Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013515

Physical Location & Seq

Genomic Coordinates Forward (+)

15669497 .. 15670953

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAAGCCGAAACCGAGCAGAAAATCGAGAAGACGGTGCGGAGAATCCTGGAGGAATCGGACATGGACGAGATGACGGAGTTCAAGATTCGGAAGCAGGCCTCCGAAGAGCTGGAGCTCGACCTCTCCAAGCCCCCCTACAGGGCTTTCGTCAAGCAGGTCGTCCAGTCCTTCCTCGAGGAGCAGAATCAGAAGGAACAAGCAGCAGCGCAGAAGGATGAAAACCCAGAAGCCGAAGGTGCCCAGGAACGGGAGTACGATGATAACGGCGATCTCGTGATTTGCAGGCTCTCGGCGAAGAGGAAGGTGACGCTTCAGGAATTCAGAGGGAAGAATTTGGTGTCGATTAGGGAGTTTTATTTCAAAGATGGGAAAGAGCTTCCTACTGCCAAAGGAATAAGCTTGACAGAGGAGCAATGGTCAGTCTTCAAGAAGAATGTACCTGCTATAGAGAAAGCCATTAGTAAGATGGAGTCAAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

162

Amino Acids

18.73

Weight (kDa)

5.05

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	4 - 59	5.8e-15	DEK C terminal domain
PC4	PF02229	95 - 146	2.6e-22	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10920 AT4G10920
fragaria_vesca	FvH4_5g04940
malus_domestica	MD06G1110000.v1.1 MD14G1131000.v1.1
prunus_persica	Prupe.5G122900_v2.0.a1
pyrus_communis	pycom06g10350
rosa_chinensis	RchiOBHm_Chr7g0194131
rosa_laevigata	RLG00000004215
rosa_multiflora	Rmu_sc0003468.1_g000001 Rmu_sc0009433.1_g000006
rosa_roxburghii	Rroxscaffold_3G00261530
rosa_rugosa	Rorug07G0014000
rosa_samantha	Rh7AG141100 Rh7BG141800 Rh7CG145200 Rh7DG142600
rosa_wichuraiana	Rw7G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	176
Acc36I	ACCTGC	2 cut(s)	148, 451
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	320, 334
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	257, 441
AfiI	CCNNNNNNNGG	4 cut(s)	141, 142, 249, 250
AgsI	TTSAA	3 cut(s)	85, 364, 430
AjnI	CCWGG	2 cut(s)	48, 243
AluBI	AGCT	4 cut(s)	112, 118, 379, 402
AluI	AGCT	4 cut(s)	112, 118, 379, 402
Alw21I	GWGCWC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	203, 206
ApoI	RAATTY	2 cut(s)	320, 334
AspLEI	GCGC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	120
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	2 cut(s)	38, 418
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	215, 218
BccI	CCATC	2 cut(s)	362, 463
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	2 cut(s)	50, 245
BfmI	CTRYAG	2 cut(s)	139, 447
BfuAI	ACCTGC	2 cut(s)	148, 451
BisI	GCNGC	2 cut(s)	204, 207
BlsI	GCNGC	2 cut(s)	205, 208
Bme1390I	CCNGG	2 cut(s)	50, 245
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	50, 245
BpiI	GAAGAC	2 cut(s)	38, 418
BpmI	CTGGAG	2 cut(s)	71, 134
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 142, 249, 250
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	422
BseBI	CCWGG	2 cut(s)	50, 245
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	4 cut(s)	141, 142, 249, 250
BseMI	GCAATG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	2 cut(s)	194, 425
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	215, 218
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	176
BslI	CCNNNNNNNGG	4 cut(s)	141, 142, 249, 250
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	120, 244
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	241
BspMI	ACCTGC	2 cut(s)	148, 451
BspQI	GCTCTTC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	2 cut(s)	50, 245
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	102, 293
BstC8I	GCNNGC	2 cut(s)	99, 287
BstF5I	GGATG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	2 cut(s)	50, 245
BstSCI	CCNGG	2 cut(s)	48, 243
BstSFI	CTRYAG	2 cut(s)	139, 447
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	215, 218
BstV2I	GAAGAC	2 cut(s)	38, 418
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	223
BveI	ACCTGC	2 cut(s)	148, 451
Cac8I	GCNNGC	2 cut(s)	99, 287
CfoI	GCGC	1 cut(s)	211
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	256, 440
CviAII	CATG	1 cut(s)	64
CviQI	GTAC	2 cut(s)	256, 440
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	102, 293
EarI	CTCTTC	2 cut(s)	102, 293
Ecl136II	GAGCTC	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	48, 243
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	1 cut(s)	67
FaiI	YATR	2 cut(s)	65, 449
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	204, 207
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	204, 207
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	2 cut(s)	204, 207
GsuI	CTGGAG	2 cut(s)	71, 134
HaeIII	GGCC	1 cut(s)	101
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	6 cut(s)	45, 56, 88, 187, 473, 480
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	6 cut(s)	61, 93, 106, 192, 326, 485
Hpy188III	TCNNGA	6 cut(s)	28, 85, 277, 317, 430, 477
HpyAV	CCTTC	5 cut(s)	181, 187, 208, 230, 298
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	271
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	3 cut(s)	115, 181, 412
Lsp1109I	GCAGC	2 cut(s)	215, 218
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	6 cut(s)	43, 119, 310, 343, 418, 445
MhlI	GDGCHC	2 cut(s)	120, 244
MluCI	AATT	2 cut(s)	320, 334
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	8 cut(s)	46, 112, 134, 172, 185, 294, 320, 403
MspR9I	CCNGG	2 cut(s)	50, 245
MvaI	CCWGG	2 cut(s)	50, 245
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	5 cut(s)	45, 56, 88, 187, 480
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	205, 208
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	48, 243
PspGI	CCWGG	2 cut(s)	48, 243
PspN4I	GGNNCC	1 cut(s)	241
PspXI	VCTCGAGB	1 cut(s)	176
RsaI	GTAC	2 cut(s)	257, 441
RsaNI	GTAC	2 cut(s)	256, 440
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	102
SatI	GCNGC	2 cut(s)	204, 207
Sau3AI	GATC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	2 cut(s)	50, 245
SduI	GDGCHC	2 cut(s)	120, 244
SetI	ASST	9 cut(s)	114, 120, 126, 162, 241, 309, 381, 404, 445
SfcI	CTRYAG	2 cut(s)	139, 447
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	320, 334
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	40
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	48, 243
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	4 cut(s)	27, 120, 177, 344
TasI	AATT	2 cut(s)	320, 334
TfiI	GAWTC	5 cut(s)	45, 56, 88, 187, 480
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	203, 206
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	92
XapI	RAATTY	2 cut(s)	320, 334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XhoI	CTCGAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.