pycom06g15760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013665
Physical Location & Seq
Reverse (-)
20261978 .. 20263692
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 780 bp
ATGCCGGGCCCTGGTCCGCACCTCATGTACGCCATGGGTTCGGGCCTGGCTCTGACCACCCTCAGCGGCGGCAGGTTCAGCCCCCACCACACCCTCTTCTACACGGTCAACGCCTTCTTCGGCCCCGACATCGGCTCCTTCTCCGAGTGGCTCGACTCCGTCTTCGGCTTCGGGTTCGGCTCCGAGCTCGCCGACTTGGTCCACGATCCCATCTTCTATTTCCTCCTCCTGGGTCTTCCTCTCTGTTTTCTCTACTCCTGGGTTTCTGGAGTTTTGCTTCGAAGGCGGGTTCTTGATTCGTTTTCTGGGGTGCCCCTTACTAAGAAGCAATGCTTCTTGCTGGTGTCAGCTGGTTCTTTTTCACACTTCTTCCTCGATCACTTGTTCGAGGAGAATGGGCATTCATCAGAGTATACATGGATTTTGAGCACTGGTTGGTGGGAGGGTCGAGCACCGGTTAATCCAGATGCTGTTGTTGTAGTTGGCATTTTATGCATCATCTTAATTGGCGGATTTGTATACATCAACAGAGTTAGGCCTCACAGGTCTATTACCAAACAATCGATACAATCAGCAATTCTAATTGCTATCGTAGCACTCCTGTACAGCTTATGGTGTGCAAGCCAAATATTCTGGGTAAATCCACGCCGGCCAGCAGTTGGCGAAGAGGCTGATTATGGGGTTCTCGTGTTTCTATCGAAATATTTCTTTCTCCCTCATCTTCTGTGCATTTTGTCCATGCACCCAAGAGATCTTGAAGCAGAGCAAATCCCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.93

Weight (kDa)

6.18

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05110 FvH4_5g05110
malus_domestica MD06G1177600.v1.1
prunus_persica Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1 Prupe.5G176300_v2.0.a1
pyrus_communis pycom06g15760
rosa_chinensis RchiOBHm_Chr7g0193891
rosa_laevigata RLG00000004236
rosa_multiflora Rmu_sc0002389.1_g000014
rosa_roxburghii Rroxscaffold_3G00261730
rosa_rugosa Rorug07G0012500 Rorug07G0012500
rosa_samantha Rh7AG139400 Rh7BG139900 Rh7CG143600 Rh7DG140800
rosa_wichuraiana Rw7G011890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 310
AccB7I CCANNNNNTGG 1 cut(s) 659
AccI GTMKAC 2 cut(s) 413, 519
AciI CCGC 5 cut(s) 17, 66, 69, 286, 510
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 650
AfaI GTAC 2 cut(s) 29, 605
AfiI CCNNNNNNNGG 4 cut(s) 11, 131, 229, 659
AgeI ACCGGT 1 cut(s) 454
AgsI TTSAA 1 cut(s) 758
AjnI CCWGG 4 cut(s) 10, 45, 228, 257
AluBI AGCT 3 cut(s) 187, 350, 609
AluI AGCT 3 cut(s) 187, 350, 609
Alw21I GWGCWC 3 cut(s) 189, 431, 454
AlwI GGATC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 470
AoxI GGCC 5 cut(s) 7, 43, 121, 536, 650
ApaI GGGCCC 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsiGI ACCGGT 1 cut(s) 454
Asp700I GAANNNNTTC 1 cut(s) 704
AspS9I GGNCC 6 cut(s) 7, 8, 14, 43, 122, 199
AsuC2I CCSGG 1 cut(s) 6
AsuII TTCGAA 1 cut(s) 280
AvaII GGWCC 2 cut(s) 14, 199
BaeGI GKGCMC 2 cut(s) 11, 315
BanI GGYRCC 1 cut(s) 310
BanII GRGCYC 2 cut(s) 11, 189
BauI CACGAG 1 cut(s) 686
BbsI GAAGAC 2 cut(s) 154, 227
Bbv12I GWGCWC 3 cut(s) 189, 431, 454
BbvCI CCTCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 4 cut(s) 12, 47, 230, 259
BcnI CCSGG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 63
BglII AGATCT 1 cut(s) 751
BisI GCNGC 2 cut(s) 67, 70
BlsI GCNGC 2 cut(s) 68, 71
Bme1390I CCNGG 5 cut(s) 6, 12, 47, 230, 259
Bme18I GGWCC 2 cut(s) 14, 199
BmgT120I GGNCC 6 cut(s) 7, 8, 14, 43, 122, 199
BmiI GGNNCC 5 cut(s) 9, 124, 136, 181, 312
BmrFI CCNGG 5 cut(s) 6, 12, 47, 230, 259
BmsI GCATC 2 cut(s) 457, 504
BpiI GAAGAC 2 cut(s) 154, 227
BpmI CTGGAG 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 280
BpuMI CCSGG 1 cut(s) 6
Bsa29I ATCGAT 1 cut(s) 563
BsaJI CCNNGG 4 cut(s) 10, 33, 229, 258
BsaWI WCCGGW 1 cut(s) 454
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 131, 229, 659
Bse118I RCCGGY 2 cut(s) 454, 648
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 335
BseBI CCWGG 4 cut(s) 12, 47, 230, 259
BseCI ATCGAT 1 cut(s) 563
