1021, 1291, 1506 |
| BtgZI | GCGATG | 1 cut(s) | 3317 |
| BtrI | CACGTC | 1 cut(s) | 1628 |
| BtsI | GCAGTG | 3 cut(s) | 1247, 2188, 2938 |
| BtsIMutI | CAGTG | 8 cut(s) | 543, 1247, 1794, 2001, 2188, 2867, 2938, 3067 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1682 |
| CciI | TCATGA | 1 cut(s) | 1630 |
| CfoI | GCGC | 2 cut(s) | 196, 293 |
| Cfr10I | RCCGGY | 2 cut(s) | 98, 354 |
| Cfr13I | GGNCC | 7 cut(s) | 30, 1600, 1831, 1832, 2107, 3149, 3548 |
| Cfr42I | CCGCGG | 1 cut(s) | 425 |
| CseI | GACGC | 1 cut(s) | 1106 |
| Csp6I | GTAC | 8 cut(s) | 897, 1580, 1866, 2071, 3041, 3346, 3471, 3647 |
| CviQI | GTAC | 8 cut(s) | 897, 1580, 1866, 2071, 3041, 3346, 3471, 3647 |
| DpnI | GATC | 8 cut(s) | 13, 106, 654, 983, 1002, 1788, 2451, 2727 |
| DpnII | GATC | 8 cut(s) | 11, 104, 652, 981, 1000, 1786, 2449, 2725 |
| DraI | TTTAAA | 2 cut(s) | 1315, 1440 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2878 |
| DriI | GACNNNNNGTC | 3 cut(s) | 1166, 2553, 2785 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2878 |
| EaeI | YGGCCR | 6 cut(s) | 184, 210, 2280, 2379, 3121, 3411 |
| Eam1104I | CTCTTC | 3 cut(s) | 242, 2002, 2732 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 1166, 2553, 2785 |
| EarI | CTCTTC | 3 cut(s) | 242, 2002, 2732 |
| EciI | GGCGGA | 3 cut(s) | 22, 117, 373 |
| Ecl136II | GAGCTC | 3 cut(s) | 2830, 3138, 3448 |
| Eco105I | TACGTA | 1 cut(s) | 3044 |
| Eco130I | CCWWGG | 6 cut(s) | 377, 396, 1021, 1291, 1506, 1877 |
| Eco24I | GRGCYC | 4 cut(s) | 1835, 2832, 3140, 3450 |
| Eco31I | GGTCTC | 1 cut(s) | 2734 |
| Eco32I | GATATC | 2 cut(s) | 1086, 2065 |
| Eco47I | GGWCC | 3 cut(s) | 30, 2107, 3149 |
| Eco53kI | GAGCTC | 3 cut(s) | 2830, 3138, 3448 |
| Eco57I | CTGAAG | 5 cut(s) | 1017, 2756, 2984, 3240, 3477 |
| Eco88I | CYCGRG | 3 cut(s) | 1934, 2097, 3081 |
| EcoICRI | GAGCTC | 3 cut(s) | 2830, 3138, 3448 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2424, 3779 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1600, 2107 |
| EcoRI | GAATTC | 1 cut(s) | 2167 |
| EcoRII | CCWGG | 7 cut(s) | 207, 1602, 1963, 2302, 2425, 3151, 3649 |
| EcoRV | GATATC | 2 cut(s) | 1086, 2065 |
| EcoT14I | CCWWGG | 6 cut(s) | 377, 396, 1021, 1291, 1506, 1877 |
| EcoT22I | ATGCAT | 2 cut(s) | 3241, 3488 |
| EcoT38I | GRGCYC | 4 cut(s) | 1835, 2832, 3140, 3450 |
| ErhI | CCWWGG | 6 cut(s) | 377, 396, 1021, 1291, 1506, 1877 |
| FaqI | GGGAC | 7 cut(s) | 266, 760, 2012, 2131, 2541, 2547, 3301 |
| FauI | CCCGC | 2 cut(s) | 338, 2097 |
| FauNDI | CATATG | 3 cut(s) | 26, 1781, 2075 |
| FblI | GTMKAC | 4 cut(s) | 566, 1077, 1268, 3686 |
