pycom06g09200

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013503
Physical Location & Seq
Reverse (-)
14422735 .. 14424818
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1050 bp
ATGTTGAGCTCCACTTGCTCTCACTCTCTTATCCACCGCCCTTTCCTCCATTCCTCCGCCGCCAGAGCTAGGGTTCCGACCCGACCCGGAGCTTTACGTCCAATTTCACGGAGTTTTAGGATCTTCGAATCTCAATCCAGACCGTATAATACGAGGTGGACTAGAATATCATGTTTTAGGCAAGAGAAGTTCTCTTCAGAAACACCGAAACCGGAATATATTGAACACTTGGTACCCGAGGAAGTAGTCAAGTCCGACTTCGATGATTCTAAGGTGGTTAAAAGGGATTGGGGAGGAACGCTCCGAGAGGCTGCAGATGCAGTGTCTAGAGCAATTGGGAGTCGTTGGAGTGTGCCGTGGTCAGCAGAGACCATATTGCAGGTCATGCTACTATGGGTTGCTGCTTTCTGCTTCATAGGTTCTTGGATGGTTCCATTTGCAGCTCACGTGGCAGGGTTCAGCAGGGAATCATTAACAAATAGAGGACAAGCCTTATTTAGCCTGGTGACTGATGTAACTGAAGGTCTTGTTGGAATTATGATAATTTGTCGCTGCTTATCACGTTTTCGCCCTCTTCCTCCGGATTGGTTTAAATTTAGCTTGAAAGGGACCTGGCAGTTGGATGTTGCTCTTGGATGCCTAATGTTTCCCCTTGTCAATCAGCTCTCACAGTTCAACCTCAGTCTGCTCCCTCTTTTGCCTTCCACCCCGGTCACGGTATCAAGTGTTGAGCAATCAATTATGGCACGCGATCCAGTGGCTATGGCAATGTATGCAGTAGTAGTTTCAGTCTGTGCTCCCATGTGGGAGGAGATACTCTTCAGGGGTTTCTTACTGCCTTCCTTAACCAAGTACATGCCCGTGTGGTCTGCGGTATTGGTGAGCTCGGTTGTATTTGCTTTAGCACATTGGAATGTACAGAGGATTCTACCGCTTATTTTCCTTGGGGTGGTGATGGGCGTTGTATTTGCACGGTCAAGGAATCTATTACCATCGATGCTCTTGCACAGCCTTTGGAATGGCTTTGTATTTTTAGATTTAATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

350

Amino Acids

39.34

Weight (kDa)