BseDI CCNNGG 4 cut(s) 10, 33, 229, 258
BseLI CCNNNNNNNGG 4 cut(s) 11, 131, 229, 659
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 2 cut(s) 215, 404
BseSI GKGCMC 2 cut(s) 11, 315
BshFI GGCC 5 cut(s) 9, 45, 123, 538, 652
BshNI GGYRCC 1 cut(s) 310
BshTI ACCGGT 1 cut(s) 454
BshVI ATCGAT 1 cut(s) 563
BsiHKAI GWGCWC 3 cut(s) 189, 431, 454
BsiSI CCGG 3 cut(s) 5, 455, 649
BslI CCNNNNNNNGG 4 cut(s) 11, 131, 229, 659
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 5 cut(s) 9, 45, 123, 538, 652
Bsp119I TTCGAA 1 cut(s) 280
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 5 cut(s) 11, 189, 315, 431, 454
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 3 cut(s) 205, 376, 751
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 5 cut(s) 17, 66, 69, 286, 510
BspANI GGCC 5 cut(s) 9, 45, 123, 538, 652
BspCNI CTCAG 1 cut(s) 75
BspDI ATCGAT 1 cut(s) 563
BspLI GGNNCC 5 cut(s) 9, 124, 136, 181, 312
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 335
BsrFI RCCGGY 2 cut(s) 454, 648
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 2 cut(s) 454, 648
BssECI CCNNGG 4 cut(s) 10, 33, 229, 258
BssMI GATC 3 cut(s) 205, 376, 751
BssNAI GTATAC 2 cut(s) 414, 520
BssSI CACGAG 1 cut(s) 686
BssT1I CCWWGG 1 cut(s) 33
Bst1107I GTATAC 2 cut(s) 414, 520
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 4 cut(s) 12, 47, 230, 259
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 101, 660
BstAPI GCANNNNNTGC 1 cut(s) 492
BstAUI TGTACA 1 cut(s) 603
BstBI TTCGAA 1 cut(s) 280
BstC8I GCNNGC 4 cut(s) 189, 622, 650, 654
BstDEI CTNAG 2 cut(s) 62, 321
BstDSI CCRYGG 1 cut(s) 33
BstKTI GATC 3 cut(s) 208, 379, 754
BstMBI GATC 3 cut(s) 205, 376, 751
BstMWI GCNNNNNNNGC 4 cut(s) 78, 283, 492, 593
BstNI CCWGG 4 cut(s) 12, 47, 230, 259
BstSCI CCNGG 5 cut(s) 4, 10, 45, 228, 257
BstSLI GKGCMC 2 cut(s) 11, 315
BstV2I GAAGAC 2 cut(s) 154, 227
BstX2I RGATCY 1 cut(s) 751
BstYI RGATCY 1 cut(s) 751
BstZ17I GTATAC 2 cut(s) 414, 520
Bsu15I ATCGAT 1 cut(s) 563
BsuRI GGCC 5 cut(s) 9, 45, 123, 538, 652
BsuTUI ATCGAT 1 cut(s) 563
BtgI CCRYGG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 429
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 4 cut(s) 189, 622, 650, 654
CaiI CAGNNNCTG 1 cut(s) 470
Cfr10I RCCGGY 2 cut(s) 454, 648
Cfr13I GGNCC 6 cut(s) 7, 8, 14, 43, 122, 199
ClaI ATCGAT 1 cut(s) 563
Csp6I GTAC 2 cut(s) 28, 604
CspAI ACCGGT 1 cut(s) 454
CviAII CATG 4 cut(s) 25, 34, 417, 739
CviQI GTAC 2 cut(s) 28, 604
DdeI CTNAG 2 cut(s) 62, 321
DpnI GATC 3 cut(s) 207, 378, 753
DpnII GATC 3 cut(s) 205, 376, 751
EaeI YGGCCR 1 cut(s) 650
Eam1104I CTCTTC 2 cut(s) 101, 660
EarI CTCTTC 2 cut(s) 101, 660
EciI GGCGGA 1 cut(s) 525
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 538
Eco24I GRGCYC 2 cut(s) 11, 189
Eco47I GGWCC 2 cut(s) 14, 199
Eco53kI GAGCTC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 4 cut(s) 10, 45, 228, 257
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 497
EcoT38I GRGCYC 2 cut(s) 11, 189
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 4 cut(s) 28, 37, 420, 742
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FatI CATG 4 cut(s) 24, 33, 416, 738
FauI CCCGC 1 cut(s) 279
FblI GTMKAC 2 cut(s) 413, 519
Fnu4HI GCNGC 2 cut(s) 67, 70
FriOI GRGCYC 2 cut(s) 11, 189
Fsp4HI GCNGC 2 cut(s) 67, 70
GluI GCNGC 2 cut(s) 67, 70
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 5 cut(s) 9, 45, 123, 538, 652
HapII CCGG 3 cut(s) 5, 455, 649
Hin1II CATG 4 cut(s) 28, 37, 420, 742
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 155, 296