| FriOI | GRGCYC | 4 cut(s) | 1835, 2832, 3140, 3450 |
| FspBI | CTAG | 8 cut(s) | 1004, 1151, 1560, 2955, 3351, 3380, 3764, 3776 |
| GlaI | GCGC | 2 cut(s) | 195, 292 |
| GsaI | CCCAGC | 3 cut(s) | 1862, 1977, 2563 |
| GsuI | CTGGAG | 3 cut(s) | 265, 2854, 3174 |
| HapII | CCGG | 3 cut(s) | 99, 355, 1431 |
| HgaI | GACGC | 1 cut(s) | 1106 |
| HhaI | GCGC | 2 cut(s) | 196, 293 |
| Hin6I | GCGC | 2 cut(s) | 194, 291 |
| HinP1I | GCGC | 2 cut(s) | 194, 291 |
| HincII | GTYRAC | 3 cut(s) | 645, 1345, 2799 |
| HindII | GTYRAC | 3 cut(s) | 645, 1345, 2799 |
| HpaII | CCGG | 3 cut(s) | 99, 355, 1431 |
| HphI | GGTGA | 8 cut(s) | 41, 49, 254, 1238, 2357, 2789, 3022, 3693 |
| HpyAV | CCTTC | 6 cut(s) | 402, 423, 543, 2120, 2473, 3452 |
| HpyCH4IV | ACGT | 4 cut(s) | 407, 1627, 2795, 3043 |
| HpySE526I | ACGT | 4 cut(s) | 407, 1627, 2795, 3043 |
| HspAI | GCGC | 2 cut(s) | 194, 291 |
| Kpn2I | TCCGGA | 1 cut(s) | 1430 |
| KpnI | GGTACC | 1 cut(s) | 3349 |
| KroI | GCCGGC | 1 cut(s) | 354 |
| KroNI | GCCGGC | 1 cut(s) | 356 |
| KspI | CCGCGG | 1 cut(s) | 425 |
| Kzo9I | GATC | 8 cut(s) | 11, 104, 652, 981, 1000, 1786, 2449, 2725 |
| LmnI | GCTCC | 5 cut(s) | 119, 721, 1433, 1881, 3453 |
| LweI | GCATC | 8 cut(s) | 2132, 2166, 2407, 2465, 3200, 3289, 3495, 3701 |
| MaeI | CTAG | 8 cut(s) | 1004, 1151, 1560, 2955, 3351, 3380, 3764, 3776 |
| MaeII | ACGT | 4 cut(s) | 407, 1627, 2795, 3043 |
| MaeIII | GTNAC | 6 cut(s) | 55, 696, 950, 963, 2777, 2865 |
| MalI | GATC | 8 cut(s) | 13, 106, 654, 983, 1002, 1788, 2451, 2727 |
| MbiI | CCGCTC | 1 cut(s) | 2104 |
| MboI | GATC | 8 cut(s) | 11, 104, 652, 981, 1000, 1786, 2449, 2725 |
| MfeI | CAATTG | 3 cut(s) | 168, 1071, 3588 |
| MflI | RGATCY | 4 cut(s) | 104, 981, 1000, 1786 |
| MhlI | GDGCHC | 7 cut(s) | 1674, 1689, 1835, 2098, 2832, 3140, 3450 |
| MlsI | TGGCCA | 6 cut(s) | 186, 212, 2282, 2381, 3123, 3413 |
| MluNI | TGGCCA | 6 cut(s) | 186, 212, 2282, 2381, 3123, 3413 |
| MlyI | GAGTC | 9 cut(s) | 63, 82, 248, 497, 1904, 2327, 2343, 3721, 3821 |
| MmeI | TCCRAC | 3 cut(s) | 1256, 1575, 2346 |
| Mox20I | TGGCCA | 6 cut(s) | 186, 212, 2282, 2381, 3123, 3413 |
| Mph1103I | ATGCAT | 2 cut(s) | 3241, 3488 |
| MroI | TCCGGA | 1 cut(s) | 1430 |
| MroNI | GCCGGC | 1 cut(s) | 354 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1030, 2038 |
| MscI | TGGCCA | 6 cut(s) | 186, 212, 2282, 2381, 3123, 3413 |
| MslI | CAYNNNNRTG | 6 cut(s) | 468, 1677, 1814, 1824, 2026, 2162 |
| Msp20I | TGGCCA | 6 cut(s) | 186, 212, 2282, 2381, 3123, 3413 |
| MspA1I | CMGCKG | 3 cut(s) | 285, 345, 424 |
