pycom06g08780

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0006809
Physical Location & Seq
Reverse (-)
13978807 .. 13985179
6373 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3324 bp
ATGAGACTATCAATTCGTTTCATTCCATTGGCCAATTATGTTCTTCGTATTGAATCACTTTGCTTTAGTTCTGAAGAACCTTTACAGTGGAAACCCCATGTTACAATCTGGTCTGCATGTTGGGCACACGATGACCACTGGAATTTGGGTTTGTGGTTCAAGTTGCACGGAGCAGGTGTTGACTGGAATACAAATTTTAACTCGAGTAATGAATCTGAGGACCCAGGTGACATGGAGACCAAACTACCATCTTCAAAATCTTTTGTTTCTAGCTCAGGAAGTGTAAATAGTGTAGATAATGACAATCTTGGTTTACTTAGTAAGAGAGGAGTTGTGTCTTCTTCCATGGTTATTTCTGAAACATTATTTGCTCCTTATGCTGTTGTTTATGGCTTCTTTAGTGGAAAAATAGAGGTTGTTCGCTTTGATTTGTTTGAGGGCCTAGCTCCTCTTGGTGGGAGTTCACATGATGGTGAGGTGAAGCCACAAATATCCAGACAGCTTTTTTCAGGGCACACGGGTGCTGTACTCTGTTTGGCAGCACATAGGATGGTGGGTTTTGCCAAAGGGTGGAGTTTCAATCAAGTTTTGGTGTCTGGAAGTATGGATTGCACAGTTCGCATATGGGATCTTGAAACTGGAAATCTCATCACAGTCATGCACCAACATGTGTGTCCAGTGCGCCAAATAATTCTTCCCCCAGCTCATACCTACCGTCCTTGGAGTGATTGTTTTCTCTCAGTTGGGGAGGATTCATGTGTTGCACTAGCTTCTCTCGAGACATTGCGAGTAGAGAGAGTGTTTTCCGGACATCCCAGCTATCCTGCAAAAGTTGTATGGGATGGTGGAAGAGGTTATATTGCATGTTTGTGCCGAAACCATTCAGGAACTGATGCTGTTGATATTTTGTACATTTGGGACGTAAAGACAGGTGCTCGAGAGCGGGTCCTCCGAGGGACGGCATCTCATTCAATGTTTGACCATTTTTGTAAAGGCATCAGCATAAATTCCACATCTGGTAGTGTATTGAATGTGAATACCTCAGTTTCCTCACTGCTTCTTCCAGTCATTGAAGAAGGGATCTCTACTCACACTCATCTGAATAATTCAGACAAATTGGCCACTTCCTCAAATATGGTGCCTGGTACTGTGGTTGGGTCCAATACTTCCAGAGTTAGTAGTGCTGAAAAACTATTTCCATCCTATCCAACGACCCTTCAAAGCAGCAAGCATCCGATCAAGTGCTCTTGCCCTTTTCCTGGAATTGCTGCTCTGAGTTTTGACCTTGCATCATTAGTGTTTCCTTATCACAAGGATGACTTGATGGCAAGTGGGAATAACAAGAAAGAGCTTAACCATGTGAAGGGGAAGGCATCAGAGACACCAAGTCCCCACAACATTCCTGTAGCGAATGGTTCTGGTGTGCATGGGAACTCGAATGACACTGCAGAAGAGAACGTATGGATTAAGACGCTTGAAGATTGTTTACTTCGATTTAGCTTGGCATTTTTGCACTTATGGAATGTGGATTCTGAGCTCGATAACATGCTTATAACTGACATGAAGCTGAAGAGACCAGATAACTTTTTTGTAGCTTCTGGTTTTCAAGGAGACAAAGGGTCTTTGACATTGGCATTTCCTAATTTGAATGCAAATCTTGAGCTTTGGAGAATGTCGTCAGAGTTTTGTGCAATGAGGTCACTCACAATGGTTTCCCTTGCTCAACGCATGATTAGCTTGTCACACACTAGTTCAAATGACAGCAGTTCTTTAGCAGCATTTTATACTAGGAATTTTGCAGATAAAGTTCCAGACACAAAGCCACCTTTACTCCAGCTTTTGGTGAGTTTCTGGCAAGATGAAAGTGAACATGTACGTATGGCTGCACGCTCTCTATTCCACTGTGCTGCTTCACGAGCGATTCCACTTCCACTGTGTAGTAAAAAAGAAAGTGGCTTTGCAAATCTGAGTGCTCTAAGTGGACTTGGAGAGAATGGGCATGTAAATTCACATGTAGAAGAAATATTGGCTAAGAAATTGTATTCCGACCAGCTGCCAGAACCACAAGGGATTTCTAAGGTTGAAGAATTTAATATTCTTGCATGGCTAGAATCATTTGAGATGCAAGATTGGATTTCTTGTGTTGGGGGGACAAGCCAAGATGCGATGACATCTCATATTATTGTTGCAGCGGCTTTGGCTATTTGGTACCCTAGTCTTGTAAAGCCATGTCTTGCCATGCTTGTTGTTCACCCATTAATGAAGCTGGTTATGGCAATGAATGAGAAATATAGTTCCACTGCAGCAGAGCTCCTTGCTGAAGGTATGGAGAGAACATGGAAACAGTGCATTAGTTCAGAAATACCTCGTCTGATTGGGGATATATATTTCCAGATAGAGTGTGTAAGTGGTCCATCTGCAAACTCAGCCTCACAAAATTTGGCTGTACCGGTTGGCCTTCGAGAGATATTGGTTGGTGTTCTTCTACCAAGTTTAGCTGTGGCTGATGTCCCAGGGTTTTTAACTGTTATGGAAAGCCAAATCTGGTCTACTGCATCTGATTCCCCTGTTCATCTAGTATCTCTTATGACTTTGATCAGGGTTGTGCGTAATTCTCCAAGATACTTGGCTCAATACCTTGATAAGGTAATTGACTTCATTTTACAAACTGTGGACCCGAGCAACTCAGTCATGCGCAAAACTTGCTTTCAAATTTCAATGACTGCATTAAAGGAAGTTGTACGTGCATTCCCAATGGTAGCTCTAAATGATACATGGACCAAATTGGCCGTTGGGGATGTGATTGGAGAGAGAAACAATGCTAGTATTCGGGTTTATGACATGCAAAGTGTTATGAAGATAAAAGTTTTGGATGCAAGTGGACCTCCCGGACTTCCAAATTTGCTTGCACCCAGTTCAGAAATGATGATAGTTACTGCCATTTCAGCTTTGGGCTTTTCCCCGGATGGAGAGGGGCTGGTTGCTTTCTCTGAGCATGGATTAATGATCAGATGGTGGTCATTGGGATCTGCGTGGTGGGAGAAACTGAGTCGAAACTTAGTTCCTGTCCAGTGCACAAAATTGATCTTTGTTCCTCCCTGGGAGGGATTCTCACCTAATTCTTCTAGGTCAAGCATAATGGCAAGCATTATGGGACATGATAGGCCTGCCAATATTCAGGAAAGCGCAAAGGGTTTGAGTCAGGCGGACAATATGAAACTATTGATTCACAATCTTGACCTCTCCTATCGATTAGAATGGGTTGGTGCACGGAAAGTACTTCTTACTAGGCATGGCCAAGAGTTGGCCAGTTTCCCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

1108

Amino Acids

121.55

Weight (kDa)

6.15

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 165 - 273 2.1e-06 WDR3 first beta-propeller domain
WD40 PF00400 167 - 210 4.7e-06 WD domain, G-beta repeat
WD40_Prp19 PF24814 167 - 264 3.9e-06 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 169 - 230 5e-07 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1553
AarI CACCTGC 1 cut(s) 164
Acc16I TGCGCA 1 cut(s) 2696
Acc36I ACCTGC 1 cut(s) 164
Acc65I GGTACC 1 cut(s) 2208
AccB1I GGYRCC 2 cut(s) 1138, 2208
AccB7I CCANNNNNTGG 3 cut(s) 570, 1840, 3304
AccBSI CCGCTC 1 cut(s) 943
AccI GTMKAC 1 cut(s) 2549
AccIII TCCGGA 1 cut(s) 806
AciI CCGC 3 cut(s) 943, 2192, 3206
AclWI GGATC 3 cut(s) 636, 1088, 3034
AcoI YGGCCR 5 cut(s) 30, 1119, 2787, 3295, 3306
AcsI RAATTY 9 cut(s) 142, 193, 1006, 1792, 2005, 2087, 2437, 2712, 2899
AcuI CTGAAG 3 cut(s) 93, 1589, 2340
AfaI GTAC 8 cut(s) 528, 911, 1147, 1875, 2210, 2448, 2742, 3279
AfiI CCNNNNNNNGG 9 cut(s) 455, 570, 958, 1259, 1363, 1840, 2644, 3104, 3304
AflIII ACRYGT 3 cut(s) 667, 1870, 2011
AgeI ACCGGT 1 cut(s) 2449
AhdI GACNNNNNGTC 2 cut(s) 1386, 1618
AhlI ACTAGT 1 cut(s) 1748
AjnI CCWGG 5 cut(s) 223, 1141, 1258, 2512, 3098
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AleI CACNNNNGTG 1 cut(s) 519
