Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007797

Physical Location & Seq

Genomic Coordinates Reverse (-)

22593075 .. 22596097

Gene Structure 3023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19080.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGATGGGTCTCCATTCAGGCGTTGATACATCTACTTTGGCCATGGATGGTGTAGTTGTTGTTGACCTTGAGTGTAATCGCATCACAACGACGGAAGATATACCTCCAATCCCAGAGCCAGAATCGGGCAATTTGCGTCGGGAGATATCAAAACTATTGTATCCAAATGTTGTGGGGATAGATCAGATCAAGGAAGGTTTATATAGTTCATCTGAGCAATATTCTAAGGCTGGCAACAAACCTTGGGGAGAGGATCACGACCTTCACCTTAGATTAGTGTTCTTAAAATTCTTTGCATCGCTTTTAAGTGGCTACCGCAACTTCATAGAAATTTCTGCTACTCATGTCTTCAACACTCGAGCATTCTTGACAATGCGCTCTCGGTCAACTGGCCAACCACCAGAATCCATGTTTACACAGTTTCTGGATTCACATGGTTTCATGGATTATATAGAGAGAGGTTTGGGTTCTGAAGAAAACACTAATAATCTACTTGACAAGTTACAAGATGCACTTAGAAGGGGCCAAAATCCTGTTTCAATTCTTCCTTCAAATTCAGTAGAGCCTGAGATTATAACAATTGCAGATACGGATGTGGGAAATTCAGGAGCAGGTGCCAAATACACATATGATCGGTTTCCCTCAAACATTAGGACAGGAGCAAGAAGACAAGAGGAAGCATCGATCCTGGCTGTAGCAAGTGGATTATCCTCTAGCTCACAATCTGTTTCTAGTGGTAAAGACTCTAAATCAGAAACCCTAACTCCGCTGGAGAGGGCTGCGGAAAGGGAGTGCATGGTTTTGGACATAAAAGTTAAGCTGCAGGGTCTGTGGCTGCGTCTTCTGAAATTGGGACCTACTGATGATCCTCTTTCTTCATTTGAATATGGCACAATCCTTGCTTTAATTGAATCTGATGCTGAGGGAATTGGTGGCAGTGGGTTTTTGAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0002682 GO:0002683 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009825 GO:0009888 GO:0009987 GO:0010235 GO:0010374 GO:0010440 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031347 GO:0031348 GO:0031410 GO:0031461 GO:0031982 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0051301 GO:0061640 GO:0065007 GO:0071944 GO:0080008 GO:0080134 GO:0090558 GO:0097708 GO:1902410 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN WD40 dDENN uDENN

Protein Analysis

319

Amino Acids

34.83

Weight (kDa)