9.56

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 256 - 341 7.9e-23 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60750
fragaria_vesca FvH4_5g03580
malus_domestica MD06G1095700.v1.1 MD14G1115700.v1.1
prunus_persica Prupe.5G110300_v2.0.a1 Prupe.5G110300_v2.0.a1
pyrus_communis pycom06g09200
rosa_chinensis RchiOBHm_Chr7g0196131
rosa_laevigata RLG00000004061
rosa_multiflora Rmu_sc0003017.1_g000007 Rmu_sc0003061.1_g000001
rosa_roxburghii Rroxscaffold_3G00259750
rosa_rugosa Rorug07G0030800
rosa_samantha Rh7AG156800 Rh7BG158500 Rh7CG162300 Rh7DG157600
rosa_wichuraiana Rw7G013390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
Acc65I GGTACC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 232
AccII CGCG 1 cut(s) 750
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 5 cut(s) 37, 57, 60, 872, 932
AclWI GGATC 2 cut(s) 128, 746
AcsI RAATTY 1 cut(s) 593
AcuI CTGAAG 3 cut(s) 180, 540, 805
AcvI CACGTG 1 cut(s) 448
AfaI GTAC 3 cut(s) 234, 854, 918
AfiI CCNNNNNNNGG 3 cut(s) 69, 715, 949
AgsI TTSAA 3 cut(s) 224, 604, 676
AjnI CCWGG 2 cut(s) 501, 611
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AluBI AGCT 7 cut(s) 9, 68, 92, 443, 600, 664, 885
AluI AGCT 7 cut(s) 9, 68, 92, 443, 600, 664, 885
Alw21I GWGCWC 3 cut(s) 11, 799, 887
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 2 cut(s) 128, 746
Ama87I CYCGRG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 580
ApeKI GCWGC 4 cut(s) 311, 401, 440, 552
ApoI RAATTY 1 cut(s) 593
Asp718I GGTACC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 609
AsuC2I CCSGG 2 cut(s) 87, 710
AsuHPI GGTGA 3 cut(s) 517, 892, 964
AsuII TTCGAA 1 cut(s) 126
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 609
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 11, 887
BbrPI CACGTG 1 cut(s) 448
Bbv12I GWGCWC 3 cut(s) 11, 799, 887
BbvI GCAGC 4 cut(s) 298, 388, 452, 539
BccI CCATC 3 cut(s) 421, 949, 1000
BceAI ACGGC 1 cut(s) 340
BcgI CGANNNNNNTGC 2 cut(s) 985, 1019
BciT130I CCWGG 2 cut(s) 503, 613
BcnI CCSGG 2 cut(s) 87, 710
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 3 cut(s) 69, 162, 327
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 5 cut(s) 60, 312, 402, 441, 553
BlsI GCNGC 5 cut(s) 61, 313, 403, 442, 554
Bme1390I CCNGG 4 cut(s) 87, 503, 613, 710
Bme18I GGWCC 1 cut(s) 609
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 609
BmiI GGNNCC 4 cut(s) 75, 234, 432, 610
BmrFI CCNGG 4 cut(s) 87, 503, 613, 710
BmsI GCATC 3 cut(s) 307, 626, 987
BplI GAGNNNNNCTC 4 cut(s) 176, 208, 285, 317
Bpu14I TTCGAA 1 cut(s) 126
BpuMI CCSGG 2 cut(s) 87, 710
Bsa29I ATCGAT 1 cut(s) 995
BsaAI YACGTR 1 cut(s) 448
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 4 cut(s) 237, 356, 708, 943
BsaWI WCCGGW 2 cut(s) 211, 580
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 715, 949
Bse1I ACTGG 1 cut(s) 755
Bse3DI GCAATG 1 cut(s) 774
BseAI TCCGGA 1 cut(s) 580
BseBI CCWGG 2 cut(s) 503, 613
BseCI ATCGAT 1 cut(s) 995
BseDI CCNNGG 4 cut(s) 237, 356, 708, 943
BseGI GGATG 3 cut(s) 432, 628, 641
BseLI CCNNNNNNNGG 3 cut(s) 69, 715, 949
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 1 cut(s) 694
BseNI ACTGG 1 cut(s) 755
BseRI GAGGAG 1 cut(s) 824
BseXI GCAGC 4 cut(s) 298, 388, 452, 539
Bsh1236I CGCG 1 cut(s) 750
BshNI GGYRCC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 995
BsiHKAI GWGCWC 3 cut(s) 11, 799, 887
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 4 cut(s) 87, 212, 581, 710
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 3 cut(s) 69, 715, 949