Alw21I GWGCWC 7 cut(s) 937, 1247, 1539, 1975, 2313, 3077, 3271
Alw26I GTCTC 5 cut(s) 230, 773, 1373, 1567, 1605
Alw44I GTGCAC 2 cut(s) 3073, 3267
AlwI GGATC 3 cut(s) 636, 1088, 3034
AlwNI CAGNNNCTG 1 cut(s) 890
Ama87I CYCGRG 4 cut(s) 202, 776, 936, 2677
Aor13HI TCCGGA 1 cut(s) 806
AoxI GGCC 8 cut(s) 30, 439, 1119, 2455, 2787, 3164, 3295, 3306
ApaLI GTGCAC 2 cut(s) 3073, 3267
ApeKI GCWGC 9 cut(s) 539, 1224, 1268, 1775, 1883, 1907, 2053, 2189, 2303
ApoI RAATTY 9 cut(s) 142, 193, 1006, 1792, 2005, 2087, 2437, 2712, 2899
ArsI GACNNNNNNTTYG 1 cut(s) 29
AseI ATTAAT 2 cut(s) 2258, 3002
AsiGI ACCGGT 1 cut(s) 2449
Asp700I GAANNNNTTC 1 cut(s) 880
Asp718I GGTACC 1 cut(s) 2208
AspLEI GCGC 3 cut(s) 684, 2697, 3188
AspS9I GGNCC 8 cut(s) 220, 439, 946, 1158, 2411, 2674, 2778, 2882
AsuC2I CCSGG 2 cut(s) 2889, 2963
AsuHPI GGTGA 6 cut(s) 239, 485, 490, 1855, 2243, 3105
AvaI CYCGRG 4 cut(s) 202, 776, 936, 2677
AvaII GGWCC 7 cut(s) 220, 946, 1158, 2411, 2674, 2778, 2882
BaeGI GKGCMC 4 cut(s) 127, 516, 3077, 3271
BaeI ACNNNNGTAYC 4 cut(s) 1137, 1170, 2200, 2233
BalI TGGCCA 4 cut(s) 32, 1121, 3297, 3308
BanI GGYRCC 2 cut(s) 1138, 2208
BanII GRGCYC 2 cut(s) 1539, 2313
BarI GAAGNNNNNNTAC 4 cut(s) 66, 98, 1470, 1502
BauI CACGAG 1 cut(s) 1914
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 7 cut(s) 937, 1247, 1539, 1975, 2313, 3077, 3271
BbvI GCAGC 9 cut(s) 551, 1236, 1255, 1787, 1870, 1894, 2040, 2201, 2315
BccI CCATC 9 cut(s) 256, 464, 544, 836, 1207, 1318, 2422, 2960, 3006
BceAI ACGGC 2 cut(s) 975, 2774
BciT130I CCWGG 5 cut(s) 225, 1143, 1260, 2514, 3100
BclI TGATCA 2 cut(s) 2595, 3006
BcnI CCSGG 2 cut(s) 2889, 2963
BcoDI GTCTC 5 cut(s) 230, 773, 1373, 1567, 1605
BcuI ACTAGT 1 cut(s) 1748
BfmI CTRYAG 3 cut(s) 1404, 1446, 2301
BfuAI ACCTGC 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 3279
Bme1390I CCNGG 7 cut(s) 225, 1143, 1260, 2514, 2889, 2963, 3100
Bme18I GGWCC 7 cut(s) 220, 946, 1158, 2411, 2674, 2778, 2882
BmeRI GACNNNNNGTC 2 cut(s) 1386, 1618
BmeT110I CYCGRG 4 cut(s) 202, 776, 936, 2677
BmgT120I GGNCC 8 cut(s) 220, 439, 946, 1158, 2411, 2674, 2778, 2882
BmiI GGNNCC 6 cut(s) 222, 947, 1140, 1159, 2210, 2676
BmrFI CCNGG 7 cut(s) 225, 1143, 1260, 2514, 2889, 2963, 3100
BmrI ACTGGG 1 cut(s) 2907
BmuI ACTGGG 1 cut(s) 2907
BpiI GAAGAC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 3095, 3127
BpmI CTGGAG 1 cut(s) 1817