4.92

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49040 AT1G49040 AT1G49040 AT1G49040
fragaria_vesca	FvH4_5g12450 FvH4_5g12450
malus_domestica	MD14G1224200.v1.1
prunus_persica	Prupe.5G219600_v2.0.a1 Prupe.5G219600_v2.0.a1 Prupe.5G219600_v2.0.a1 Prupe.5G219600_v2.0.a1 Prupe.5G219600_v2.0.a1
pyrus_communis	pycom06g19080 pycom14g18580
rosa_chinensis	RchiOBHm_Chr7g0185021
rosa_laevigata	RLG00000004938
rosa_multiflora	Rmu_ssc0000289.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269260
rosa_rugosa	Rorug06G0466200
rosa_samantha	Rh7AG076700 Rh7BG070700 Rh7CG072200 Rh7DG071200
rosa_wichuraiana	Rw7G005890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	575
AarI	CACCTGC	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	3 cut(s)	316, 767, 782
AclWI	GGATC	3 cut(s)	261, 679, 860
AcoI	YGGCCR	2 cut(s)	39, 391
AcsI	RAATTY	4 cut(s)	287, 330, 553, 601
AcuI	CTGAAG	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	6 cut(s)	352, 540, 552, 884, 911, 949
AjnI	CCWGG	1 cut(s)	687
AluBI	AGCT	2 cut(s)	717, 820
AluI	AGCT	2 cut(s)	717, 820
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	3 cut(s)	261, 679, 860
AlwNI	CAGNNNCTG	2 cut(s)	424, 829
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	3 cut(s)	39, 391, 523
ApeKI	GCWGC	3 cut(s)	779, 820, 835
ApoI	RAATTY	4 cut(s)	287, 330, 553, 601
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	523, 854
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	854
BaeI	ACNNNNGTAYC	4 cut(s)	143, 176, 579, 612
BalI	TGGCCA	2 cut(s)	41, 393
BanI	GGYRCC	1 cut(s)	614
BbsI	GAAGAC	3 cut(s)	340, 673, 833
BbvCI	CCTCAGC	1 cut(s)	921
BbvI	GCAGC	3 cut(s)	766, 807, 822
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	689
BciVI	GTATCC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	714, 732
BfmI	CTRYAG	2 cut(s)	693, 821
BfuAI	ACCTGC	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	3 cut(s)	780, 821, 836
BlsI	GCNGC	3 cut(s)	781, 822, 837
Bme1390I	CCNGG	1 cut(s)	689
Bme18I	GGWCC	1 cut(s)	854
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	523, 854
BmiI	GGNNCC	3 cut(s)	524, 616, 855
BmrFI	CCNGG	1 cut(s)	689
BmsI	GCATC	5 cut(s)	90, 305, 499, 689, 907
BpiI	GAAGAC	3 cut(s)	340, 673, 833
BpmI	CTGGAG	1 cut(s)	791
Bpu10I	CCTNAGC	1 cut(s)	921
BpuEI	CTTGAG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	683
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	42, 242
BsaXI	ACNNNNNCTCC	2 cut(s)	748, 778
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	689
BseCI	ATCGAT	1 cut(s)	683
BseDI	CCNNGG	2 cut(s)	42, 242
BseGI	GGATG	2 cut(s)	52, 598
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	3 cut(s)	204, 558, 912
BseNI	ACTGG	1 cut(s)	394
BseXI	GCAGC	3 cut(s)	766, 807, 822
BshFI	GGCC	3 cut(s)	41, 393, 525
BshNI	GGYRCC	1 cut(s)	614
BshVI	ATCGAT	1 cut(s)	683
BsiHKCI	CYCGRG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	867
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	867
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	3 cut(s)	41, 393, 525
Bso31I	GGTCTC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	357
Bsp143I	GATC	6 cut(s)	181, 186, 253, 631, 684, 865
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	3 cut(s)	316, 767, 782
BspANI	GGCC	3 cut(s)	41, 393, 525
BspCNI	CTCAG	3 cut(s)	205, 559, 913
BspDI	ATCGAT	1 cut(s)	683
BspLI	GGNNCC	3 cut(s)	524, 616, 855
BspMAI	CTGCAG	1 cut(s)	825
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	3 cut(s)	261, 679, 860
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	42, 242
BssMI	GATC	6 cut(s)	181, 186, 253, 631, 684, 865
BssT1I	CCWWGG	2 cut(s)	42, 242
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	6 cut(s)	213, 225, 269, 515, 567, 921
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	52, 598
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	6 cut(s)	184, 189, 256, 634, 687, 868
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	6 cut(s)	181, 186, 253, 631, 684, 865
BstNI	CCWGG	1 cut(s)	689
BstSCI	CCNGG	1 cut(s)	687
BstSFI	CTRYAG	2 cut(s)	693, 821
BstV1I	GCAGC	3 cut(s)	766, 807, 822
BstV2I	GAAGAC	3 cut(s)	340, 673, 833
Bsu15I	ATCGAT	1 cut(s)	683
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	41, 393, 525
BsuTUI	ATCGAT	1 cut(s)	683
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	52, 598
BtsI	GCAGTG	1 cut(s)	943
BtsIMutI	CAGTG	1 cut(s)	943
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	2 cut(s)	424, 829
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	2 cut(s)	523, 854
ClaI	ATCGAT	1 cut(s)	683
