Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014479

Physical Location & Seq

Genomic Coordinates Reverse (-)

16563261 .. 16564551

Gene Structure 1291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATTGGTACTTCTTCAGTCACAAGGACAAGAAATACCCAACCGGAACTCGAACCAATCGGGCAACCACTGCTGGGTTTTGGAAGGCCACTGGTCGGGACAAGATCGATCTATAGCGGCTTCAAAAGAATTGGATTGAGGAAGACACTTGTGTTTTATAAGGGTCGAGCTCCTCATGGACAAAAGTCAGATTGGATCATGCATGAATATAGGCTTGATGAAAGCAACACTCATGAAACCACCGTTTCTAGCTCAATGGGGGAGTCGATGACCGAAGACGGGTGGGTGGTCTGCCGGGTATTCAAGAAGAAGAACTATCAGAAAGCTTTAGAGAGCCCTAAAGCCTCCTTTTCCATGGACTCATCAAACAACCAAATGAATGGTTCAAGAAACGATGGTGTTCTTGATCAAATACTGATGTACATGGGAAGGACTACTTGCAAGCTGGAAAATCATGATCAATCCTTAACCATGAATAACATCTCAGAAAGATTTATGCATCTGCCAAGGCTTGAGAGCCCAACTCTTCCAAACCTTCCCGCTTTCGATCAGGAACGTAGCTTCAAAGCTTGCTATTCGGCCATTGATGACATGTTCATAGAAACTGAGCCTTCTTCAACAAACCAACCAAGCAATGGTTGTGACAATAATGACCTAGTCGATGATCATGACTACCCCAAAACAAGGCTAAATGACTGGGCTACCCTTGATAGGCTTGTGGCATCCCAACTAGGTCAACTCAATGGCCAAGATCCAGAGACACCAAAACACTTGTCTTGCTTTGGCGATCCAAACATGGCCTTTTGTTCTTCTCCTCATCCTAATGATCAAGACAATGACGTACAACTATCATATCCATACCTACGTACAAGTAGATCATCCGATCATCAATCCGAAGTATACAACAACGAGAATGATCTGTGGAACTTCACCAAATCGTCGTCATCACCGTCATCATCGGACCCGCTTTGCCACTTGTCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

329

Amino Acids

37.04

Weight (kDa)