Bpu10I CCTNAGC 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 1679
BpuMI CCSGG 2 cut(s) 2889, 2963
Bsa29I ATCGAT 1 cut(s) 3250
BsaAI YACGTR 2 cut(s) 1877, 2744
BsaI GGTCTC 2 cut(s) 230, 1567
BsaJI CCNNGG 9 cut(s) 223, 345, 719, 952, 2512, 2513, 2961, 3098, 3099
BsaWI WCCGGW 2 cut(s) 806, 2449
BsaXI ACNNNNNCTCC 6 cut(s) 162, 192, 715, 745, 1815, 1845
Bsc4I CCNNNNNNNGG 9 cut(s) 455, 570, 958, 1259, 1363, 1840, 2644, 3104, 3304
Bse118I RCCGGY 1 cut(s) 2449
Bse1I ACTGG 8 cut(s) 143, 188, 643, 677, 1064, 2913, 3070, 3309
Bse3DI GCAATG 3 cut(s) 782, 1698, 2283
BseAI TCCGGA 1 cut(s) 806
BseBI CCWGG 5 cut(s) 225, 1143, 1260, 2514, 3100
BseCI ATCGAT 1 cut(s) 3250
BseDI CCNNGG 9 cut(s) 223, 345, 719, 952, 2512, 2513, 2961, 3098, 3099
BseGI GGATG 9 cut(s) 555, 811, 847, 1199, 1231, 1321, 2803, 2878, 2971
BseLI CCNNNNNNNGG 9 cut(s) 455, 570, 958, 1259, 1363, 1840, 2644, 3104, 3304
BseMI GCAATG 3 cut(s) 782, 1698, 2283
BseNI ACTGG 8 cut(s) 143, 188, 643, 677, 1064, 2913, 3070, 3309
BseRI GAGGAG 2 cut(s) 342, 438
BseSI GKGCMC 4 cut(s) 127, 516, 3077, 3271
BseXI GCAGC 9 cut(s) 551, 1236, 1255, 1787, 1870, 1894, 2040, 2201, 2315
BseYI CCCAGC 2 cut(s) 700, 815
BsgI GTGCAG 1 cut(s) 1869
BshFI GGCC 8 cut(s) 32, 441, 1121, 2457, 2789, 3166, 3297, 3308
BshNI GGYRCC 2 cut(s) 1138, 2208
BshTI ACCGGT 1 cut(s) 2449
BshVI ATCGAT 1 cut(s) 3250
BsiHKAI GWGCWC 7 cut(s) 937, 1247, 1539, 1975, 2313, 3077, 3271
BsiHKCI CYCGRG 4 cut(s) 202, 776, 936, 2677
BsiSI CCGG 4 cut(s) 807, 2450, 2889, 2963
BslFI GGGAC 6 cut(s) 932, 970, 1374, 2164, 2495, 3168
BslI CCNNNNNNNGG 9 cut(s) 455, 570, 958, 1259, 1363, 1840, 2644, 3104, 3304
BsmAI GTCTC 5 cut(s) 230, 773, 1373, 1567, 1605
BsmFI GGGAC 6 cut(s) 932, 970, 1374, 2164, 2495, 3168
BsmI GAATGC 2 cut(s) 1654, 2747
BsnI GGCC 8 cut(s) 32, 441, 1121, 2457, 2789, 3166, 3297, 3308
Bso31I GGTCTC 2 cut(s) 230, 1567
BsoBI CYCGRG 4 cut(s) 202, 776, 936, 2677
Bsp1286I GDGCHC 9 cut(s) 127, 516, 937, 1247, 1539, 1975, 2313, 3077, 3271
Bsp13I TCCGGA 1 cut(s) 806
Bsp1407I TGTACA 1 cut(s) 909
Bsp143I GATC 7 cut(s) 628, 1080, 1236, 2595, 3006, 3026, 3084
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 3 cut(s) 943, 2192, 3206
BspANI GGCC 8 cut(s) 32, 441, 1121, 2457, 2789, 3166, 3297, 3308
BspDI ATCGAT 1 cut(s) 3250
BspEI TCCGGA 1 cut(s) 806
BspLI GGNNCC 6 cut(s) 222, 947, 1140, 1159, 2210, 2676
BspMAI CTGCAG 2 cut(s) 1450, 2305