| MspI | CCGG | 3 cut(s) | 99, 355, 1431 |
| MspR9I | CCNGG | 7 cut(s) | 209, 1604, 1965, 2304, 2427, 3153, 3651 |
| MunI | CAATTG | 3 cut(s) | 168, 1071, 3588 |
| Mva1269I | GAATGC | 3 cut(s) | 2593, 2821, 3488 |
| MvaI | CCWGG | 7 cut(s) | 209, 1604, 1965, 2304, 2427, 3153, 3651 |
| MvnI | CGCG | 2 cut(s) | 293, 424 |
| NaeI | GCCGGC | 1 cut(s) | 356 |
| NcoI | CCATGG | 4 cut(s) | 396, 1021, 1291, 1506 |
| NdeI | CATATG | 3 cut(s) | 26, 1781, 2075 |
| NdeII | GATC | 8 cut(s) | 11, 104, 652, 981, 1000, 1786, 2449, 2725 |
| NgoMIV | GCCGGC | 1 cut(s) | 354 |
| NlaIV | GGNNCC | 8 cut(s) | 106, 115, 131, 723, 1833, 2108, 2301, 3347 |
| NmuCI | GTSAC | 4 cut(s) | 55, 963, 2777, 2865 |
| NsiI | ATGCAT | 2 cut(s) | 3241, 3488 |
| NspV | TTCGAA | 1 cut(s) | 416 |
| OliI | CACNNNNGTG | 1 cut(s) | 1677 |
| PaeI | GCATGC | 3 cut(s) | 322, 2025, 2915 |
| PaeR7I | CTCGAG | 3 cut(s) | 1934, 2097, 3081 |
| PagI | TCATGA | 1 cut(s) | 1630 |
| PciI | ACATGT | 3 cut(s) | 1271, 3037, 3166 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 413, 488, 1870 |
| PctI | GAATGC | 3 cut(s) | 2593, 2821, 3488 |
| PdiI | GCCGGC | 1 cut(s) | 356 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1030, 2038 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1728, 1828 |
| PfoI | TCCNGGA | 2 cut(s) | 1963, 3151 |
| PleI | GAGTC | 9 cut(s) | 62, 82, 248, 496, 1904, 2326, 2342, 3721, 3820 |
| PpsI | GAGTC | 9 cut(s) | 62, 82, 248, 496, 1904, 2326, 2342, 3721, 3820 |
| Ppu21I | YACGTR | 1 cut(s) | 3044 |
| PpuMI | RGGWCCY | 1 cut(s) | 2107 |
| PscI | ACATGT | 3 cut(s) | 1271, 3037, 3166 |
| PsiI | TTATAA | 1 cut(s) | 2720 |
| Psp124BI | GAGCTC | 3 cut(s) | 2832, 3140, 3450 |
| Psp5II | RGGWCCY | 1 cut(s) | 2107 |
| Psp6I | CCWGG | 7 cut(s) | 207, 1602, 1963, 2302, 2425, 3151, 3649 |
| PspFI | CCCAGC | 3 cut(s) | 1858, 1973, 2559 |
| PspGI | CCWGG | 7 cut(s) | 207, 1602, 1963, 2302, 2425, 3151, 3649 |
| PspN4I | GGNNCC | 8 cut(s) | 106, 115, 131, 723, 1833, 2108, 2301, 3347 |
| PspOMI | GGGCCC | 1 cut(s) | 1831 |
| PspPI | GGNCC | 7 cut(s) | 30, 1600, 1831, 1832, 2107, 3149, 3548 |
| PspPPI | RGGWCCY | 1 cut(s) | 2107 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2038, 2070 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1682 |
| PsuI | RGATCY | 4 cut(s) | 104, 981, 1000, 1786 |
| PvuII | CAGCTG | 1 cut(s) | 285 |
| RsaI | GTAC | 8 cut(s) | 898, 1581, 1867, 2072, 3042, 3347, 3472, 3648 |
| RsaNI | GTAC | 8 cut(s) | 897, 1580, 1866, 2071, 3041, 3346, 3471, 3647 |
| RseI | CAYNNNNRTG | 6 cut(s) | 468, 1677, 1814, 1824, 2026, 2162 |
| SacI | GAGCTC | 3 cut(s) | 2832, 3140, 3450 |