5.47

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	35 - 72	8.9e-08	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32770
fragaria_vesca	FvH4_5g10690
malus_domestica	MD06G1121400.v1.1 MD14G1137900.v1.1
prunus_persica	Prupe.5G131900_v2.0.a1
pyrus_communis	pycom06g11260 pycom14g11310
rosa_chinensis	RchiOBHm_Chr7g0187451
rosa_laevigata	RLG00000004780
rosa_multiflora	Rmu_sc0001230.1_g000011
rosa_roxburghii	Rroxscaffold_3G00267410
rosa_rugosa	Rorug06G0481700
rosa_samantha	Rh7AG086200 Rh7BG087700 Rh7CG087100 Rh7DG088700
rosa_wichuraiana	Rw7G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	900
AciI	CCGC	3 cut(s)	117, 540, 965
AclWI	GGATC	3 cut(s)	203, 746, 782
AcoI	YGGCCR	2 cut(s)	579, 745
AfaI	GTAC	4 cut(s)	10, 422, 843, 868
AfiI	CCNNNNNNNGG	7 cut(s)	74, 95, 279, 635, 684, 711, 979
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	5 cut(s)	124, 304, 387, 565, 618
AluBI	AGCT	6 cut(s)	170, 252, 326, 445, 561, 569
AluI	AGCT	6 cut(s)	170, 252, 326, 445, 561, 569
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	3 cut(s)	203, 746, 782
AoxI	GGCC	4 cut(s)	86, 579, 745, 798
ArsI	GACNNNNNNTTYG	2 cut(s)	758, 790
AspS9I	GGNCC	1 cut(s)	961
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	922, 939
AvaII	GGWCC	1 cut(s)	961
BalI	TGGCCA	1 cut(s)	747
BanII	GRGCYC	3 cut(s)	172, 338, 521
BbsI	GAAGAC	2 cut(s)	149, 282
Bbv12I	GWGCWC	1 cut(s)	172
BccI	CCATC	1 cut(s)	389
BclI	TGATCA	4 cut(s)	406, 457, 664, 826
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	3 cut(s)	249, 656, 731
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	961
BmgT120I	GGNCC	1 cut(s)	961
BmiI	GGNNCC	1 cut(s)	963
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	1 cut(s)	706
BmsI	GCATC	2 cut(s)	508, 731
BmuI	ACTGGG	1 cut(s)	706
BoxI	GACNNNNGTC	1 cut(s)	184
BpiI	GAAGAC	2 cut(s)	149, 282
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	866
BsaJI	CCNNGG	2 cut(s)	354, 506
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	7 cut(s)	74, 95, 279, 635, 684, 711, 979
Bse1I	ACTGG	2 cut(s)	96, 701
Bse3DI	GCAATG	1 cut(s)	640
BseCI	ATCGAT	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	354, 506
BseGI	GGATG	3 cut(s)	722, 817, 878
BseLI	CCNNNNNNNGG	7 cut(s)	74, 95, 279, 635, 684, 711, 979
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	498, 597
BseNI	ACTGG	2 cut(s)	96, 701
BseRI	GAGGAG	2 cut(s)	162, 804
BseYI	CCCAGC	1 cut(s)	73
BshFI	GGCC	4 cut(s)	88, 581, 747, 800
BshVI	ATCGAT	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	44, 295
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	7 cut(s)	74, 95, 279, 635, 684, 711, 979
BsmAI	GTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	88, 581, 747, 800
Bsp1286I	GDGCHC	3 cut(s)	172, 338, 521
Bsp1407I	TGTACA	1 cut(s)	420
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	3 cut(s)	117, 540, 965
BspANI	GGCC	4 cut(s)	88, 581, 747, 800
BspCNI	CTCAG	2 cut(s)	497, 598
BspDI	ATCGAT	1 cut(s)	107
BspHI	TCATGA	3 cut(s)	232, 454, 667
BspLI	GGNNCC	1 cut(s)	963
BspPI	GGATC	3 cut(s)	203, 746, 782
BsrDI	GCAATG	1 cut(s)	640
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	2 cut(s)	96, 701
BssECI	CCNNGG	2 cut(s)	354, 506
BssNAI	GTATAC	1 cut(s)	901
BssT1I	CCWWGG	2 cut(s)	354, 506
Bst1107I	GTATAC	1 cut(s)	901
Bst4CI	ACNGT	2 cut(s)	244, 951
Bst6I	CTCTTC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstAUI	TGTACA	1 cut(s)	420
BstBAI	YACGTR	1 cut(s)	866
BstC8I	GCNNGC	2 cut(s)	443, 571
BstDEI	CTNAG	2 cut(s)	484, 606
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	722, 817, 878
BstMAI	GTCTC	1 cut(s)	752
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	595
BstPAI	GACNNNNGTC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	112
BstSNI	TACGTA	1 cut(s)	866
BstV2I	GAAGAC	2 cut(s)	149, 282
BstX2I	RGATCY	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	751
BstZ17I	GTATAC	1 cut(s)	901
Bsu15I	ATCGAT	1 cut(s)	107
BsuRI	GGCC	4 cut(s)	88, 581, 747, 800
BsuTUI	ATCGAT	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	722, 817, 878
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 89
Cac8I	GCNNGC	2 cut(s)	443, 571
CciI	TCATGA	3 cut(s)	232, 454, 667
Cfr13I	GGNCC	1 cut(s)	961
ClaI	ATCGAT	1 cut(s)	107
Csp6I	GTAC	4 cut(s)	9, 421, 842, 867