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 3 cut(s) 636, 1088, 3034
BspT107I GGYRCC 2 cut(s) 1138, 2208
BspTNI GGTCTC 2 cut(s) 230, 1567
BsrBI CCGCTC 1 cut(s) 943
BsrDI GCAATG 3 cut(s) 782, 1698, 2283
BsrFI RCCGGY 1 cut(s) 2449
BsrGI TGTACA 1 cut(s) 909
BsrI ACTGG 8 cut(s) 143, 188, 643, 677, 1064, 2913, 3070, 3309
BssAI RCCGGY 1 cut(s) 2449
BssECI CCNNGG 9 cut(s) 223, 345, 719, 952, 2512, 2513, 2961, 3098, 3099
BssMI GATC 7 cut(s) 628, 1080, 1236, 2595, 3006, 3026, 3084
BssSI CACGAG 1 cut(s) 1914
BssT1I CCWWGG 2 cut(s) 345, 719
Bst2BI CACGAG 1 cut(s) 1914
Bst2UI CCWGG 5 cut(s) 225, 1143, 1260, 2514, 3100
Bst6I CTCTTC 3 cut(s) 844, 1446, 1565
BstAPI GCANNNNNTGC 1 cut(s) 2703
BstAUI TGTACA 1 cut(s) 909
BstBAI YACGTR 2 cut(s) 1877, 2744
BstC8I GCNNGC 5 cut(s) 1229, 1888, 2907, 3145, 3168
BstDSI CCRYGG 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 2642
BstF5I GGATG 9 cut(s) 555, 811, 847, 1199, 1231, 1321, 2803, 2878, 2971
BstHHI GCGC 3 cut(s) 684, 2697, 3188
BstKTI GATC 7 cut(s) 631, 1083, 1239, 2598, 3009, 3029, 3087
BstMAI GTCTC 5 cut(s) 230, 773, 1373, 1567, 1605
BstMBI GATC 7 cut(s) 628, 1080, 1236, 2595, 3006, 3026, 3084
BstMWI GCNNNNNNNGC 9 cut(s) 122, 377, 618, 1734, 1916, 2198, 2426, 2703, 2945
BstNI CCWGG 5 cut(s) 225, 1143, 1260, 2514, 3100
BstNSI RCATGY 8 cut(s) 120, 671, 867, 1549, 1874, 2003, 2015, 2845
BstSCI CCNGG 7 cut(s) 223, 1141, 1258, 2512, 2887, 2961, 3098
BstSFI CTRYAG 3 cut(s) 1404, 1446, 2301
BstSLI GKGCMC 4 cut(s) 127, 516, 3077, 3271
BstSNI TACGTA 1 cut(s) 1877
BstV1I GCAGC 9 cut(s) 551, 1236, 1255, 1787, 1870, 1894, 2040, 2201, 2315
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 3 cut(s) 628, 1080, 3026
BstYI RGATCY 3 cut(s) 628, 1080, 3026
Bsu15I ATCGAT 1 cut(s) 3250
BsuRI GGCC 8 cut(s) 32, 441, 1121, 2457, 2789, 3166, 3297, 3308
BsuTUI ATCGAT 1 cut(s) 3250
BtgI CCRYGG 1 cut(s) 345
BtgZI GCGATG 1 cut(s) 2180
BtsCI GGATG 9 cut(s) 555, 811, 847, 1199, 1231, 1321, 2803, 2878, 2971
BtsI GCAGTG 3 cut(s) 1052, 1443, 2298
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 5 cut(s) 1229, 1888, 2907, 3145, 3168
CaiI CAGNNNCTG 1 cut(s) 890
CfoI GCGC 3 cut(s) 684, 2697, 3188
Cfr10I RCCGGY 1 cut(s) 2449
Cfr13I GGNCC 8 cut(s) 220, 439, 946, 1158, 2411, 2674, 2778, 2882
ClaI ATCGAT 1 cut(s) 3250
CseI GACGC 1 cut(s) 1480
Csp6I GTAC 8 cut(s) 527, 910, 1146, 1874, 2209, 2447, 2741, 3278
CspAI ACCGGT 1 cut(s) 2449
CviQI GTAC 8 cut(s) 527, 910, 1146, 1874, 2209, 2447, 2741, 3278