| SacII | CCGCGG | 1 cut(s) | 425 |
| Sau3AI | GATC | 8 cut(s) | 11, 104, 652, 981, 1000, 1786, 2449, 2725 |
| Sau96I | GGNCC | 7 cut(s) | 30, 1600, 1831, 1832, 2107, 3149, 3548 |
| SchI | GAGTC | 9 cut(s) | 63, 82, 248, 497, 1904, 2327, 2343, 3721, 3821 |
| ScrFI | CCNGG | 7 cut(s) | 209, 1604, 1965, 2304, 2427, 3153, 3651 |
| SduI | GDGCHC | 7 cut(s) | 1674, 1689, 1835, 2098, 2832, 3140, 3450 |
| SfaNI | GCATC | 8 cut(s) | 2132, 2166, 2407, 2465, 3200, 3289, 3495, 3701 |
| SfcI | CTRYAG | 2 cut(s) | 669, 2571 |
| Sfr274I | CTCGAG | 3 cut(s) | 1934, 2097, 3081 |
| Sfr303I | CCGCGG | 1 cut(s) | 425 |
| SfuI | TTCGAA | 1 cut(s) | 416 |
| SgrAI | CRCCGGYG | 1 cut(s) | 98 |
| SgrBI | CCGCGG | 1 cut(s) | 425 |
| SinI | GGWCC | 3 cut(s) | 30, 2107, 3149 |
| SlaI | CTCGAG | 3 cut(s) | 1934, 2097, 3081 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 468, 1677, 1814, 1824, 2026, 2162 |
| SmlI | CTYRAG | 4 cut(s) | 1934, 2097, 2825, 3081 |
| SmoI | CTYRAG | 4 cut(s) | 1934, 2097, 2825, 3081 |
| SnaBI | TACGTA | 1 cut(s) | 3044 |
| SphI | GCATGC | 3 cut(s) | 322, 2025, 2915 |
| SspMI | CTAG | 8 cut(s) | 1004, 1151, 1560, 2955, 3351, 3380, 3764, 3776 |
| SstI | GAGCTC | 3 cut(s) | 2832, 3140, 3450 |
| StyD4I | CCNGG | 7 cut(s) | 207, 1602, 1963, 2302, 2425, 3151, 3649 |
| StyI | CCWWGG | 6 cut(s) | 377, 396, 1021, 1291, 1506, 1877 |
| TaiI | ACGT | 4 cut(s) | 410, 1630, 2798, 3046 |
| TaqI | TCGA | 9 cut(s) | 416, 491, 1935, 2098, 2113, 2597, 2659, 3082, 3598 |
| TaqII | GACCGA | 1 cut(s) | 662 |
| TatI | WGTACW | 2 cut(s) | 2070, 3470 |
| TauI | GCSGC | 7 cut(s) | 65, 68, 291, 376, 727, 2394, 2992 |
| TscAI | CASTG | 8 cut(s) | 550, 1247, 1801, 2008, 2188, 2874, 2938, 3074 |
| TseFI | GTSAC | 4 cut(s) | 55, 963, 2777, 2865 |
| Tsp45I | GTSAC | 4 cut(s) | 55, 963, 2777, 2865 |
| TspGWI | ACGGA | 1 cut(s) | 4 |
| TspRI | CASTG | 8 cut(s) | 550, 1247, 1801, 2008, 2188, 2874, 2938, 3074 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1728, 1828 |
| VpaK11BI | GGWCC | 3 cut(s) | 30, 2107, 3149 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2424, 3779 |
| XapI | RAATTY | 8 cut(s) | 1298, 1357, 1956, 2167, 2973, 3172, 3574, 3854 |
| XbaI | TCTAGA | 2 cut(s) | 1003, 1150 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 205, 544, 1019 |
| XhoI | CTCGAG | 3 cut(s) | 1934, 2097, 3081 |
| XmiI | GTMKAC | 4 cut(s) | 566, 1077, 1268, 3686 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1030, 2038 |
| XspI | CTAG | 8 cut(s) | 1004, 1151, 1560, 2955, 3351, 3380, 3764, 3776 |
| Zsp2I | ATGCAT | 2 cut(s) | 3241, 3488 |