CviQI	GTAC	4 cut(s)	9, 421, 842, 867
DdeI	CTNAG	2 cut(s)	484, 606
EaeI	YGGCCR	2 cut(s)	579, 745
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	170
Eco105I	TACGTA	1 cut(s)	866
Eco130I	CCWWGG	2 cut(s)	354, 506
Eco24I	GRGCYC	3 cut(s)	172, 338, 521
Eco47I	GGWCC	1 cut(s)	961
Eco53kI	GAGCTC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	170
EcoT14I	CCWWGG	2 cut(s)	354, 506
EcoT22I	ATGCAT	2 cut(s)	204, 501
EcoT38I	GRGCYC	3 cut(s)	172, 338, 521
ErhI	CCWWGG	2 cut(s)	354, 506
FalI	AAGNNNNNCTT	2 cut(s)	421, 453
FaqI	GGGAC	1 cut(s)	112
FauI	CCCGC	2 cut(s)	547, 972
FbaI	TGATCA	4 cut(s)	406, 457, 664, 826
FblI	GTMKAC	1 cut(s)	900
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	3 cut(s)	709, 804, 865
FriOI	GRGCYC	3 cut(s)	172, 338, 521
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	3 cut(s)	249, 656, 731
GluI	GCNGC	1 cut(s)	118
GsaI	CCCAGC	1 cut(s)	77
HaeIII	GGCC	4 cut(s)	88, 581, 747, 800
HapII	CCGG	2 cut(s)	44, 295
HincII	GTYRAC	1 cut(s)	737
HindII	GTYRAC	1 cut(s)	737
HindIII	AAGCTT	2 cut(s)	324, 567
HinfI	GANTC	2 cut(s)	263, 359
HpaII	CCGG	2 cut(s)	44, 295
HphI	GGTGA	2 cut(s)	922, 939
Hpy166II	GTNNAC	2 cut(s)	737, 901
Hpy188I	TCNGA	6 cut(s)	190, 321, 487, 883, 895, 961
Hpy8I	GTNNAC	2 cut(s)	737, 901
Hpy99I	CGWCG	1 cut(s)	943
HpyAV	CCTTC	4 cut(s)	78, 423, 545, 621
HpyCH4III	ACNGT	2 cut(s)	244, 951
HpyCH4IV	ACGT	3 cut(s)	556, 840, 865
HpyCH4V	TGCA	3 cut(s)	202, 441, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	484, 606
HpySE526I	ACGT	3 cut(s)	556, 840, 865
Ksp22I	TGATCA	4 cut(s)	406, 457, 664, 826
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	8 cut(s)	57, 59, 77, 308, 431, 536, 682, 768
LweI	GCATC	2 cut(s)	508, 731
MaeI	CTAG	3 cut(s)	249, 656, 731
MaeII	ACGT	3 cut(s)	556, 840, 865
MaeIII	GTNAC	2 cut(s)	19, 641
MboII	GAAGA	8 cut(s)	6, 154, 287, 319, 322, 518, 606, 801
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	3 cut(s)	172, 338, 521
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	747
MlyI	GAGTC	2 cut(s)	272, 353
MnlI	CCTC	4 cut(s)	132, 183, 355, 825
Mox20I	TGGCCA	1 cut(s)	747
Mph1103I	ATGCAT	2 cut(s)	204, 501
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	1 cut(s)	467
MslI	CAYNNNNRTG	1 cut(s)	822
Msp20I	TGGCCA	1 cut(s)	747
MspI	CCGG	2 cut(s)	44, 295
MspR9I	CCNGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	354
NlaIV	GGNNCC	1 cut(s)	963
NmuCI	GTSAC	2 cut(s)	19, 641
NsiI	ATGCAT	2 cut(s)	204, 501
NspI	RCATGY	1 cut(s)	595
PagI	TCATGA	3 cut(s)	232, 454, 667
PciI	ACATGT	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	947
PflFI	GACNNNGTC	1 cut(s)	656
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	2 cut(s)	271, 353
PpsI	GAGTC	2 cut(s)	271, 353
Ppu21I	YACGTR	1 cut(s)	866
PscI	ACATGT	1 cut(s)	591
PshAI	GACNNNNGTC	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	963
PspPI	GGNCC	1 cut(s)	961
PsuI	RGATCY	1 cut(s)	751
PsyI	GACNNNGTC	1 cut(s)	656
RsaI	GTAC	4 cut(s)	10, 422, 843, 868
RsaNI	GTAC	4 cut(s)	9, 421, 842, 867
RseI	CAYNNNNRTG	1 cut(s)	822
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	961
SchI	GAGTC	2 cut(s)	272, 353
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	3 cut(s)	172, 338, 521
SfaNI	GCATC	2 cut(s)	508, 731
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	961
SmiMI	CAYNNNNRTG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SnaBI	TACGTA	1 cut(s)	866
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	3 cut(s)	117, 540, 965
SspMI	CTAG	3 cut(s)	249, 656, 731
SstI	GAGCTC	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	2 cut(s)	354, 506
TaaI	ACNGT	2 cut(s)	244, 951
TaiI	ACGT	3 cut(s)	559, 843, 868
TaqI	TCGA	6 cut(s)	51, 107, 166, 266, 546, 660
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	1 cut(s)	129
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TscAI	CASTG	2 cut(s)	75, 96
TseFI	GTSAC	2 cut(s)	19, 641
Tsp45I	GTSAC	2 cut(s)	19, 641
TspDTI	ATGAA	6 cut(s)	219, 234, 249, 392, 488, 586
TspRI	CASTG	2 cut(s)	75, 96
Tth111I	GACNNNGTC	1 cut(s)	656
Van91I	CCANNNNNTGG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	961
XceI	RCATGY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	900
XspI	CTAG	3 cut(s)	249, 656, 731
Zsp2I	ATGCAT	2 cut(s)	204, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.