Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006809

Physical Location & Seq

Genomic Coordinates Forward (+)

2444518 .. 2447703

Gene Structure 3186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0034400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCCGGAAGTAGAAGCATAGGCTCTGAGCCAATCCAAGATTCCTCAGACCCTAATTCAAAGAAAGCCAGGGGTTTAACCATTGAAGGGTACCCAGTTGAGGGTTTATCAATTGGAGGCCACGAAACCTGTGTAATCTTTCCATCTCTCAAGTTGTCATTTGATATTGGACGATGCCCACAACGTGCTATTGCCCAAGACTTCCTCTTTATCTCACATGCCCACATGGATCACATTGGAGGACTGCCTATGTATGTTGCAACTCGTGGGCTATACAGCATGAAGCCCCCAACTATCATTGTACCAAAATGTATAAAAGAAGTTGTTGAAGAACTCTTTGAGGTGCACAGAAAAATGGATCAATCGGAGCTGAAGCATAATCTGATTGGCTTGGATGCTGGAGAAGAATTCCATATGAGAAAGGATCTCAAAGTAAAAGCTTTTAGGACTTATCATAGAATACCAAGTCAGGGTTACGTAGTATACTCGGTAAAACATAAACTTAAGCAGGAGTATCTCGGCCTATCTGGGACTGAAATTAAAGAGTTGAAATTATCAGGCGTGGAGATTACAGATACTTTGATAGAACCTCAAGTTGCTTTCACAGGAGATACCACATCTGATTTCATAGTTGACAGTAGTAATATTGATGTGCTGAGAGCAAAGATTCTTGTCATGGAGAGTACCTTCCTAGATGAGTCAATTACAGTGGAGCATGCAAGAGATTATGGACACATTCATCTATCTGAGATAATTAATCATGCAGAAAGGTTCGAAAACAAAGCAATTCTTCTTATTCACTTCTCAGCTCGATACACAGTGGAGGAAATTCAACGAGCTGTATCGGCGTTGCCTCCTCCTTTAGCAGGGCGAGTTTTTGCACTTACAGAAGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

299

Amino Acids

33.43

Weight (kDa)