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 622
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 3 cut(s) 11, 799, 887
Bsp13I TCCGGA 1 cut(s) 580
Bsp1407I TGTACA 1 cut(s) 916
Bsp143I GATC 2 cut(s) 120, 751
BspACI CCGC 5 cut(s) 37, 57, 60, 872, 932
BspCNI CTCAG 1 cut(s) 693
BspDI ATCGAT 1 cut(s) 995
BspEI TCCGGA 1 cut(s) 580
BspFNI CGCG 1 cut(s) 750
BspLI GGNNCC 4 cut(s) 75, 234, 432, 610
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 2 cut(s) 128, 746
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 774
BsrGI TGTACA 1 cut(s) 916
BsrI ACTGG 1 cut(s) 755
BssECI CCNNGG 4 cut(s) 237, 356, 708, 943
BssMI GATC 2 cut(s) 120, 751
BssT1I CCWWGG 1 cut(s) 943
Bst2UI CCWGG 2 cut(s) 503, 613
Bst4CI ACNGT 4 cut(s) 144, 672, 718, 975
Bst6I CTCTTC 3 cut(s) 199, 579, 824
BstAPI GCANNNNNTGC 2 cut(s) 385, 773
BstAUI TGTACA 1 cut(s) 916
BstBAI YACGTR 1 cut(s) 448
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 748
BstDEI CTNAG 2 cut(s) 270, 680
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 3 cut(s) 432, 628, 641
BstFNI CGCG 1 cut(s) 750
BstKTI GATC 2 cut(s) 123, 754
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 2 cut(s) 120, 751
BstMWI GCNNNNNNNGC 6 cut(s) 15, 65, 317, 385, 449, 773
BstNI CCWGG 2 cut(s) 503, 613
BstNSI RCATGY 1 cut(s) 859
BstSCI CCNGG 4 cut(s) 85, 501, 611, 708
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 1 cut(s) 750
BstV1I GCAGC 4 cut(s) 298, 388, 452, 539
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
Bsu15I ATCGAT 1 cut(s) 995
BsuTUI ATCGAT 1 cut(s) 995
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 3 cut(s) 432, 628, 641
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 327, 762
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 748
Cfr13I GGNCC 1 cut(s) 609
ClaI ATCGAT 1 cut(s) 995
Csp6I GTAC 3 cut(s) 233, 853, 917
CviAII CATG 4 cut(s) 171, 385, 802, 856
CviQI GTAC 3 cut(s) 233, 853, 917
DdeI CTNAG 2 cut(s) 270, 680
DpnI GATC 2 cut(s) 122, 753
DpnII GATC 2 cut(s) 120, 751
DraI TTTAAA 1 cut(s) 592
Eam1104I CTCTTC 3 cut(s) 199, 579, 824
EarI CTCTTC 3 cut(s) 199, 579, 824
EciI GGCGGA 1 cut(s) 46
Ecl136II GAGCTC 2 cut(s) 9, 885
Eco130I CCWWGG 1 cut(s) 943
Eco24I GRGCYC 2 cut(s) 11, 887
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 609
Eco53kI GAGCTC 2 cut(s) 9, 885
Eco57I CTGAAG 3 cut(s) 180, 540, 805
Eco72I CACGTG 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 2 cut(s) 9, 885
EcoO109I RGGNCCY 1 cut(s) 609
EcoRII CCWGG 2 cut(s) 501, 611
EcoT14I CCWWGG 1 cut(s) 943
EcoT38I GRGCYC 2 cut(s) 11, 887
ErhI CCWWGG 1 cut(s) 943
FaeI CATG 4 cut(s) 174, 388, 805, 859
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 622
FatI CATG 4 cut(s) 170, 384, 801, 855
Fnu4HI GCNGC 5 cut(s) 60, 312, 402, 441, 553
FokI GGATG 3 cut(s) 439, 635, 648
FriOI GRGCYC 2 cut(s) 11, 887
Fsp4HI GCNGC 5 cut(s) 60, 312, 402, 441, 553
FspBI CTAG 3 cut(s) 69, 162, 327
GluI GCNGC 5 cut(s) 60, 312, 402, 441, 553
HapII CCGG 4 cut(s) 87, 212, 581, 710
Hin1II CATG 4 cut(s) 174, 388, 805, 859
HinfI GANTC 6 cut(s) 128, 266, 340, 467, 925, 982
HpaII CCGG 4 cut(s) 87, 212, 581, 710
HphI GGTGA 3 cut(s) 517, 892, 964
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 4 cut(s) 78, 199, 256, 305
Hpy188III TCNNGA 3 cut(s) 138, 327, 581
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 3 cut(s) 515, 711, 849
HpyCH4III ACNGT 4 cut(s) 144, 672, 718, 975
HpyCH4IV ACGT 3 cut(s) 97, 447, 562
HpyCH4V TGCA 7 cut(s) 314, 320, 379, 440, 776, 971, 1006