DpnI GATC 7 cut(s) 630, 1082, 1238, 2597, 3008, 3028, 3086
DpnII GATC 7 cut(s) 628, 1080, 1236, 2595, 3006, 3026, 3084
DriI GACNNNNNGTC 2 cut(s) 1386, 1618
EaeI YGGCCR 5 cut(s) 30, 1119, 2787, 3295, 3306
Eam1104I CTCTTC 3 cut(s) 844, 1446, 1565
Eam1105I GACNNNNNGTC 2 cut(s) 1386, 1618
EarI CTCTTC 3 cut(s) 844, 1446, 1565
EciI GGCGGA 1 cut(s) 3221
Ecl136II GAGCTC 2 cut(s) 1537, 2311
Eco105I TACGTA 1 cut(s) 1877
Eco130I CCWWGG 2 cut(s) 345, 719
Eco147I AGGCCT 1 cut(s) 3166
Eco24I GRGCYC 2 cut(s) 1539, 2313
Eco31I GGTCTC 2 cut(s) 230, 1567
Eco47I GGWCC 7 cut(s) 220, 946, 1158, 2411, 2674, 2778, 2882
Eco53kI GAGCTC 2 cut(s) 1537, 2311
Eco57I CTGAAG 3 cut(s) 93, 1589, 2340
Eco88I CYCGRG 4 cut(s) 202, 776, 936, 2677
EcoICRI GAGCTC 2 cut(s) 1537, 2311
EcoNI CCTNNNNNAGG 1 cut(s) 2642
EcoO109I RGGNCCY 3 cut(s) 220, 439, 946
EcoRII CCWGG 5 cut(s) 223, 1141, 1258, 2512, 3098
EcoT14I CCWWGG 2 cut(s) 345, 719
EcoT38I GRGCYC 2 cut(s) 1539, 2313
ErhI CCWWGG 2 cut(s) 345, 719
FalI AAGNNNNNCTT 4 cut(s) 1304, 1336, 3267, 3299
FaqI GGGAC 6 cut(s) 932, 970, 1374, 2164, 2495, 3168
FauI CCCGC 1 cut(s) 936
FauNDI CATATG 1 cut(s) 623
FbaI TGATCA 2 cut(s) 2595, 3006
FblI GTMKAC 1 cut(s) 2549
FokI GGATG 9 cut(s) 562, 798, 854, 1186, 1218, 1328, 2810, 2885, 2978
FriOI GRGCYC 2 cut(s) 1539, 2313
FspI TGCGCA 1 cut(s) 2696
GlaI GCGC 3 cut(s) 683, 2696, 3187
GsaI CCCAGC 2 cut(s) 704, 819
GsuI CTGGAG 1 cut(s) 1817
HaeIII GGCC 8 cut(s) 32, 441, 1121, 2457, 2789, 3166, 3297, 3308
HapII CCGG 4 cut(s) 807, 2450, 2889, 2963
HgaI GACGC 1 cut(s) 1480
HhaI GCGC 3 cut(s) 684, 2697, 3188
Hin6I GCGC 3 cut(s) 682, 2695, 3186
HinP1I GCGC 3 cut(s) 682, 2695, 3186
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HpaII CCGG 4 cut(s) 807, 2450, 2889, 2963
HphI GGTGA 6 cut(s) 239, 485, 490, 1855, 2243, 3105
HpyAV CCTTC 6 cut(s) 1070, 1226, 1357, 1363, 2315, 2468
HpyCH4IV ACGT 4 cut(s) 921, 1458, 1876, 2743
HpyF10VI GCNNNNNNNGC 9 cut(s) 122, 377, 618, 1734, 1916, 2198, 2426, 2703, 2945
HpySE526I ACGT 4 cut(s) 921, 1458, 1876, 2743
HspAI GCGC 3 cut(s) 682, 2695, 3186
Kpn2I TCCGGA 1 cut(s) 806
KpnI GGTACC 1 cut(s) 2212
Ksp22I TGATCA 2 cut(s) 2595, 3006
Kzo9I GATC 7 cut(s) 628, 1080, 1236, 2595, 3006, 3026, 3084
LmnI GCTCC 4 cut(s) 170, 376, 451, 2316
Lsp1109I GCAGC 9 cut(s) 551, 1236, 1255, 1787, 1870, 1894, 2040, 2201, 2315
MaeII ACGT 4 cut(s) 921, 1458, 1876, 2743