6.06

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B_2	PF12706	67 - 268	1.8e-11	Beta-lactamase superfamily domain
Anti-Pycsar_Apyc1	PF23023	67 - 270	1.1e-07	Anti-Pycsar protein Apyc1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11270 AT4G11270
fragaria_vesca	FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240 FvH4_5g03240
malus_domestica	MD06G1091700.v1.1
prunus_persica	Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1 Prupe.5G106900_v2.0.a1
pyrus_communis	pycom06g08780
rosa_chinensis	RchiOBHm_Chr7g0196531
rosa_laevigata	RLG00000004007
rosa_multiflora	Rmu_co8334943.1_g000001 Rmu_sc0013350.1_g000008 Rmu_sc0017231.1_g000007
rosa_roxburghii	Rroxscaffold_3G00259220
rosa_rugosa	Rorug07G0034400
rosa_samantha	Rh7AG158600 Rh7BG160600 Rh7CG167000 Rh7DG159800
rosa_wichuraiana	Rw7G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	483
AclWI	GGATC	3 cut(s)	237, 366, 432
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	407, 828
AcuI	CTGAAG	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	3 cut(s)	92, 303, 685
AfiI	CCNNNNNNNGG	5 cut(s)	87, 100, 101, 470, 866
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	5 cut(s)	60, 86, 329, 550, 833
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	4 cut(s)	370, 440, 809, 839
AluI	AGCT	4 cut(s)	370, 440, 809, 839
Alw21I	GWGCWC	1 cut(s)	348
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	3 cut(s)	237, 366, 432
AoxI	GGCC	3 cut(s)	3, 118, 520
ApaLI	GTGCAC	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	407, 828
AseI	ATTAAT	1 cut(s)	756
Asp718I	GGTACC	1 cut(s)	90
AsuII	TTCGAA	1 cut(s)	774
BaeGI	GKGCMC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	70
BfaI	CTAG	1 cut(s)	692
BfrI	CTTAAG	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	164, 385
BmuI	ACTGGG	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	774
BpuEI	CTTGAG	2 cut(s)	134, 576
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 100, 101, 470, 866
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	5 cut(s)	87, 100, 101, 470, 866
BseMII	CTCAG	5 cut(s)	18, 60, 647, 738, 819
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	846
BseSI	GKGCMC	1 cut(s)	348
BshFI	GGCC	3 cut(s)	5, 120, 522
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	5 cut(s)	87, 100, 101, 470, 866
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	3 cut(s)	5, 120, 522
Bsp119I	TTCGAA	1 cut(s)	774
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	229, 358, 424
BspANI	GGCC	3 cut(s)	5, 120, 522
BspCNI	CTCAG	5 cut(s)	19, 59, 648, 739, 818
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	3 cut(s)	237, 366, 432
BspT104I	TTCGAA	1 cut(s)	774
BspT107I	GGYRCC	1 cut(s)	90
BspTI	CTTAAG	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	229, 358, 424
BssNAI	GTATAC	1 cut(s)	484
BssSI	CACGAG	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	638, 709, 820
BstAFI	CTTAAG	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	478
BstBI	TTCGAA	1 cut(s)	774
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	5 cut(s)	27, 46, 656, 747, 805
BstENI	CCTNNNNNAGG	1 cut(s)	864
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	3 cut(s)	232, 361, 427
BstMBI	GATC	3 cut(s)	229, 358, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	845
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	2 cut(s)	221, 719
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	348
BstSNI	TACGTA	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BstZ17I	GTATAC	1 cut(s)	484
BsuRI	GGCC	3 cut(s)	5, 120, 522
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	714, 825
Cac8I	GCNNGC	1 cut(s)	717
Csp6I	GTAC	3 cut(s)	91, 302, 684
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	6 cut(s)	218, 226, 280, 676, 716, 761
CviQI	GTAC	3 cut(s)	91, 302, 684
DdeI	CTNAG	5 cut(s)	27, 46, 656, 747, 805
DpnI	GATC	3 cut(s)	231, 360, 426
DpnII	GATC	3 cut(s)	229, 358, 424
DraIII	CACNNNGTG	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	3
Eco105I	TACGTA	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	6 cut(s)	221, 229, 283, 679, 719, 764
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	6 cut(s)	217, 225, 279, 675, 715, 760
FauNDI	CATATG	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	483
FokI	GGATG	1 cut(s)	407
FspBI	CTAG	1 cut(s)	692
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	3 cut(s)	5, 120, 522
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	6 cut(s)	221, 229, 283, 679, 719, 764
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	3 cut(s)	41, 667, 698
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	3 cut(s)	346, 484, 634
Hpy188I	TCNGA	6 cut(s)	28, 49, 367, 384, 622, 748
Hpy8I	GTNNAC	3 cut(s)	346, 484, 634
HpyAV	CCTTC	3 cut(s)	80, 697, 884
HpyCH4III	ACNGT	3 cut(s)	638, 709, 820
HpyCH4IV	ACGT	2 cut(s)	184, 477
HpyCH4V	TGCA	5 cut(s)	260, 346, 719, 764, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	845
HpyF3I	CTNAG	5 cut(s)	27, 46, 656, 747, 805
HpySE526I	ACGT	2 cut(s)	184, 477
Hsp92II	CATG	6 cut(s)	221, 229, 283, 679, 719, 764
KpnI	GGTACC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	229, 358, 424
LmnI	GCTCC	2 cut(s)	367, 712
LweI	GCATC	2 cut(s)	164, 385
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	2 cut(s)	184, 477
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	3 cut(s)	231, 360, 426
MboI	GATC	3 cut(s)	229, 358, 424
MboII	GAAGA	3 cut(s)	341, 416, 782
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	9 cut(s)	55, 111, 407, 537, 551, 702, 753, 786, 828
MlyI	GAGTC	1 cut(s)	707
MseI	TTAA	4 cut(s)	77, 504, 540, 756
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	845
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	3 cut(s)	229, 358, 424
NlaIII	CATG	6 cut(s)	221, 229, 283, 679, 719, 764
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	498
NspI	RCATGY	2 cut(s)	221, 719
NspV	TTCGAA	1 cut(s)	774
PaeI	GCATGC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	41, 667
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
Ppu21I	YACGTR	1 cut(s)	478
PshBI	ATTAAT	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	3 cut(s)	92, 303, 685
RsaNI	GTAC	3 cut(s)	91, 302, 684
SaqAI	TTAA	4 cut(s)	77, 504, 540, 756
Sau3AI	GATC	3 cut(s)	229, 358, 424
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	348
SfaNI	GCATC	2 cut(s)	164, 385
SfuI	TTCGAA	1 cut(s)	774
SmlI	CTYRAG	3 cut(s)	149, 503, 591
SmoI	CTYRAG	3 cut(s)	149, 503, 591
SnaBI	TACGTA	1 cut(s)	478
SphI	GCATGC	1 cut(s)	719
Sse9I	AATT	9 cut(s)	55, 111, 407, 537, 551, 702, 753, 786, 828
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	638, 709, 820
TaiI	ACGT	2 cut(s)	187, 480
TaqI	TCGA	2 cut(s)	774, 811
TasI	AATT	9 cut(s)	55, 111, 407, 537, 551, 702, 753, 786, 828
TfiI	GAWTC	2 cut(s)	41, 667
Tru1I	TTAA	4 cut(s)	77, 504, 540, 756
Tru9I	TTAA	4 cut(s)	77, 504, 540, 756
TscAI	CASTG	2 cut(s)	714, 825
TspDTI	ATGAA	3 cut(s)	296, 616, 728
TspRI	CASTG	2 cut(s)	714, 825
Vha464I	CTTAAG	1 cut(s)	503
VneI	GTGCAC	1 cut(s)	344
VspI	ATTAAT	1 cut(s)	756
XagI	CCTNNNNNAGG	1 cut(s)	864
XapI	RAATTY	2 cut(s)	407, 828
XceI	RCATGY	2 cut(s)	221, 719
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.