HpaII CCGG 3 cut(s) 5, 455, 649
Hpy166II GTNNAC 4 cut(s) 109, 202, 414, 520
Hpy188I TCNGA 4 cut(s) 54, 145, 184, 409
Hpy188III TCNNGA 4 cut(s) 267, 293, 464, 755
Hpy8I GTNNAC 4 cut(s) 109, 202, 414, 520
HpyAV CCTTC 3 cut(s) 124, 148, 276
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 4 cut(s) 495, 620, 729, 742
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 283, 492, 593
HpyF3I CTNAG 2 cut(s) 62, 321
Hsp92II CATG 4 cut(s) 28, 37, 420, 742
KroI GCCGGC 1 cut(s) 648
KroNI GCCGGC 1 cut(s) 650
Kzo9I GATC 3 cut(s) 205, 376, 751
LmnI GCTCC 2 cut(s) 140, 185
LweI GCATC 2 cut(s) 457, 504
MalI GATC 3 cut(s) 207, 378, 753
MboI GATC 3 cut(s) 205, 376, 751
MboII GAAGA 8 cut(s) 88, 109, 154, 205, 227, 361, 677, 713
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 5 cut(s) 11, 189, 315, 431, 454
MluCI AATT 3 cut(s) 504, 576, 582
MlyI GAGTC 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 497
MroNI GCCGGC 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 704
MseI TTAA 2 cut(s) 459, 503
MspA1I CMGCKG 2 cut(s) 66, 350
MspI CCGG 3 cut(s) 5, 455, 649
MspR9I CCNGG 5 cut(s) 6, 12, 47, 230, 259
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 4 cut(s) 12, 47, 230, 259
MwoI GCNNNNNNNGC 4 cut(s) 78, 283, 492, 593
NaeI GCCGGC 1 cut(s) 650
NciI CCSGG 1 cut(s) 6
NcoI CCATGG 1 cut(s) 33
NdeII GATC 3 cut(s) 205, 376, 751
NgoMIV GCCGGC 1 cut(s) 648
NlaIII CATG 4 cut(s) 28, 37, 420, 742
NlaIV GGNNCC 5 cut(s) 9, 124, 136, 181, 312
NsiI ATGCAT 1 cut(s) 497
NspV TTCGAA 1 cut(s) 280
PceI AGGCCT 1 cut(s) 538
PctI GAATGC 1 cut(s) 400
PdiI GCCGGC 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 704
PfeI GAWTC 1 cut(s) 296
PflFI GACNNNGTC 2 cut(s) 158, 197
PflMI CCANNNNNTGG 1 cut(s) 659
PinAI ACCGGT 1 cut(s) 454
PkrI GCNGC 2 cut(s) 68, 71
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 4 cut(s) 10, 45, 228, 257
PspGI CCWGG 4 cut(s) 10, 45, 228, 257
PspN4I GGNNCC 5 cut(s) 9, 124, 136, 181, 312
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 6 cut(s) 7, 8, 14, 43, 122, 199
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 1 cut(s) 751
PsyI GACNNNGTC 2 cut(s) 158, 197
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 2 cut(s) 29, 605
RsaNI GTAC 2 cut(s) 28, 604
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 2 cut(s) 459, 503
SatI GCNGC 2 cut(s) 67, 70
Sau3AI GATC 3 cut(s) 205, 376, 751
Sau96I GGNCC 6 cut(s) 7, 8, 14, 43, 122, 199
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 5 cut(s) 6, 12, 47, 230, 259
SduI GDGCHC 5 cut(s) 11, 189, 315, 431, 454
SetI ASST 6 cut(s) 24, 77, 189, 352, 548, 611
SfaNI GCATC 2 cut(s) 457, 504
SfuI TTCGAA 1 cut(s) 280
SinI GGWCC 2 cut(s) 14, 199
Sse9I AATT 3 cut(s) 504, 576, 582
SseBI AGGCCT 1 cut(s) 538
SsiI CCGC 5 cut(s) 17, 66, 69, 286, 510
SspI AATATT 2 cut(s) 630, 704
SstI GAGCTC 1 cut(s) 189
StuI AGGCCT 1 cut(s) 538
StyD4I CCNGG 5 cut(s) 4, 10, 45, 228, 257
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 7 cut(s) 153, 280, 375, 387, 448, 563, 698
TasI AATT 3 cut(s) 504, 576, 582
TatI WGTACW 1 cut(s) 603
TauI GCSGC 2 cut(s) 69, 72
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 459, 503
Tru9I TTAA 2 cut(s) 459, 503
TscAI CASTG 1 cut(s) 436
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 1 cut(s) 436
Tth111I GACNNNGTC 2 cut(s) 158, 197
Van91I CCANNNNNTGG 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 14, 199
XmiI GTMKAC 2 cut(s) 413, 519
XmnI GAANNNNTTC 1 cut(s) 704
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.