MaeIII GTNAC 5 cut(s) 100, 227, 1698, 1740, 2932
MalI GATC 7 cut(s) 630, 1082, 1238, 2597, 3008, 3028, 3086
MbiI CCGCTC 1 cut(s) 943
MboI GATC 7 cut(s) 628, 1080, 1236, 2595, 3006, 3026, 3084
MflI RGATCY 3 cut(s) 628, 1080, 3026
MhlI GDGCHC 9 cut(s) 127, 516, 937, 1247, 1539, 1975, 2313, 3077, 3271
MlsI TGGCCA 4 cut(s) 32, 1121, 3297, 3308
MluNI TGGCCA 4 cut(s) 32, 1121, 3297, 3308
MlyI GAGTC 2 cut(s) 3058, 3208
MmeI TCCRAC 2 cut(s) 1232, 2070
Mox20I TGGCCA 4 cut(s) 32, 1121, 3297, 3308
MroI TCCGGA 1 cut(s) 806
MroXI GAANNNNTTC 1 cut(s) 880
MscI TGGCCA 4 cut(s) 32, 1121, 3297, 3308
MseI TTAA 8 cut(s) 198, 1353, 1467, 2091, 2258, 2522, 2729, 3002
MslI CAYNNNNRTG 6 cut(s) 471, 519, 656, 666, 868, 1314
Msp20I TGGCCA 4 cut(s) 32, 1121, 3297, 3308
MspA1I CMGCKG 2 cut(s) 2053, 2192
MspI CCGG 4 cut(s) 807, 2450, 2889, 2963
MspR9I CCNGG 7 cut(s) 225, 1143, 1260, 2514, 2889, 2963, 3100
Mva1269I GAATGC 2 cut(s) 1654, 2747
MvaI CCWGG 5 cut(s) 225, 1143, 1260, 2514, 3100
MwoI GCNNNNNNNGC 9 cut(s) 122, 377, 618, 1734, 1916, 2198, 2426, 2703, 2945
NciI CCSGG 2 cut(s) 2889, 2963
NcoI CCATGG 1 cut(s) 345
NdeI CATATG 1 cut(s) 623
NdeII GATC 7 cut(s) 628, 1080, 1236, 2595, 3006, 3026, 3084
NlaIV GGNNCC 6 cut(s) 222, 947, 1140, 1159, 2210, 2676
NmuCI GTSAC 3 cut(s) 227, 1698, 1740
NsbI TGCGCA 1 cut(s) 2696
NspI RCATGY 8 cut(s) 120, 671, 867, 1549, 1874, 2003, 2015, 2845
OliI CACNNNNGTG 1 cut(s) 519
PaeR7I CTCGAG 3 cut(s) 202, 776, 936
PaqCI CACCTGC 1 cut(s) 164
PasI CCCWGGG 2 cut(s) 2513, 3099
PceI AGGCCT 1 cut(s) 3166
PciI ACATGT 3 cut(s) 667, 1870, 2011
PctI GAATGC 2 cut(s) 1654, 2747
PdmI GAANNNNTTC 1 cut(s) 880
PfeI GAWTC 9 cut(s) 53, 212, 752, 1529, 1921, 2111, 2561, 3108, 3226
PflMI CCANNNNNTGG 3 cut(s) 570, 1840, 3304
PfoI TCCNGGA 2 cut(s) 1258, 2887
PinAI ACCGGT 1 cut(s) 2449
PleI GAGTC 2 cut(s) 3057, 3207
PpsI GAGTC 2 cut(s) 3057, 3207
Ppu21I YACGTR 2 cut(s) 1877, 2744
PpuMI RGGWCCY 2 cut(s) 220, 946
PscI ACATGT 3 cut(s) 667, 1870, 2011
PshBI ATTAAT 2 cut(s) 2258, 3002
PsiI TTATAA 1 cut(s) 1553
Psp124BI GAGCTC 2 cut(s) 1539, 2313
Psp5II RGGWCCY 2 cut(s) 220, 946
Psp6I CCWGG 5 cut(s) 223, 1141, 1258, 2512, 3098
PspFI CCCAGC 2 cut(s) 700, 815
PspGI CCWGG 5 cut(s) 223, 1141, 1258, 2512, 3098
PspN4I GGNNCC 6 cut(s) 222, 947, 1140, 1159, 2210, 2676
PspPI GGNCC 8 cut(s) 220, 439, 946, 1158, 2411, 2674, 2778, 2882
PspPPI RGGWCCY 2 cut(s) 220, 946
PspXI VCTCGAGB 1 cut(s) 202
PstI CTGCAG 2 cut(s) 1450, 2305