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 65, 317, 385, 449, 773
HpyF3I CTNAG 2 cut(s) 270, 680
HpySE526I ACGT 3 cut(s) 97, 447, 562
Hsp92II CATG 4 cut(s) 174, 388, 805, 859
Kpn2I TCCGGA 1 cut(s) 580
KpnI GGTACC 1 cut(s) 236
Kzo9I GATC 2 cut(s) 120, 751
LmnI GCTCC 5 cut(s) 14, 89, 306, 693, 802
Lsp1109I GCAGC 4 cut(s) 298, 388, 452, 539
LweI GCATC 3 cut(s) 307, 626, 987
MaeI CTAG 3 cut(s) 69, 162, 327
MaeII ACGT 3 cut(s) 97, 447, 562
MaeIII GTNAC 3 cut(s) 505, 514, 712
MalI GATC 2 cut(s) 122, 753
MboI GATC 2 cut(s) 120, 751
MboII GAAGA 4 cut(s) 115, 186, 566, 811
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 3 cut(s) 11, 799, 887
MluCI AATT 6 cut(s) 102, 333, 534, 543, 593, 738
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 5 cut(s) 101, 279, 326, 511, 600
MroI TCCGGA 1 cut(s) 580
MseI TTAA 5 cut(s) 279, 473, 591, 845, 1040
MslI CAYNNNNRTG 2 cut(s) 860, 912
MspI CCGG 4 cut(s) 87, 212, 581, 710
MspR9I CCNGG 4 cut(s) 87, 503, 613, 710
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 2 cut(s) 503, 613
MvnI CGCG 1 cut(s) 750
MwoI GCNNNNNNNGC 6 cut(s) 15, 65, 317, 385, 449, 773
NciI CCSGG 2 cut(s) 87, 710
NdeII GATC 2 cut(s) 120, 751
NlaIII CATG 4 cut(s) 174, 388, 805, 859
NlaIV GGNNCC 4 cut(s) 75, 234, 432, 610
NmuCI GTSAC 2 cut(s) 505, 712
NspI RCATGY 1 cut(s) 859
NspV TTCGAA 1 cut(s) 126
PfeI GAWTC 5 cut(s) 128, 266, 467, 925, 982
PkrI GCNGC 5 cut(s) 61, 313, 403, 442, 554
PleI GAGTC 1 cut(s) 348
PmaCI CACGTG 1 cut(s) 448
PmlI CACGTG 1 cut(s) 448
PpsI GAGTC 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 448
PpuMI RGGWCCY 1 cut(s) 609
Psp124BI GAGCTC 2 cut(s) 11, 887
Psp5II RGGWCCY 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 501, 611
PspCI CACGTG 1 cut(s) 448
PspGI CCWGG 2 cut(s) 501, 611
PspN4I GGNNCC 4 cut(s) 75, 234, 432, 610
PspPI GGNCC 1 cut(s) 609
PspPPI RGGWCCY 1 cut(s) 609
PsrI GAACNNNNNNTAC 2 cut(s) 216, 248
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 3 cut(s) 234, 854, 918
RsaNI GTAC 3 cut(s) 233, 853, 917
RseI CAYNNNNRTG 2 cut(s) 860, 912
SacI GAGCTC 2 cut(s) 11, 887
SaqAI TTAA 5 cut(s) 279, 473, 591, 845, 1040
SatI GCNGC 5 cut(s) 60, 312, 402, 441, 553
Sau3AI GATC 2 cut(s) 120, 751
Sau96I GGNCC 1 cut(s) 609
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 4 cut(s) 87, 503, 613, 710
SduI GDGCHC 3 cut(s) 11, 799, 887
SfaNI GCATC 3 cut(s) 307, 626, 987
SfcI CTRYAG 1 cut(s) 312
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 1 cut(s) 609
SmiMI CAYNNNNRTG 2 cut(s) 860, 912
Sse9I AATT 6 cut(s) 102, 333, 534, 543, 593, 738
SsiI CCGC 5 cut(s) 37, 57, 60, 872, 932
SspMI CTAG 3 cut(s) 69, 162, 327
SstI GAGCTC 2 cut(s) 11, 887
StyD4I CCNGG 4 cut(s) 85, 501, 611, 708
StyI CCWWGG 1 cut(s) 943
TaaI ACNGT 4 cut(s) 144, 672, 718, 975
TaiI ACGT 3 cut(s) 100, 450, 565
TaqI TCGA 3 cut(s) 126, 261, 995
TasI AATT 6 cut(s) 102, 333, 534, 543, 593, 738
TatI WGTACW 2 cut(s) 852, 916
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 5 cut(s) 128, 266, 467, 925, 982
Tru1I TTAA 5 cut(s) 279, 473, 591, 845, 1040
Tru9I TTAA 5 cut(s) 279, 473, 591, 845, 1040
TscAI CASTG 2 cut(s) 327, 762
TseFI GTSAC 2 cut(s) 505, 712
TseI GCWGC 4 cut(s) 311, 401, 440, 552
Tsp45I GTSAC 2 cut(s) 505, 712
TspDTI ATGAA 1 cut(s) 403
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 2 cut(s) 327, 762
VpaK11BI GGWCC 1 cut(s) 609
XapI RAATTY 1 cut(s) 593
XbaI TCTAGA 1 cut(s) 326
XceI RCATGY 1 cut(s) 859
XspI CTAG 3 cut(s) 69, 162, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.