CseI	GACGC	2 cut(s)	125, 827
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviAII	CATG	6 cut(s)	43, 344, 409, 434, 442, 796
DdeI	CTNAG	6 cut(s)	213, 225, 269, 515, 567, 921
DpnI	GATC	6 cut(s)	183, 188, 255, 633, 686, 867
DpnII	GATC	6 cut(s)	181, 186, 253, 631, 684, 865
EaeI	YGGCCR	2 cut(s)	39, 391
Eco130I	CCWWGG	2 cut(s)	42, 242
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	854
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	854
EcoRII	CCWGG	1 cut(s)	687
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	42, 242
ErhI	CCWWGG	2 cut(s)	42, 242
FaeI	CATG	6 cut(s)	46, 347, 412, 437, 445, 799
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	1 cut(s)	867
FatI	CATG	6 cut(s)	42, 343, 408, 433, 441, 795
FauNDI	CATATG	1 cut(s)	628
Fnu4HI	GCNGC	3 cut(s)	780, 821, 836
FokI	GGATG	2 cut(s)	59, 605
Fsp4HI	GCNGC	3 cut(s)	780, 821, 836
FspBI	CTAG	2 cut(s)	714, 732
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	3 cut(s)	780, 821, 836
GsuI	CTGGAG	1 cut(s)	791
HaeIII	GGCC	3 cut(s)	41, 393, 525
HgaI	GACGC	2 cut(s)	125, 827
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	6 cut(s)	46, 347, 412, 437, 445, 799
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	2 cut(s)	64, 387
HindII	GTYRAC	2 cut(s)	64, 387
HinfI	GANTC	5 cut(s)	122, 404, 428, 743, 911
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	64, 387, 414
Hpy188I	TCNGA	6 cut(s)	186, 214, 472, 754, 846, 916
Hpy188III	TCNNGA	5 cut(s)	140, 257, 367, 425, 606
Hpy8I	GTNNAC	3 cut(s)	64, 387, 414
Hpy99I	CGWCG	2 cut(s)	94, 141
HpyAV	CCTTC	4 cut(s)	188, 272, 513, 558
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4V	TGCA	5 cut(s)	296, 512, 584, 795, 823
HpyF3I	CTNAG	6 cut(s)	213, 225, 269, 515, 567, 921
Hsp92II	CATG	6 cut(s)	46, 347, 412, 437, 445, 799
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	6 cut(s)	181, 186, 253, 631, 684, 865
LmnI	GCTCC	2 cut(s)	608, 659
Lsp1109I	GCAGC	3 cut(s)	766, 807, 822
LweI	GCATC	5 cut(s)	90, 305, 499, 689, 907
MaeI	CTAG	2 cut(s)	714, 732
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	6 cut(s)	183, 188, 255, 633, 686, 867
MboI	GATC	6 cut(s)	181, 186, 253, 631, 684, 865
MboII	GAAGA	7 cut(s)	107, 340, 485, 536, 678, 833, 867
MfeI	CAATTG	1 cut(s)	579
MlsI	TGGCCA	2 cut(s)	41, 393
MluNI	TGGCCA	2 cut(s)	41, 393
MlyI	GAGTC	1 cut(s)	737
MnlI	CCTC	9 cut(s)	114, 244, 452, 652, 667, 721, 768, 879, 916
Mox20I	TGGCCA	2 cut(s)	41, 393
MscI	TGGCCA	2 cut(s)	41, 393
MseI	TTAA	4 cut(s)	284, 305, 816, 905
Msp20I	TGGCCA	2 cut(s)	41, 393
MspA1I	CMGCKG	1 cut(s)	769
MspR9I	CCNGG	1 cut(s)	689
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	689
NcoI	CCATGG	1 cut(s)	42
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	6 cut(s)	181, 186, 253, 631, 684, 865
NlaIII	CATG	6 cut(s)	46, 347, 412, 437, 445, 799
NlaIV	GGNNCC	3 cut(s)	524, 616, 855
PaeR7I	CTCGAG	1 cut(s)	357
PaqCI	CACCTGC	1 cut(s)	602
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	4 cut(s)	122, 404, 428, 911
PkrI	GCNGC	3 cut(s)	781, 822, 837
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
PpuMI	RGGWCCY	1 cut(s)	854
PsiI	TTATAA	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	3 cut(s)	524, 616, 855
PspPI	GGNCC	2 cut(s)	523, 854
PspPPI	RGGWCCY	1 cut(s)	854
PspXI	VCTCGAGB	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	825
PstNI	CAGNNNCTG	2 cut(s)	424, 829
SaqAI	TTAA	4 cut(s)	284, 305, 816, 905
SatI	GCNGC	3 cut(s)	780, 821, 836
Sau3AI	GATC	6 cut(s)	181, 186, 253, 631, 684, 865
Sau96I	GGNCC	2 cut(s)	523, 854
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	1 cut(s)	689
SfaNI	GCATC	5 cut(s)	90, 305, 499, 689, 907
SfcI	CTRYAG	2 cut(s)	693, 821
Sfr274I	CTCGAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	854
SlaI	CTCGAG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	68, 357
SmoI	CTYRAG	2 cut(s)	68, 357
SsiI	CCGC	3 cut(s)	316, 767, 782
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	2 cut(s)	714, 732
StyD4I	CCNGG	1 cut(s)	687
StyI	CCWWGG	2 cut(s)	42, 242
TaaI	ACNGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	358, 683
TaqII	GACCGA	1 cut(s)	372
TfiI	GAWTC	4 cut(s)	122, 404, 428, 911
Tru1I	TTAA	4 cut(s)	284, 305, 816, 905
Tru9I	TTAA	4 cut(s)	284, 305, 816, 905
TscAI	CASTG	1 cut(s)	943
TseI	GCWGC	3 cut(s)	779, 820, 835
TspDTI	ATGAA	4 cut(s)	198, 313, 430, 867
TspGWI	ACGGA	2 cut(s)	107, 605
TspRI	CASTG	1 cut(s)	943
VpaK11BI	GGWCC	1 cut(s)	854
XapI	RAATTY	4 cut(s)	287, 330, 553, 601
XhoI	CTCGAG	1 cut(s)	357
XspI	CTAG	2 cut(s)	714, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.