PstNI CAGNNNCTG 1 cut(s) 890
PsuI RGATCY 3 cut(s) 628, 1080, 3026
PvuII CAGCTG 1 cut(s) 2053
RsaI GTAC 8 cut(s) 528, 911, 1147, 1875, 2210, 2448, 2742, 3279
RsaNI GTAC 8 cut(s) 527, 910, 1146, 1874, 2209, 2447, 2741, 3278
RseI CAYNNNNRTG 6 cut(s) 471, 519, 656, 666, 868, 1314
SacI GAGCTC 2 cut(s) 1539, 2313
SaqAI TTAA 8 cut(s) 198, 1353, 1467, 2091, 2258, 2522, 2729, 3002
Sau3AI GATC 7 cut(s) 628, 1080, 1236, 2595, 3006, 3026, 3084
Sau96I GGNCC 8 cut(s) 220, 439, 946, 1158, 2411, 2674, 2778, 2882
ScaI AGTACT 1 cut(s) 3279
SchI GAGTC 2 cut(s) 3058, 3208
ScrFI CCNGG 7 cut(s) 225, 1143, 1260, 2514, 2889, 2963, 3100
SduI GDGCHC 9 cut(s) 127, 516, 937, 1247, 1539, 1975, 2313, 3077, 3271
SfcI CTRYAG 3 cut(s) 1404, 1446, 2301
Sfr274I CTCGAG 3 cut(s) 202, 776, 936
SinI GGWCC 7 cut(s) 220, 946, 1158, 2411, 2674, 2778, 2882
SlaI CTCGAG 3 cut(s) 202, 776, 936
SmiMI CAYNNNNRTG 6 cut(s) 471, 519, 656, 666, 868, 1314
SmlI CTYRAG 4 cut(s) 202, 776, 936, 1658
SmoI CTYRAG 4 cut(s) 202, 776, 936, 1658
SnaBI TACGTA 1 cut(s) 1877
SpeI ACTAGT 1 cut(s) 1748
SseBI AGGCCT 1 cut(s) 3166
SsiI CCGC 3 cut(s) 943, 2192, 3206
SspI AATATT 3 cut(s) 2025, 2095, 3175
SstI GAGCTC 2 cut(s) 1539, 2313
StuI AGGCCT 1 cut(s) 3166
StyD4I CCNGG 7 cut(s) 223, 1141, 1258, 2512, 2887, 2961, 3098
StyI CCWWGG 2 cut(s) 345, 719
TaiI ACGT 4 cut(s) 924, 1461, 1879, 2746
TaqI TCGA 9 cut(s) 203, 777, 937, 1436, 1492, 1539, 2461, 3052, 3250
TatI WGTACW 3 cut(s) 526, 909, 3277
TauI GCSGC 1 cut(s) 2195
TfiI GAWTC 9 cut(s) 53, 212, 752, 1529, 1921, 2111, 2561, 3108, 3226
Tru1I TTAA 8 cut(s) 198, 1353, 1467, 2091, 2258, 2522, 2729, 3002
Tru9I TTAA 8 cut(s) 198, 1353, 1467, 2091, 2258, 2522, 2729, 3002
TseFI GTSAC 3 cut(s) 227, 1698, 1740
TseI GCWGC 9 cut(s) 539, 1224, 1268, 1775, 1883, 1907, 2053, 2189, 2303
Tsp45I GTSAC 3 cut(s) 227, 1698, 1740
TspGWI ACGGA 2 cut(s) 183, 3286
Van91I CCANNNNNTGG 3 cut(s) 570, 1840, 3304
VneI GTGCAC 2 cut(s) 3073, 3267
VpaK11BI GGWCC 7 cut(s) 220, 946, 1158, 2411, 2674, 2778, 2882
VspI ATTAAT 2 cut(s) 2258, 3002
XagI CCTNNNNNAGG 1 cut(s) 2642
XapI RAATTY 9 cut(s) 142, 193, 1006, 1792, 2005, 2087, 2437, 2712, 2899
XceI RCATGY 8 cut(s) 120, 671, 867, 1549, 1874, 2003, 2015, 2845
XcmI CCANNNNNNNNNTGG 1 cut(s) 2947
XhoI CTCGAG 3 cut(s) 202, 776, 936
XmiI GTMKAC 1 cut(s) 2549
XmnI GAANNNNTTC 1 cut(s) 880
ZrmI AGTACT 1 cut(s) 3279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.